FC876447

Overview
NameFC876447
Unique NameFC876447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6024 contig Ccv1_Contig6024:11..627. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP4_ASPCL (ATP-dependent RNA helicase dbp4 OS=Aspergillus clavatus GN=dbp4 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 42/116 (36.21%), Postives = 65/116 (56.03%), Query Frame = 3
Query:  279 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY----GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            +S  +F+ L L+E  +        +  T +Q+  I   L+G+DVLG A+TGSGKT AF +P+L  L    +    G+ AL+++PTRELA Q+ E  + +G        +V+GG  L
Sbjct:   46 ESFESFSDLPLSEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPVLENLYRRQWAEHDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSL 161          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: Y8611_DROME (Probable ATP-dependent RNA helicase CG8611 OS=Drosophila melanogaster GN=CG8611 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 45/94 (47.87%), Postives = 58/94 (61.70%), Query Frame = 3
Query:  303 LGLAEWAVQTCKEL-GMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED------PYGVLALVITPTRELAYQLAEQFKAL 563
            LGL   AV+  ++L  +R  T VQ   IP++L+GKDVL  +QTGSGKT A+ALP++  L +         GVLALVI PTREL  Q  E  + L
Sbjct:  332 LGLHPHAVKNLEDLLSIRELTSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDGVLALVIVPTRELVMQTYELIQKL 425          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RH53_ORYSJ (DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica GN=Os07g0143700 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 36/99 (36.36%), Postives = 58/99 (58.59%), Query Frame = 3
Query:  279 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAE------DPYGVLALVITPTRELAYQLAEQFK 557
            D  +  A LG++ W V+     G+ R  P+Q   +   ++GKD++G A+TG+GKT AF +PI+ R+             LA+++ PTRELA Q+ ++FK
Sbjct:   81 DDGLEVARLGISPWIVERLAARGITRLFPIQRAVLDPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHNEKNGSGRNPLAIILAPTRELARQVEKEFK 179          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: HAS1_PICST (ATP-dependent RNA helicase HAS1 OS=Pichia stipitis GN=HAS1 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 46/126 (36.51%), Postives = 69/126 (54.76%), Query Frame = 3
Query:  243 KFTNPDPNSTTTDS-TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALP---ILHRLAEDP-YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605
            ++T P+      D+    F   GL+E  ++   ++G +  T VQ   IP +L GKDVLG A+TGSGKT AF +P   +L+ L   P  G   +V++PTRELA Q+    + L +       +V+GG
Sbjct:   87 EYTKPEVVDNEDDAQNDKFEDAGLSEPTMRAISDMGFKTMTKVQAKTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIELLYSLKFKPRNGTGVIVVSPTRELALQIFGVARELMAHHTQTFGIVIGG 212          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: HAS1_ASPCL (ATP-dependent RNA helicase has1 OS=Aspergillus clavatus GN=has1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = 3
Query:  294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLA----EDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605
            F  LGL+E  ++   E+G    T +Q   IP +L G+DVLG A+TGSGKT +F +P +  L+    +   G   LV++PTRELA Q+    + L         +V+GG
Sbjct:  145 FTELGLSEKTLKAINEMGFETMTEIQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEMLSALRFKPRNGTGVLVVSPTRELALQIFGVARELCQHHSQTYGIVIGG 252          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: FAL1_EMENI (ATP-dependent RNA helicase fal1 OS=Emericella nidulans GN=fal1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 40/118 (33.90%), Postives = 67/118 (56.78%), Query Frame = 3
Query:  267 STTTDSTV--TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            +T+ + TV  TF  + L E  ++     G   P+ VQ+  I +I +G+D +  AQ+G+GKTA F++  L  +        ALV++PTRELA Q+     ALG  ++++C   +GG ++
Sbjct:   16 NTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISALQVIDTVVRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNI 133          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DRS1_PHANO (ATP-dependent RNA helicase DRS1 OS=Phaeosphaeria nodorum GN=DRS1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 42/108 (38.89%), Postives = 57/108 (52.78%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGV---LALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605
            +F  + L+    +    +G   PTP+Q   IP  ++GKDV+G A+TGSGKTAAF +PIL RL   P  V      +  PTRELA Q       L S   +   ++ GG
Sbjct:  286 SFHAMSLSRPIQKGLAAIGFTEPTPIQAKAIPIAMQGKDVVGGAETGSGKTAAFLIPILERLLYRPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDITFALLAGG 393          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX55_DANRE (ATP-dependent RNA helicase DDX55 OS=Danio rerio GN=ddx55 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 41/80 (51.25%), Postives = 49/80 (61.25%), Query Frame = 3
Query:  324 VQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAE-----DPYGVLALVITPTRELAYQLAE 548
            +QT KELG    TPVQ+ CIP  +  KDV   A TGSGKT AF +P L  L +         V AL+ITPTRELA Q++E
Sbjct:   21 LQTLKELGFTYMTPVQSACIPLFMSNKDVAAEAVTGSGKTLAFVIPALEILLKREEKLKKMQVGALIITPTRELAMQISE 100          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP4_PICGU (ATP-dependent RNA helicase DBP4 OS=Pichia guilliermondii GN=DBP4 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 47/142 (33.10%), Postives = 71/142 (50.00%), Query Frame = 3
Query:  213 SKNAKTAQ----LEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY----GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            S+N K  Q    L+K  +    +T   S   F  L ++E   +   E      T +Q   IP  L+ +DV+G A+TGSGKT AF +P++ +L  +      G+ AL+++PTRELA Q  E    +G        +V GG D+
Sbjct:   17 SRNQKVLQTIADLQKRIDEYDPATDEQSISQFKHLPISEGTYKGLLENNFVSLTDIQKKAIPVALKSEDVMGTARTGSGKTLAFLVPVIEKLIRENITEYDGLAALIVSPTRELAVQTFEVLTKIGKYNSFSAGLVTGGKDV 158          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP2_CANGA (ATP-dependent RNA helicase DBP2 OS=Candida glabrata GN=DBP2 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 38/111 (34.23%), Postives = 59/111 (53.15%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY-----GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGM 608
            TF   G  ++ ++  K  G  +PT +Q    P  L G+D++G+A TGSGKT ++ LP +  +   P      G + LV+ PTRELA Q+ ++    G    +R   V GG+
Sbjct:  111 TFDEAGFPDYVLKEVKAEGFDKPTSIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGKSSRIRNTCVYGGV 221          
The following BLAST results are available for this feature:
BLAST of FC876447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP4_ASPCL4.552e-1236.21ATP-dependent RNA helicase dbp4 OS=Aspergillus cla... [more]
Y8611_DROME5.945e-1247.87Probable ATP-dependent RNA helicase CG8611 OS=Dros... [more]
RH53_ORYSJ5.945e-1236.36DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sa... [more]
HAS1_PICST5.945e-1236.51ATP-dependent RNA helicase HAS1 OS=Pichia stipitis... [more]
HAS1_ASPCL5.945e-1237.96ATP-dependent RNA helicase has1 OS=Aspergillus cla... [more]
FAL1_EMENI5.945e-1233.90ATP-dependent RNA helicase fal1 OS=Emericella nidu... [more]
DRS1_PHANO5.945e-1238.89ATP-dependent RNA helicase DRS1 OS=Phaeosphaeria n... [more]
DDX55_DANRE5.945e-1251.25ATP-dependent RNA helicase DDX55 OS=Danio rerio GN... [more]
DBP4_PICGU5.945e-1233.10ATP-dependent RNA helicase DBP4 OS=Pichia guillier... [more]
DBP2_CANGA5.945e-1234.23ATP-dependent RNA helicase DBP2 OS=Candida glabrat... [more]

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Properties
Property NameValue
Genbank descriptionC32004H06EF DevOvary1 Citrus clementina cDNA clone C32004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876447 ID=FC876447; Name=FC876447; organism=Citrus clementina; type=EST; length=617bp
GACTGATTAGCAGTACACCCGAAAATCGAATCCTTGGCCTTCTCCAGTGG
AAATTACCTATATTCATAACCCTAACTGTAAAATTGTTGATTTATACTGA
CTGAGTAAACATGGACGAACAAATCCTCCTCGACGGGAACTTCCCTCTCT
TCGCCAAACCCAAATCTAAAACCAGAAGCAAACCGGAACCGCAACCTGAA
CCTGAACCGGAATCCAAAAACGCTAAAACCGCTCAACTCGAGAAATTCAC
AAATCCCGATCCTAACTCTACCACCACCGACTCCACCGTCACTTTCGCCG
GCCTCGGCCTCGCCGAATGGGCGGTTCAGACATGCAAGGAGCTTGGCATG
CGGCGGCCGACACCGGTCCAAACCCACTGCATACCCAAAATTCTCGAGGG
CAAGGACGTGCTGGGGCTGGCGCAGACCGGTAGCGGCAAAACCGCAGCGT
TCGCACTTCCGATACTCCACCGTTTGGCAGAGGACCCGTATGGGGTATTG
GCACTGGTTATAACGCCGACGAGGGAGCTGGCGTACCAGTTGGCGGAACA
GTTTAAGGCTCTGGGTTCGGGCTTGCATTTGAGGTGTGAGGTTGTGGTTG
GAGGAATGGATTTGTTG
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