FC876447
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP4_ASPCL (ATP-dependent RNA helicase dbp4 OS=Aspergillus clavatus GN=dbp4 PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12 Identity = 42/116 (36.21%), Postives = 65/116 (56.03%), Query Frame = 3 Query: 279 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY----GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 +S +F+ L L+E + + T +Q+ I L+G+DVLG A+TGSGKT AF +P+L L + G+ AL+++PTRELA Q+ E + +G +V+GG L Sbjct: 46 ESFESFSDLPLSEPTLSGLTSSHFKTLTDIQSRAISHALKGRDVLGAAKTGSGKTLAFLVPVLENLYRRQWAEHDGLGALILSPTRELAIQIFEVLRKIGRYHTFSAGLVIGGKSL 161
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: Y8611_DROME (Probable ATP-dependent RNA helicase CG8611 OS=Drosophila melanogaster GN=CG8611 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12 Identity = 45/94 (47.87%), Postives = 58/94 (61.70%), Query Frame = 3 Query: 303 LGLAEWAVQTCKEL-GMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAED------PYGVLALVITPTRELAYQLAEQFKAL 563 LGL AV+ ++L +R T VQ IP++L+GKDVL +QTGSGKT A+ALP++ L + GVLALVI PTREL Q E + L Sbjct: 332 LGLHPHAVKNLEDLLSIRELTSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDGVLALVIVPTRELVMQTYELIQKL 425
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RH53_ORYSJ (DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica GN=Os07g0143700 PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12 Identity = 36/99 (36.36%), Postives = 58/99 (58.59%), Query Frame = 3 Query: 279 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAE------DPYGVLALVITPTRELAYQLAEQFK 557 D + A LG++ W V+ G+ R P+Q + ++GKD++G A+TG+GKT AF +PI+ R+ LA+++ PTRELA Q+ ++FK Sbjct: 81 DDGLEVARLGISPWIVERLAARGITRLFPIQRAVLDPAMQGKDMIGRARTGTGKTLAFGIPIMDRILRHNEKNGSGRNPLAIILAPTRELARQVEKEFK 179
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: HAS1_PICST (ATP-dependent RNA helicase HAS1 OS=Pichia stipitis GN=HAS1 PE=3 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12 Identity = 46/126 (36.51%), Postives = 69/126 (54.76%), Query Frame = 3 Query: 243 KFTNPDPNSTTTDS-TVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALP---ILHRLAEDP-YGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605 ++T P+ D+ F GL+E ++ ++G + T VQ IP +L GKDVLG A+TGSGKT AF +P +L+ L P G +V++PTRELA Q+ + L + +V+GG Sbjct: 87 EYTKPEVVDNEDDAQNDKFEDAGLSEPTMRAISDMGFKTMTKVQAKTIPPLLAGKDVLGAAKTGSGKTLAFLIPAIELLYSLKFKPRNGTGVIVVSPTRELALQIFGVARELMAHHTQTFGIVIGG 212
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: HAS1_ASPCL (ATP-dependent RNA helicase has1 OS=Aspergillus clavatus GN=has1 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12 Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = 3 Query: 294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLA----EDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605 F LGL+E ++ E+G T +Q IP +L G+DVLG A+TGSGKT +F +P + L+ + G LV++PTRELA Q+ + L +V+GG Sbjct: 145 FTELGLSEKTLKAINEMGFETMTEIQRRTIPPLLAGRDVLGAAKTGSGKTLSFLIPAVEMLSALRFKPRNGTGVLVVSPTRELALQIFGVARELCQHHSQTYGIVIGG 252
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: FAL1_EMENI (ATP-dependent RNA helicase fal1 OS=Emericella nidulans GN=fal1 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12 Identity = 40/118 (33.90%), Postives = 67/118 (56.78%), Query Frame = 3 Query: 267 STTTDSTV--TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 +T+ + TV TF + L E ++ G P+ VQ+ I +I +G+D + AQ+G+GKTA F++ L + ALV++PTRELA Q+ ALG ++++C +GG ++ Sbjct: 16 NTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISALQVIDTVVRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNI 133
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DRS1_PHANO (ATP-dependent RNA helicase DRS1 OS=Phaeosphaeria nodorum GN=DRS1 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12 Identity = 42/108 (38.89%), Postives = 57/108 (52.78%), Query Frame = 3 Query: 291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGV---LALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGG 605 +F + L+ + +G PTP+Q IP ++GKDV+G A+TGSGKTAAF +PIL RL P V + PTRELA Q L S + ++ GG Sbjct: 286 SFHAMSLSRPIQKGLAAIGFTEPTPIQAKAIPIAMQGKDVVGGAETGSGKTAAFLIPILERLLYRPKKVPTTRVAIFMPTRELAVQCFNVATKLASFTDITFALLAGG 393
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX55_DANRE (ATP-dependent RNA helicase DDX55 OS=Danio rerio GN=ddx55 PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12 Identity = 41/80 (51.25%), Postives = 49/80 (61.25%), Query Frame = 3 Query: 324 VQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAE-----DPYGVLALVITPTRELAYQLAE 548 +QT KELG TPVQ+ CIP + KDV A TGSGKT AF +P L L + V AL+ITPTRELA Q++E Sbjct: 21 LQTLKELGFTYMTPVQSACIPLFMSNKDVAAEAVTGSGKTLAFVIPALEILLKREEKLKKMQVGALIITPTRELAMQISE 100
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP4_PICGU (ATP-dependent RNA helicase DBP4 OS=Pichia guilliermondii GN=DBP4 PE=3 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12 Identity = 47/142 (33.10%), Postives = 71/142 (50.00%), Query Frame = 3 Query: 213 SKNAKTAQ----LEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY----GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 S+N K Q L+K + +T S F L ++E + E T +Q IP L+ +DV+G A+TGSGKT AF +P++ +L + G+ AL+++PTRELA Q E +G +V GG D+ Sbjct: 17 SRNQKVLQTIADLQKRIDEYDPATDEQSISQFKHLPISEGTYKGLLENNFVSLTDIQKKAIPVALKSEDVMGTARTGSGKTLAFLVPVIEKLIRENITEYDGLAALIVSPTRELAVQTFEVLTKIGKYNSFSAGLVTGGKDV 158
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP2_CANGA (ATP-dependent RNA helicase DBP2 OS=Candida glabrata GN=DBP2 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12 Identity = 38/111 (34.23%), Postives = 59/111 (53.15%), Query Frame = 3 Query: 291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPY-----GVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGM 608 TF G ++ ++ K G +PT +Q P L G+D++G+A TGSGKT ++ LP + + P G + LV+ PTRELA Q+ ++ G +R V GG+ Sbjct: 111 TFDEAGFPDYVLKEVKAEGFDKPTSIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGKSSRIRNTCVYGGV 221 The following BLAST results are available for this feature:
BLAST of FC876447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876447 ID=FC876447; Name=FC876447; organism=Citrus clementina; type=EST; length=617bpback to top |