FC876447

Overview
NameFC876447
Unique NameFC876447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6024 contig Ccv1_Contig6024:11..627. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DDX49_DROME (Probable ATP-dependent RNA helicase Dbp45A OS=Drosophila melanogaster GN=Dbp45A PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.612e-25
Identity = 58/106 (54.72%), Postives = 73/106 (68.87%), Query Frame = 3
Query:  294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMD 611
            F  LGL  W V+   +LG++  TP+Q  CIP IL G+D +G A+TGSGKT AFALPIL RL+E+P    ALV+TPT ELAYQ++EQF   G  + +R  VV GG D
Sbjct:    9 FQILGLRPWLVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEEPVSHFALVLTPTHELAYQISEQFLVAGQAMGVRVCVVSGGTD 114          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_KLULA (ATP-dependent RNA helicase DBP8 OS=Kluyveromyces lactis GN=DBP8 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.612e-25
Identity = 54/112 (48.21%), Postives = 78/112 (69.64%), Query Frame = 3
Query:  282 STVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            S   F  LG ++W V+    + + +PT +Q  CIP+IL+G+D +G A TGSGKT AFA P+L + +EDP G+  +V+TPTRELA Q+AEQF A GS +++R  +VVGG  ++
Sbjct:    2 SNSEFKSLGCSKWLVEALNAMKIVQPTAIQKACIPEILKGRDCIGGANTGSGKTIAFAAPMLTKWSEDPQGMFGIVLTPTRELAMQIAEQFTAFGSAMNIRVAIVVGGESIV 113          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_CANGA (ATP-dependent rRNA helicase RRP3 OS=Candida glabrata GN=RRP3 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.105e-25
Identity = 62/131 (47.33%), Postives = 82/131 (62.60%), Query Frame = 3
Query:  225 KTAQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            K A+ EK   P+   T      +FA L L    +Q C+ L   +PTP+Q   IP  L G DV+GLAQTGSGKTAAFA+PIL++L ED     A V+ PTRELA Q+ E F +LGS + +R   +VGGM+++
Sbjct:   56 KQAKDEKVEEPEEEVTFE----SFAQLNLVPELIQACQNLNFTKPTPIQARAIPPALAGSDVIGLAQTGSGKTAAFAIPILNKLWEDQQPYYACVLAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMM 182          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_MAGGR (ATP-dependent RNA helicase DBP8 OS=Magnaporthe grisea GN=DBP8 PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.105e-25
Identity = 54/113 (47.79%), Postives = 79/113 (69.91%), Query Frame = 3
Query:  276 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            TD   TF  LG+  W VQ+   L ++RPT +Q  CI +IL+G+D +G ++TGSGKT AFA+PIL + A+DP  + A+V+T TR+LA Q+ EQFKA+ S   L+  +++GG D+
Sbjct:  132 TDQNTTFESLGVEPWLVQSLANLAVKRPTGIQKGCIGEILKGRDCIGGSRTGSGKTIAFAVPILQKYAQDPSAIFAVVLTATRQLALQIYEQFKAVSSPHVLKAALIIGGSDM 244          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_ASPTN (ATP-dependent RNA helicase dbp8 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dbp8 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.749e-25
Identity = 51/108 (47.22%), Postives = 79/108 (73.15%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            +F  L +A W + +   + +R+PT +Q  CIP+IL+G+D +G ++TGSGKT AFA+PIL + AEDP+G+ A+V+TPTRELA Q+ EQFKA+ +   ++  ++ GG D+
Sbjct:   87 SFKALNVAPWLIGSLTTMAVRKPTAIQRACIPEILKGRDCIGGSRTGSGKTIAFAVPILQKWAEDPFGIFAVVLTPTRELALQIYEQFKAISAPQSMKPVLITGGTDM 194          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_DEBHA (ATP-dependent rRNA helicase RRP3 OS=Debaryomyces hansenii GN=RRP3 PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 3.590e-25
Identity = 70/163 (42.94%), Postives = 91/163 (55.83%), Query Frame = 3
Query:  162 KSKTRSKXXXXXXXXXX-SKNAKTAQLEKFTNPDPN-----STTTDSTV-----TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            KSKT SK            KNA   Q ++    + N      T  D T      +F  L L    ++  +++   +PTP+Q+  IP  LEGKD++GLAQTGSGKTAAFA+PIL  L E       LV+ PTRELAYQ+ E F ALGS + LR   +VGGMD++
Sbjct:   12 KSKTHSKKLDARALAEKIKKNALKQQAQEEPAKEENVAENFDTVVDPTAELKFKSFNELKLIPELLEAIQQMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQALWEAQAAYYGLVLAPTRELAYQIKETFDALGSSMGLRSVCIVGGMDMM 174          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RH10_ORYSJ (DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa subsp. japonica GN=Os03g0669000 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.590e-25
Identity = 56/109 (51.38%), Postives = 75/109 (68.81%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRL--AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMD 611
            TFA LG+    V  C  +G + PT +Q   IP  LEG+D++GL QTGSGKT AFALPI+  L   + P  + A V++PTRELA+Q+ +QF+ALGS + L C V+VGG+D
Sbjct:   42 TFAELGVVPELVAACDAMGWKEPTRIQAEAIPHALEGRDLIGLGQTGSGKTGAFALPIIQALLKQDKPQALFACVLSPTRELAFQIGQQFEALGSAIGLSCTVLVGGVD 150          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_USTMA (ATP-dependent RNA helicase DBP8 OS=Ustilago maydis GN=DBP8 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.998e-25
Identity = 55/111 (49.55%), Postives = 82/111 (73.87%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSG--LHLRCEVVVGGMDLL 617
            +F+ +G++   +++   L ++ PTP+Q+  IP +LEG+D++G AQTGSGKT  FALPIL++L +D  G  A+V+TPTREL  QL EQF A+G G  + LRC +V+GGMD++
Sbjct:  110 SFSSIGISPMLIRSLASLQIKVPTPIQSLTIPSVLEGRDLVGGAQTGSGKTLCFALPILNKLIKDMVGGFAVVLTPTRELGVQLHEQFVAVGEGARMGLRCALVLGGMDMM 220          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_CANAL (ATP-dependent rRNA helicase RRP3 OS=Candida albicans GN=RRP3 PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.045e-24
Identity = 63/146 (43.15%), Postives = 89/146 (60.96%), Query Frame = 3
Query:  216 KNAKTAQLEKFTNPDPNSTTTDSTV----------TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRL--AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            +NA   Q E   +   ++T++  T           TF  L L    +++ + +   +PTP+Q+  IP  LEGKD++GLAQTGSGKTAAFA+PIL  L  A+ PY   ALV+ PTREL +Q+ + F ALGS + LR   +VGGMD++
Sbjct:   89 ENANHNQTESSLSSSSSTTSSSITTIDPDAELKFKTFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWHAQQPY--FALVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMDMM 232          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_LODEL (ATP-dependent RNA helicase DBP8 OS=Lodderomyces elongisporus GN=DBP8 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.364e-24
Identity = 52/109 (47.71%), Postives = 82/109 (75.23%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            +F  LG+A+W  ++ + + +  PT +Q+ CIP+IL+G+D +G A+TGSGKT AFA  +L + ++DP+G+  L++TPTRELA Q+AEQF ALG+ ++++  VVVGG D +
Sbjct:    4 SFKELGVAKWLSESLEAMKIHSPTSIQSACIPEILKGRDCIGGAKTGSGKTIAFAALMLTQWSQDPFGIFGLILTPTRELALQIAEQFAALGALMNIKVCVVVGGEDFV 112          
The following BLAST results are available for this feature:
BLAST of FC876447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX49_DROME1.612e-2554.72Probable ATP-dependent RNA helicase Dbp45A OS=Dros... [more]
DBP8_KLULA1.612e-2548.21ATP-dependent RNA helicase DBP8 OS=Kluyveromyces l... [more]
RRP3_CANGA2.105e-2547.33ATP-dependent rRNA helicase RRP3 OS=Candida glabra... [more]
DBP8_MAGGR2.105e-2547.79ATP-dependent RNA helicase DBP8 OS=Magnaporthe gri... [more]
DBP8_ASPTN2.749e-2547.22ATP-dependent RNA helicase dbp8 OS=Aspergillus ter... [more]
RRP3_DEBHA3.590e-2542.94ATP-dependent rRNA helicase RRP3 OS=Debaryomyces h... [more]
RH10_ORYSJ3.590e-2551.38DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sa... [more]
DBP8_USTMA7.998e-2549.55ATP-dependent RNA helicase DBP8 OS=Ustilago maydis... [more]
RRP3_CANAL1.045e-2443.15ATP-dependent rRNA helicase RRP3 OS=Candida albica... [more]
DBP8_LODEL1.364e-2447.71ATP-dependent RNA helicase DBP8 OS=Lodderomyces el... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32004H06EF DevOvary1 Citrus clementina cDNA clone C32004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876447 ID=FC876447; Name=FC876447; organism=Citrus clementina; type=EST; length=617bp
GACTGATTAGCAGTACACCCGAAAATCGAATCCTTGGCCTTCTCCAGTGG
AAATTACCTATATTCATAACCCTAACTGTAAAATTGTTGATTTATACTGA
CTGAGTAAACATGGACGAACAAATCCTCCTCGACGGGAACTTCCCTCTCT
TCGCCAAACCCAAATCTAAAACCAGAAGCAAACCGGAACCGCAACCTGAA
CCTGAACCGGAATCCAAAAACGCTAAAACCGCTCAACTCGAGAAATTCAC
AAATCCCGATCCTAACTCTACCACCACCGACTCCACCGTCACTTTCGCCG
GCCTCGGCCTCGCCGAATGGGCGGTTCAGACATGCAAGGAGCTTGGCATG
CGGCGGCCGACACCGGTCCAAACCCACTGCATACCCAAAATTCTCGAGGG
CAAGGACGTGCTGGGGCTGGCGCAGACCGGTAGCGGCAAAACCGCAGCGT
TCGCACTTCCGATACTCCACCGTTTGGCAGAGGACCCGTATGGGGTATTG
GCACTGGTTATAACGCCGACGAGGGAGCTGGCGTACCAGTTGGCGGAACA
GTTTAAGGCTCTGGGTTCGGGCTTGCATTTGAGGTGTGAGGTTGTGGTTG
GAGGAATGGATTTGTTG
back to top