FC876447

Overview
NameFC876447
Unique NameFC876447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6024 contig Ccv1_Contig6024:11..627. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_ASPNC (ATP-dependent RNA helicase dbp8 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp8 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.782e-24
Identity = 50/112 (44.64%), Postives = 79/112 (70.54%), Query Frame = 3
Query:  279 DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            D+  +FA L +A W + +   + +R+PT +Q  CIP+IL G+D +G ++TGSGKT AF++P+L + AEDP+G+  LV+TPTRELA Q+ EQ KA+ +   ++  ++ GG D+
Sbjct:   89 DAQNSFASLNVAPWLIGSLTTMAVRKPTAIQKACIPEILNGRDCIGGSRTGSGKTIAFSVPMLQKWAEDPFGIFGLVLTPTRELALQIYEQIKAISAPQSMKPLLITGGTDM 200          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_EMENI (ATP-dependent RNA helicase dbp8 OS=Emericella nidulans GN=dbp8 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.039e-24
Identity = 49/108 (45.37%), Postives = 78/108 (72.22%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            +F  L +A W V +   + +R+PT +Q  CIP+IL+G+D +G ++TGSGKT AF++PIL + AEDP+G+ A+++TPTRELA Q+ EQ KA+ +   ++  ++ GG D+
Sbjct:   96 SFKALNVAPWLVGSLTTMAVRKPTAIQRACIPEILKGRDCIGGSRTGSGKTIAFSVPILQKWAEDPFGIFAVILTPTRELALQIFEQIKAISAPQSMKPVLITGGTDM 203          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_VANPO (ATP-dependent rRNA helicase RRP3 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=RRP3 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.969e-24
Identity = 53/109 (48.62%), Postives = 74/109 (67.89%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            +F+ L L    ++ CK L   +PTP+Q   IP  L+G D++GLAQTGSGKTAAFA+PIL+RL  D     A ++ PTRELA Q+ E F +LGS + +R   +VGGM+++
Sbjct:   87 SFSDLDLVPELIEACKNLNFAKPTPIQARSIPPALQGHDIIGLAQTGSGKTAAFAIPILNRLWHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSACIVGGMNMM 195          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_ASHGO (ATP-dependent rRNA helicase RRP3 OS=Ashbya gossypii GN=RRP3 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.969e-24
Identity = 60/157 (38.22%), Postives = 87/157 (55.41%), Query Frame = 3
Query:  147 LFAKPKSKTRSKXXXXXXXXXXSKNAKTAQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            L  K K K              ++ A TA   +    +  +   +   +F  L L    ++ C  L   +PTP+Q+  IP  L+GKD++GLAQTGSGKTAAFA+PIL+RL  D     A ++ PTRELA Q+ E F +LGS + +R   +VGGM+++
Sbjct:   19 LAEKIKQKALENRKQSREESQATEEANTASETEAAVIEETAEPEEGFSSFRELDLVPELIEACDNLNFTKPTPIQSKAIPPALQGKDIIGLAQTGSGKTAAFAIPILNRLWHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRTTCIVGGMNMM 175          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_NEOFI (ATP-dependent RNA helicase dbp8 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp8 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.969e-24
Identity = 49/108 (45.37%), Postives = 78/108 (72.22%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            +FA L +A W V +   + +R+PT +Q  CIP+IL+G+D +G ++TGSGKT AF++P+L + AEDP+G+  +V+TPTRELA Q+ EQ KA+ +   ++  ++ GG D+
Sbjct:   97 SFAALNVAPWLVGSLTTMAVRKPTAIQKACIPEILKGRDCIGGSRTGSGKTIAFSVPMLQKWAEDPFGIFGVVLTPTRELALQIFEQIKAISAPQSMKPVLITGGTDM 204          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_ASPFU (ATP-dependent RNA helicase dbp8 OS=Aspergillus fumigatus GN=dbp8 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.969e-24
Identity = 49/108 (45.37%), Postives = 78/108 (72.22%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            +FA L +A W V +   + +R+PT +Q  CIP+IL+G+D +G ++TGSGKT AF++P+L + AEDP+G+  +V+TPTRELA Q+ EQ KA+ +   ++  ++ GG D+
Sbjct:   97 SFAALNVAPWLVGSLTTMAVRKPTAIQKACIPEILKGRDCIGGSRTGSGKTIAFSVPMLQKWAEDPFGIFGVVLTPTRELALQIFEQIKAISAPQSMKPVLITGGTDM 204          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_PHANO (ATP-dependent RNA helicase DBP8 OS=Phaeosphaeria nodorum GN=DBP8 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.184e-24
Identity = 55/130 (42.31%), Postives = 84/130 (64.62%), Query Frame = 3
Query:  222 AKTAQLEKFTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMD 611
            A    + K + P+ N       V+FA + +A W V +   + ++RPT +Q  CIP+IL+G+D +G ++TG+GKT AF++PIL + AEDP G+  L+ITPTRELA Q+ EQ KA+ +   ++  +V GG D
Sbjct:   58 ASRVAVSKASVPEENGK---EKVSFASIDVAPWLVASLASMEIKRPTGIQKACIPEILKGRDCIGGSRTGTGKTVAFSVPILQKWAEDPSGIFGLIITPTRELAIQIYEQVKAISAPQSMKPILVTGGSD 184          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_ASPCL (ATP-dependent RNA helicase dbp8 OS=Aspergillus clavatus GN=dbp8 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.184e-24
Identity = 50/108 (46.30%), Postives = 76/108 (70.37%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            +F+ L +A W V +   L +R+PT +Q  CIP+IL GKD +G ++TGSGKT AF++P+L + AEDP G+  L++TPTRELA Q+ EQ KA+ +   ++  ++ GG D+
Sbjct:   94 SFSALNVAPWLVGSLTTLAVRKPTAIQKACIPEILNGKDCIGGSRTGSGKTIAFSVPMLQKWAEDPLGIFGLILTPTRELALQIFEQIKAISAPQSMKPVLITGGTDM 201          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_PICST (ATP-dependent rRNA helicase RRP3 OS=Pichia stipitis GN=RRP3 PE=3 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 6.771e-24
Identity = 62/141 (43.97%), Postives = 86/141 (60.99%), Query Frame = 3
Query:  225 KTAQLEKFTNPDPNSTTT-------DSTV---TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            K  QLE+ + P+ +  +        D  V   TF+ L L    ++  +++   +PTP+Q+  IP  LEGKD++GLAQTGSGKTAAFA+PIL  L E       LV+ P RELAYQ+ E F ALGS + +R   +VGGMD++
Sbjct:   40 KKQQLEEESKPESSQKSKNIVEVNPDDEVKFSTFSELKLVPELLEAIQQMKFSKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWEAQTPYFGLVLAPARELAYQIKETFDALGSTMGVRTVCLVGGMDMM 180          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_NEUCR (ATP-dependent RNA helicase dbp-8 OS=Neurospora crassa GN=dbp-8 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.155e-23
Identity = 57/137 (41.61%), Postives = 86/137 (62.77%), Query Frame = 3
Query:  225 KTAQLEKFTN----PDPNSTTT---DSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            KT + E+ T     P+P ST +   D+  TF  L +  W VQ+   + ++RPT +Q  CIP+IL+G+D +G ++TGSGKT AFA+PIL + A +P  +  +++TPTRELA Q+ EQ  AL     L+  ++ GG D+
Sbjct:  167 KTEKTEEATPALPVPEPASTVSVPIDANTTFDALNVRPWLVQSLANMAIKRPTGIQKGCIPEILKGRDCIGGSRTGSGKTVAFAVPILQQWAANPSAIFGVILTPTRELALQIMEQVIALSQPHVLKAVLITGGADM 303          
The following BLAST results are available for this feature:
BLAST of FC876447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP8_ASPNC1.782e-2444.64ATP-dependent RNA helicase dbp8 OS=Aspergillus nig... [more]
DBP8_EMENI3.039e-2445.37ATP-dependent RNA helicase dbp8 OS=Emericella nidu... [more]
RRP3_VANPO3.969e-2448.62ATP-dependent rRNA helicase RRP3 OS=Vanderwaltozym... [more]
RRP3_ASHGO3.969e-2438.22ATP-dependent rRNA helicase RRP3 OS=Ashbya gossypi... [more]
DBP8_NEOFI3.969e-2445.37ATP-dependent RNA helicase dbp8 OS=Neosartorya fis... [more]
DBP8_ASPFU3.969e-2445.37ATP-dependent RNA helicase dbp8 OS=Aspergillus fum... [more]
DBP8_PHANO5.184e-2442.31ATP-dependent RNA helicase DBP8 OS=Phaeosphaeria n... [more]
DBP8_ASPCL5.184e-2446.30ATP-dependent RNA helicase dbp8 OS=Aspergillus cla... [more]
RRP3_PICST6.771e-2443.97ATP-dependent rRNA helicase RRP3 OS=Pichia stipiti... [more]
DBP8_NEUCR1.155e-2341.61ATP-dependent RNA helicase dbp-8 OS=Neurospora cra... [more]

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Properties
Property NameValue
Genbank descriptionC32004H06EF DevOvary1 Citrus clementina cDNA clone C32004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876447 ID=FC876447; Name=FC876447; organism=Citrus clementina; type=EST; length=617bp
GACTGATTAGCAGTACACCCGAAAATCGAATCCTTGGCCTTCTCCAGTGG
AAATTACCTATATTCATAACCCTAACTGTAAAATTGTTGATTTATACTGA
CTGAGTAAACATGGACGAACAAATCCTCCTCGACGGGAACTTCCCTCTCT
TCGCCAAACCCAAATCTAAAACCAGAAGCAAACCGGAACCGCAACCTGAA
CCTGAACCGGAATCCAAAAACGCTAAAACCGCTCAACTCGAGAAATTCAC
AAATCCCGATCCTAACTCTACCACCACCGACTCCACCGTCACTTTCGCCG
GCCTCGGCCTCGCCGAATGGGCGGTTCAGACATGCAAGGAGCTTGGCATG
CGGCGGCCGACACCGGTCCAAACCCACTGCATACCCAAAATTCTCGAGGG
CAAGGACGTGCTGGGGCTGGCGCAGACCGGTAGCGGCAAAACCGCAGCGT
TCGCACTTCCGATACTCCACCGTTTGGCAGAGGACCCGTATGGGGTATTG
GCACTGGTTATAACGCCGACGAGGGAGCTGGCGTACCAGTTGGCGGAACA
GTTTAAGGCTCTGGGTTCGGGCTTGCATTTGAGGTGTGAGGTTGTGGTTG
GAGGAATGGATTTGTTG
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