FC876447

Overview
NameFC876447
Unique NameFC876447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6024 contig Ccv1_Contig6024:11..627. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_KLULA (ATP-dependent rRNA helicase RRP3 OS=Kluyveromyces lactis GN=RRP3 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.970e-23
Identity = 52/109 (47.71%), Postives = 73/109 (66.97%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            +F  L L    ++ CK L   +PTP+Q+  IP  L+G D++GLAQTGSGKTAAFA+PIL++L  D     A ++ PTRELA Q+ E F +LGS + +R   +VGGM ++
Sbjct:   68 SFTELDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMM 176          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_ASPOR (ATP-dependent RNA helicase dbp8 OS=Aspergillus oryzae GN=dbp8 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.360e-23
Identity = 48/104 (46.15%), Postives = 76/104 (73.08%), Query Frame = 3
Query:  303 LGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            L ++ W V +   + +R+PT +Q  CIP+IL+G+D +G ++TGSGKT AFA+PIL + A+DP+G+ A+V+TPTRELA Q+ EQ KA+ +   ++  ++ GG D+
Sbjct:   18 LNVSPWLVGSLTTMAVRKPTAIQKACIPEILKGRDCIGGSRTGSGKTIAFAVPILQKWAQDPFGIFAVVLTPTRELALQIYEQIKAISAPQSMKPLLITGGTDM 121          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_LODEL (ATP-dependent rRNA helicase RRP3 OS=Lodderomyces elongisporus GN=RRP3 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.845e-22
Identity = 55/120 (45.83%), Postives = 79/120 (65.83%), Query Frame = 3
Query:  264 NSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRL--AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617
            +S++  S  +F    L    +++ + L   +PTP+Q   IP  L+GKD++G+A+TGSGKTAAFA+PIL  L  A  PY   ALV+ PTRELA+Q+ E F ALGS + LR   ++GGM ++
Sbjct:   90 SSSSPPSVQSFTEFDLVPELLESIQSLKYTQPTPIQAAAIPHALQGKDIVGIAETGSGKTAAFAIPILQTLYTAAQPY--YALVLAPTRELAFQIKETFDALGSSMGLRSVCIIGGMSMM 207          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DEAD_BUCAI (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=deaD PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.365e-21
Identity = 51/100 (51.00%), Postives = 69/100 (69.00%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGS---GLHL 581
            TF+ LGL  + +Q+  E+G  +P+P+Q  CIP +LEG+DVLG+AQTGSGKTAAF+LP+LH L  +      LV+ PTRELA Q+AE F        G+H+
Sbjct:    7 TFSFLGLNPFIIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYMIGIHV 106          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP10_CANAL (ATP-dependent RNA helicase DBP10 OS=Candida albicans GN=DBP10 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.007e-21
Identity = 52/124 (41.94%), Postives = 81/124 (65.32%), Query Frame = 3
Query:  246 FTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRL-AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            F N +P +    +  +FA  GL ++ +    + G ++PTP+Q   IP I+EG+DV+G+A+TGSGKTAAF LP++ RL +  P GV A++++P+RELA Q  +Q K    G +L+  V++GG  L
Sbjct:   86 FINNNPTAKKAKAG-SFASFGLTKFILANIAKKGYKQPTPIQRKTIPLIMEGRDVVGMARTGSGKTAAFVLPLIERLKSRQPGGVRAVILSPSRELALQTYKQVKEFSHGTNLQSIVLIGGDSL 208          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: Y956_STAHJ (Probable DEAD-box ATP-dependent RNA helicase SH0956 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH0956 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.195e-20
Identity = 48/107 (44.86%), Postives = 71/107 (66.36%), Query Frame = 3
Query:  294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            F  LG+++  V+T + +G + PTP+Q   IP  LEGKD+LG AQTG+GKT AF +P++ ++     GV AL++ PTRELA Q+AEQ +    G +++   V GGM +
Sbjct:    4 FKELGISDKTVETLEAMGFKEPTPIQKDSIPYTLEGKDILGQAQTGTGKTGAFGIPLIEKVVGQS-GVQALILAPTRELAMQVAEQLREFSRGQNVQVVTVFGGMPI 109          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: Y802_STAS1 (Probable DEAD-box ATP-dependent RNA helicase SSP0802 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP0802 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.195e-20
Identity = 49/107 (45.79%), Postives = 70/107 (65.42%), Query Frame = 3
Query:  294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            F  LG+++   +T + +G    TP+Q   IP  LEGKDVLG AQTG+GKT AF +P++ ++A D  GV +L++ PTRELA Q+AE  KA   G +++   V GGM +
Sbjct:    4 FKELGISDKMAETLQSMGFNEATPIQKESIPLALEGKDVLGQAQTGTGKTGAFGIPLIEKVA-DQEGVQSLILAPTRELAMQVAESLKAFAKGQNIQVVTVFGGMPI 109          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DEAD_BUCBP (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=deaD PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.195e-20
Identity = 48/93 (51.61%), Postives = 65/93 (69.89%), Query Frame = 3
Query:  276 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQF 554
            T + +TF+  GL    +    ++G  +P+P+Q  CIP +++GKDVLG+AQTGSGKTAAFALP+LH +  D      LV+TPTRELA Q+AE F
Sbjct:    2 THTNMTFSSFGLNSCIITALNDIGYVQPSPIQAACIPYLIKGKDVLGMAQTGSGKTAAFALPLLHNIKLDVRVPQILVLTPTRELAVQVAEAF 94          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP10_YARLI (ATP-dependent RNA helicase DBP10 OS=Yarrowia lipolytica GN=DBP10 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.561e-20
Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 3
Query:  270 TTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLA--EDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            T   S+ +FAGLGL++  ++     G ++PTP+Q   IP +LEGKDV+G+A+TGSGKTAAF LP+L +L       G  A++++P+RELA Q  +  K   +G  LR  ++VGG  L
Sbjct:   96 TGKKSSGSFAGLGLSQLVLKNIARKGFKQPTPIQRKTIPLVLEGKDVVGMARTGSGKTAAFVLPMLEKLKVHSAKVGARAVILSPSRELALQTLKVVKDFSAGTDLRLAMLVGGDSL 212          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DEAD_BUCAP (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Schizaphis graminum GN=deaD PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.663e-20
Identity = 52/107 (48.60%), Postives = 73/107 (68.22%), Query Frame = 3
Query:  270 TTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGS---GLHL 581
            T T+ST +F  LGL  + +++  ++G  +P+P+Q  CIP +LEG+DVLG+AQTGSGKTAAF+LP+LH L  +      LV+ PTRELA Q+AE F        G+H+
Sbjct:    2 THTESTFSF--LGLNPFIIKSLSKMGYVKPSPIQAACIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYIMGIHV 106          
The following BLAST results are available for this feature:
BLAST of FC876447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRP3_KLULA1.970e-2347.71ATP-dependent rRNA helicase RRP3 OS=Kluyveromyces ... [more]
DBP8_ASPOR3.360e-2346.15ATP-dependent RNA helicase dbp8 OS=Aspergillus ory... [more]
RRP3_LODEL2.845e-2245.83ATP-dependent rRNA helicase RRP3 OS=Lodderomyces e... [more]
DEAD_BUCAI5.365e-2151.00Cold-shock DEAD box protein A homolog OS=Buchnera ... [more]
DBP10_CANAL7.007e-2141.94ATP-dependent RNA helicase DBP10 OS=Candida albica... [more]
Y956_STAHJ1.195e-2044.86Probable DEAD-box ATP-dependent RNA helicase SH095... [more]
Y802_STAS11.195e-2045.79Probable DEAD-box ATP-dependent RNA helicase SSP08... [more]
DEAD_BUCBP1.195e-2051.61Cold-shock DEAD box protein A homolog OS=Buchnera ... [more]
DBP10_YARLI1.561e-2044.44ATP-dependent RNA helicase DBP10 OS=Yarrowia lipol... [more]
DEAD_BUCAP2.663e-2048.60Cold-shock DEAD box protein A homolog OS=Buchnera ... [more]

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Properties
Property NameValue
Genbank descriptionC32004H06EF DevOvary1 Citrus clementina cDNA clone C32004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876447 ID=FC876447; Name=FC876447; organism=Citrus clementina; type=EST; length=617bp
GACTGATTAGCAGTACACCCGAAAATCGAATCCTTGGCCTTCTCCAGTGG
AAATTACCTATATTCATAACCCTAACTGTAAAATTGTTGATTTATACTGA
CTGAGTAAACATGGACGAACAAATCCTCCTCGACGGGAACTTCCCTCTCT
TCGCCAAACCCAAATCTAAAACCAGAAGCAAACCGGAACCGCAACCTGAA
CCTGAACCGGAATCCAAAAACGCTAAAACCGCTCAACTCGAGAAATTCAC
AAATCCCGATCCTAACTCTACCACCACCGACTCCACCGTCACTTTCGCCG
GCCTCGGCCTCGCCGAATGGGCGGTTCAGACATGCAAGGAGCTTGGCATG
CGGCGGCCGACACCGGTCCAAACCCACTGCATACCCAAAATTCTCGAGGG
CAAGGACGTGCTGGGGCTGGCGCAGACCGGTAGCGGCAAAACCGCAGCGT
TCGCACTTCCGATACTCCACCGTTTGGCAGAGGACCCGTATGGGGTATTG
GCACTGGTTATAACGCCGACGAGGGAGCTGGCGTACCAGTTGGCGGAACA
GTTTAAGGCTCTGGGTTCGGGCTTGCATTTGAGGTGTGAGGTTGTGGTTG
GAGGAATGGATTTGTTG
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