FC876447
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_KLULA (ATP-dependent rRNA helicase RRP3 OS=Kluyveromyces lactis GN=RRP3 PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.970e-23 Identity = 52/109 (47.71%), Postives = 73/109 (66.97%), Query Frame = 3 Query: 291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 +F L L ++ CK L +PTP+Q+ IP L+G D++GLAQTGSGKTAAFA+PIL++L D A ++ PTRELA Q+ E F +LGS + +R +VGGM ++ Sbjct: 68 SFTELDLVPELIEACKNLNYNKPTPIQSKAIPPALKGSDIIGLAQTGSGKTAAFAIPILNQLWHDQQPYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMSMM 176
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP8_ASPOR (ATP-dependent RNA helicase dbp8 OS=Aspergillus oryzae GN=dbp8 PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 3.360e-23 Identity = 48/104 (46.15%), Postives = 76/104 (73.08%), Query Frame = 3 Query: 303 LGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 L ++ W V + + +R+PT +Q CIP+IL+G+D +G ++TGSGKT AFA+PIL + A+DP+G+ A+V+TPTRELA Q+ EQ KA+ + ++ ++ GG D+ Sbjct: 18 LNVSPWLVGSLTTMAVRKPTAIQKACIPEILKGRDCIGGSRTGSGKTIAFAVPILQKWAQDPFGIFAVVLTPTRELALQIYEQIKAISAPQSMKPLLITGGTDM 121
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RRP3_LODEL (ATP-dependent rRNA helicase RRP3 OS=Lodderomyces elongisporus GN=RRP3 PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 2.845e-22 Identity = 55/120 (45.83%), Postives = 79/120 (65.83%), Query Frame = 3 Query: 264 NSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRL--AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDLL 617 +S++ S +F L +++ + L +PTP+Q IP L+GKD++G+A+TGSGKTAAFA+PIL L A PY ALV+ PTRELA+Q+ E F ALGS + LR ++GGM ++ Sbjct: 90 SSSSPPSVQSFTEFDLVPELLESIQSLKYTQPTPIQAAAIPHALQGKDIVGIAETGSGKTAAFAIPILQTLYTAAQPY--YALVLAPTRELAFQIKETFDALGSSMGLRSVCIIGGMSMM 207
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DEAD_BUCAI (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=deaD PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 5.365e-21 Identity = 51/100 (51.00%), Postives = 69/100 (69.00%), Query Frame = 3 Query: 291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGS---GLHL 581 TF+ LGL + +Q+ E+G +P+P+Q CIP +LEG+DVLG+AQTGSGKTAAF+LP+LH L + LV+ PTRELA Q+AE F G+H+ Sbjct: 7 TFSFLGLNPFIIQSLNEMGYVKPSPIQASCIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYMIGIHV 106
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP10_CANAL (ATP-dependent RNA helicase DBP10 OS=Candida albicans GN=DBP10 PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 7.007e-21 Identity = 52/124 (41.94%), Postives = 81/124 (65.32%), Query Frame = 3 Query: 246 FTNPDPNSTTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRL-AEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 F N +P + + +FA GL ++ + + G ++PTP+Q IP I+EG+DV+G+A+TGSGKTAAF LP++ RL + P GV A++++P+RELA Q +Q K G +L+ V++GG L Sbjct: 86 FINNNPTAKKAKAG-SFASFGLTKFILANIAKKGYKQPTPIQRKTIPLIMEGRDVVGMARTGSGKTAAFVLPLIERLKSRQPGGVRAVILSPSRELALQTYKQVKEFSHGTNLQSIVLIGGDSL 208
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: Y956_STAHJ (Probable DEAD-box ATP-dependent RNA helicase SH0956 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH0956 PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.195e-20 Identity = 48/107 (44.86%), Postives = 71/107 (66.36%), Query Frame = 3 Query: 294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 F LG+++ V+T + +G + PTP+Q IP LEGKD+LG AQTG+GKT AF +P++ ++ GV AL++ PTRELA Q+AEQ + G +++ V GGM + Sbjct: 4 FKELGISDKTVETLEAMGFKEPTPIQKDSIPYTLEGKDILGQAQTGTGKTGAFGIPLIEKVVGQS-GVQALILAPTRELAMQVAEQLREFSRGQNVQVVTVFGGMPI 109
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: Y802_STAS1 (Probable DEAD-box ATP-dependent RNA helicase SSP0802 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP0802 PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.195e-20 Identity = 49/107 (45.79%), Postives = 70/107 (65.42%), Query Frame = 3 Query: 294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 F LG+++ +T + +G TP+Q IP LEGKDVLG AQTG+GKT AF +P++ ++A D GV +L++ PTRELA Q+AE KA G +++ V GGM + Sbjct: 4 FKELGISDKMAETLQSMGFNEATPIQKESIPLALEGKDVLGQAQTGTGKTGAFGIPLIEKVA-DQEGVQSLILAPTRELAMQVAESLKAFAKGQNIQVVTVFGGMPI 109
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DEAD_BUCBP (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=deaD PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 1.195e-20 Identity = 48/93 (51.61%), Postives = 65/93 (69.89%), Query Frame = 3 Query: 276 TDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQF 554 T + +TF+ GL + ++G +P+P+Q CIP +++GKDVLG+AQTGSGKTAAFALP+LH + D LV+TPTRELA Q+AE F Sbjct: 2 THTNMTFSSFGLNSCIITALNDIGYVQPSPIQAACIPYLIKGKDVLGMAQTGSGKTAAFALPLLHNIKLDVRVPQILVLTPTRELAVQVAEAF 94
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DBP10_YARLI (ATP-dependent RNA helicase DBP10 OS=Yarrowia lipolytica GN=DBP10 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.561e-20 Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 3 Query: 270 TTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLA--EDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 T S+ +FAGLGL++ ++ G ++PTP+Q IP +LEGKDV+G+A+TGSGKTAAF LP+L +L G A++++P+RELA Q + K +G LR ++VGG L Sbjct: 96 TGKKSSGSFAGLGLSQLVLKNIARKGFKQPTPIQRKTIPLVLEGKDVVGMARTGSGKTAAFVLPMLEKLKVHSAKVGARAVILSPSRELALQTLKVVKDFSAGTDLRLAMLVGGDSL 212
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: DEAD_BUCAP (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Schizaphis graminum GN=deaD PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 2.663e-20 Identity = 52/107 (48.60%), Postives = 73/107 (68.22%), Query Frame = 3 Query: 270 TTTDSTVTFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGS---GLHL 581 T T+ST +F LGL + +++ ++G +P+P+Q CIP +LEG+DVLG+AQTGSGKTAAF+LP+LH L + LV+ PTRELA Q+AE F G+H+ Sbjct: 2 THTESTFSF--LGLNPFIIKSLSKMGYVKPSPIQAACIPLLLEGRDVLGMAQTGSGKTAAFSLPLLHNLNINLKAPQILVLAPTRELAVQVAEAFSDFSKYIMGIHV 106 The following BLAST results are available for this feature:
BLAST of FC876447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876447 ID=FC876447; Name=FC876447; organism=Citrus clementina; type=EST; length=617bpback to top |