FC876447
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: Y1688_STAEQ (Probable DEAD-box ATP-dependent RNA helicase SERP1688 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP1688 PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 7.747e-20 Identity = 47/107 (43.93%), Postives = 69/107 (64.49%), Query Frame = 3 Query: 294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 F LG+++ VQT + +G + PTP+Q IP LEG D+LG AQTG+GKT AF +P++ ++ GV +L++ PTRELA Q+AEQ + G ++ V GGM + Sbjct: 4 FKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEKVV-GQQGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPI 109
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: Y1679_STAES (Probable DEAD-box ATP-dependent RNA helicase SE_1679 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_1679 PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 7.747e-20 Identity = 47/107 (43.93%), Postives = 69/107 (64.49%), Query Frame = 3 Query: 294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 F LG+++ VQT + +G + PTP+Q IP LEG D+LG AQTG+GKT AF +P++ ++ GV +L++ PTRELA Q+AEQ + G ++ V GGM + Sbjct: 4 FKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEKVV-GQQGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPI 109
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RH28_ARATH (DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana GN=RH28 PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 7.747e-20 Identity = 54/127 (42.52%), Postives = 74/127 (58.27%), Query Frame = 3 Query: 255 PDPNSTTTDSTV----TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLA---LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 P P +T D TF L L+ ++ C+ LG ++PTP+Q CIP L G+D+ A TGSGKTAAFALP L RL P V A L++TPTRELA Q+ + L ++C ++VGG+ + Sbjct: 152 PKPFFSTVDGVSFHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSV 278
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RH28_ORYSJ (DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa subsp. japonica GN=Os12g0481100 PE=2 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 1.726e-19 Identity = 50/109 (45.87%), Postives = 70/109 (64.22%), Query Frame = 3 Query: 291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLA---LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGM 608 +F L L+ ++ C+ LG ++PTP+Q CIP L G+D+ G A TGSGKTAAF+LP+L RL P V A L++TPTRELA Q+ + L +RC ++VGG+ Sbjct: 195 SFLELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERLLFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGL 303
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: CSHA_BACHK (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus thuringiensis subsp. konkukian GN=cshA PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.944e-19 Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 3 Query: 291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 TF LGL++ +Q+ + +G TP+Q IP L+GKD++G AQTG+GKTAAF LP+L ++ V +VI PTRELA Q+ E+ +G +R + GG D+ Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDI 110
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: CSHA_BACCZ (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ZK / E33L) GN=cshA PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.944e-19 Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 3 Query: 291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 TF LGL++ +Q+ + +G TP+Q IP L+GKD++G AQTG+GKTAAF LP+L ++ V +VI PTRELA Q+ E+ +G +R + GG D+ Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDI 110
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: CSHA_BACCR (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=cshA PE=3 SV=2) HSP 1 Score: 95.1301 bits (235), Expect = 2.944e-19 Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 3 Query: 291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 TF LGL++ +Q+ + +G TP+Q IP L+GKD++G AQTG+GKTAAF LP+L ++ V +VI PTRELA Q+ E+ +G +R + GG D+ Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDI 110
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: CSHA_BACC1 (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ATCC 10987) GN=cshA PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.944e-19 Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 3 Query: 291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 TF LGL++ +Q+ + +G TP+Q IP L+GKD++G AQTG+GKTAAF LP+L ++ V +VI PTRELA Q+ E+ +G +R + GG D+ Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDI 110
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: CSHA_BACAN (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus anthracis GN=cshA PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.944e-19 Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 3 Query: 291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 TF LGL++ +Q+ + +G TP+Q IP L+GKD++G AQTG+GKTAAF LP+L ++ V +VI PTRELA Q+ E+ +G +R + GG D+ Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDI 110
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: CSHA_BACAH (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus thuringiensis (strain Al Hakam) GN=cshA PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.944e-19 Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 3 Query: 291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614 TF LGL++ +Q+ + +G TP+Q IP L+GKD++G AQTG+GKTAAF LP+L ++ V +VI PTRELA Q+ E+ +G +R + GG D+ Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDI 110 The following BLAST results are available for this feature:
BLAST of FC876447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876447 ID=FC876447; Name=FC876447; organism=Citrus clementina; type=EST; length=617bpback to top |