FC876447

Overview
NameFC876447
Unique NameFC876447
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6024 contig Ccv1_Contig6024:11..627. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: Y1688_STAEQ (Probable DEAD-box ATP-dependent RNA helicase SERP1688 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP1688 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.747e-20
Identity = 47/107 (43.93%), Postives = 69/107 (64.49%), Query Frame = 3
Query:  294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            F  LG+++  VQT + +G + PTP+Q   IP  LEG D+LG AQTG+GKT AF +P++ ++     GV +L++ PTRELA Q+AEQ +    G  ++   V GGM +
Sbjct:    4 FKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEKVV-GQQGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPI 109          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: Y1679_STAES (Probable DEAD-box ATP-dependent RNA helicase SE_1679 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_1679 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.747e-20
Identity = 47/107 (43.93%), Postives = 69/107 (64.49%), Query Frame = 3
Query:  294 FAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            F  LG+++  VQT + +G + PTP+Q   IP  LEG D+LG AQTG+GKT AF +P++ ++     GV +L++ PTRELA Q+AEQ +    G  ++   V GGM +
Sbjct:    4 FKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPLIEKVV-GQQGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPI 109          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RH28_ARATH (DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana GN=RH28 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.747e-20
Identity = 54/127 (42.52%), Postives = 74/127 (58.27%), Query Frame = 3
Query:  255 PDPNSTTTDSTV----TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLA---LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            P P  +T D       TF  L L+   ++ C+ LG ++PTP+Q  CIP  L G+D+   A TGSGKTAAFALP L RL   P  V A   L++TPTRELA Q+    + L     ++C ++VGG+ +
Sbjct:  152 PKPFFSTVDGVSFHADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSV 278          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: RH28_ORYSJ (DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa subsp. japonica GN=Os12g0481100 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.726e-19
Identity = 50/109 (45.87%), Postives = 70/109 (64.22%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLA---LVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGM 608
            +F  L L+   ++ C+ LG ++PTP+Q  CIP  L G+D+ G A TGSGKTAAF+LP+L RL   P  V A   L++TPTRELA Q+    + L     +RC ++VGG+
Sbjct:  195 SFLELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERLLFRPKRVPAIRVLILTPTRELAAQVHSMIEKLAQFTDIRCCLIVGGL 303          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: CSHA_BACHK (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus thuringiensis subsp. konkukian GN=cshA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.944e-19
Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            TF  LGL++  +Q+ + +G    TP+Q   IP  L+GKD++G AQTG+GKTAAF LP+L ++      V  +VI PTRELA Q+ E+   +G    +R   + GG D+
Sbjct:    3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDI 110          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: CSHA_BACCZ (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ZK / E33L) GN=cshA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.944e-19
Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            TF  LGL++  +Q+ + +G    TP+Q   IP  L+GKD++G AQTG+GKTAAF LP+L ++      V  +VI PTRELA Q+ E+   +G    +R   + GG D+
Sbjct:    3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDI 110          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: CSHA_BACCR (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=cshA PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 2.944e-19
Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            TF  LGL++  +Q+ + +G    TP+Q   IP  L+GKD++G AQTG+GKTAAF LP+L ++      V  +VI PTRELA Q+ E+   +G    +R   + GG D+
Sbjct:    3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDI 110          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: CSHA_BACC1 (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ATCC 10987) GN=cshA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.944e-19
Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            TF  LGL++  +Q+ + +G    TP+Q   IP  L+GKD++G AQTG+GKTAAF LP+L ++      V  +VI PTRELA Q+ E+   +G    +R   + GG D+
Sbjct:    3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDI 110          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: CSHA_BACAN (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus anthracis GN=cshA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.944e-19
Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            TF  LGL++  +Q+ + +G    TP+Q   IP  L+GKD++G AQTG+GKTAAF LP+L ++      V  +VI PTRELA Q+ E+   +G    +R   + GG D+
Sbjct:    3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDI 110          
BLAST of FC876447 vs. ExPASy Swiss-Prot
Match: CSHA_BACAH (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus thuringiensis (strain Al Hakam) GN=cshA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.944e-19
Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 3
Query:  291 TFAGLGLAEWAVQTCKELGMRRPTPVQTHCIPKILEGKDVLGLAQTGSGKTAAFALPILHRLAEDPYGVLALVITPTRELAYQLAEQFKALGSGLHLRCEVVVGGMDL 614
            TF  LGL++  +Q+ + +G    TP+Q   IP  L+GKD++G AQTG+GKTAAF LP+L ++      V  +VI PTRELA Q+ E+   +G    +R   + GG D+
Sbjct:    3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDI 110          
The following BLAST results are available for this feature:
BLAST of FC876447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
Y1688_STAEQ7.747e-2043.93Probable DEAD-box ATP-dependent RNA helicase SERP1... [more]
Y1679_STAES7.747e-2043.93Probable DEAD-box ATP-dependent RNA helicase SE_16... [more]
RH28_ARATH7.747e-2042.52DEAD-box ATP-dependent RNA helicase 28 OS=Arabidop... [more]
RH28_ORYSJ1.726e-1945.87DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sa... [more]
CSHA_BACHK2.944e-1942.59DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACCZ2.944e-1942.59DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACCR2.944e-1942.59DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACC12.944e-1942.59DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACAN2.944e-1942.59DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACAH2.944e-1942.59DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]

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Properties
Property NameValue
Genbank descriptionC32004H06EF DevOvary1 Citrus clementina cDNA clone C32004H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876447 ID=FC876447; Name=FC876447; organism=Citrus clementina; type=EST; length=617bp
GACTGATTAGCAGTACACCCGAAAATCGAATCCTTGGCCTTCTCCAGTGG
AAATTACCTATATTCATAACCCTAACTGTAAAATTGTTGATTTATACTGA
CTGAGTAAACATGGACGAACAAATCCTCCTCGACGGGAACTTCCCTCTCT
TCGCCAAACCCAAATCTAAAACCAGAAGCAAACCGGAACCGCAACCTGAA
CCTGAACCGGAATCCAAAAACGCTAAAACCGCTCAACTCGAGAAATTCAC
AAATCCCGATCCTAACTCTACCACCACCGACTCCACCGTCACTTTCGCCG
GCCTCGGCCTCGCCGAATGGGCGGTTCAGACATGCAAGGAGCTTGGCATG
CGGCGGCCGACACCGGTCCAAACCCACTGCATACCCAAAATTCTCGAGGG
CAAGGACGTGCTGGGGCTGGCGCAGACCGGTAGCGGCAAAACCGCAGCGT
TCGCACTTCCGATACTCCACCGTTTGGCAGAGGACCCGTATGGGGTATTG
GCACTGGTTATAACGCCGACGAGGGAGCTGGCGTACCAGTTGGCGGAACA
GTTTAAGGCTCTGGGTTCGGGCTTGCATTTGAGGTGTGAGGTTGTGGTTG
GAGGAATGGATTTGTTG
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