FC876448
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSEAE (Diaminopimelate epimerase OS=Pseudomonas aeruginosa GN=dapF PE=3 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 7.006e-16 Identity = 46/101 (45.54%), Postives = 60/101 (59.41%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 L F K HGLGNDF+++D S + P+ + DRN GIG D ++ P D+ RIFN+DGSE E CGNG RCFARF+ + + L K+S V T Sbjct: 3 LRFTKMHGLGNDFMVLD-LVSQHAHVQPKHVKLWGDRNTGIGFDQLLIVEAPSSPDVDFRYRIFNADGSEVEQCGNGARCFARFVQD-KRLTVKKSIRVET 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSEA8 (Diaminopimelate epimerase OS=Pseudomonas aeruginosa (strain LESB58) GN=dapF PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 7.006e-16 Identity = 46/101 (45.54%), Postives = 60/101 (59.41%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 L F K HGLGNDF+++D S + P+ + DRN GIG D ++ P D+ RIFN+DGSE E CGNG RCFARF+ + + L K+S V T Sbjct: 3 LRFTKMHGLGNDFMVLD-LVSQHAHVQPKHVKLWGDRNTGIGFDQLLIVEAPSSPDVDFRYRIFNADGSEVEQCGNGARCFARFVQD-KRLTVKKSIRVET 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_METM5 (Diaminopimelate epimerase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=dapF PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 7.006e-16 Identity = 42/101 (41.58%), Postives = 65/101 (64.36%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEK-LCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 + F K HGLGND+I VD ++ P + K + DR+FGIG+DG++ +P + D+ MR+FNSDGSE EMCGN +RC +F+ + + + K + ++ T Sbjct: 1 MKFTKMHGLGNDYIYVDA--ISQKIENPNEISKFVSDRHFGIGSDGLVLILPS-DVADFKMRMFNSDGSEAEMCGNAIRCVGKFVYD-KKMTDKSTISIET 97
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_VIBSL (Diaminopimelate epimerase OS=Vibrio splendidus (strain LGP32) GN=dapF PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 9.149e-16 Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 2 Query: 329 HFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 HF K HGLGNDF++VD +P+ +L DR+ G+G D ++ P TD+ RIFN+DGSE E CGNG RCFARF+ ++ L K S V T Sbjct: 4 HFSKMHGLGNDFMVVDCITQNI-FFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRIFNADGSEVEQCGNGARCFARFV-RMKGLTNKYSINVST 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_RALPJ (Diaminopimelate epimerase OS=Ralstonia pickettii (strain 12J) GN=dapF PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 9.149e-16 Identity = 40/87 (45.98%), Postives = 52/87 (59.77%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 583 LHF K HG GNDF+++D T TPEQ + DR+FG+GAD ++ D+ RIFN DG E E CGNG RCF +F+ + Sbjct: 3 LHFTKMHGAGNDFVVLDGIQ-TPIDFTPEQWAAIADRHFGVGADQLLLVERSTRPDVDFRYRIFNHDGGEVEHCGNGARCFVKFVTD 88
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSEPW (Diaminopimelate epimerase OS=Pseudomonas putida (strain W619) GN=dapF PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 9.149e-16 Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 L F K HGLGNDF+++D S I P+ A++ DR+ GIG D ++ P D+ RIFN+DGSE E CGNG RCFARF+ + + L K+ V T Sbjct: 3 LRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPNNPEVDFRYRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKKRIRVET 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSEPG (Diaminopimelate epimerase OS=Pseudomonas putida (strain GB-1) GN=dapF PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 9.149e-16 Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 L F K HGLGNDF+++D S I P+ A++ DR+ GIG D ++ P D+ RIFN+DGSE E CGNG RCFARF+ + + L K+ V T Sbjct: 3 LRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPNNPEVDFRYRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKKRIRVET 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSEAB (Diaminopimelate epimerase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=dapF PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 9.149e-16 Identity = 45/101 (44.55%), Postives = 60/101 (59.41%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 L F K HGLGNDF+++D S + P+ + DRN G+G D ++ P D+ RIFN+DGSE E CGNG RCFARF+ + + L K+S V T Sbjct: 3 LRFTKMHGLGNDFMVLD-LVSQHAHVQPKHVKLWGDRNTGVGFDQLLIVEAPSSPDVDFRYRIFNADGSEVEQCGNGARCFARFVQD-KRLTVKKSIRVET 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSEA7 (Diaminopimelate epimerase OS=Pseudomonas aeruginosa (strain PA7) GN=dapF PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 9.149e-16 Identity = 45/101 (44.55%), Postives = 60/101 (59.41%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 L F K HGLGNDF+++D S + P+ + DRN G+G D ++ P D+ RIFN+DGSE E CGNG RCFARF+ + + L K+S V T Sbjct: 3 LRFTKMHGLGNDFMVLD-LVSQHAHVQPKHVKLWGDRNTGVGFDQLLIVEAPSSPDVDFRYRIFNADGSEVEQCGNGARCFARFVQD-KRLTVKKSIRVET 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_COLP3 (Diaminopimelate epimerase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=dapF PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 9.149e-16 Identity = 43/101 (42.57%), Postives = 62/101 (61.39%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 ++F K HGLGNDF+++DN ++PEQ K +RNFG+G D ++ P + D+ RI+N+DGSE CGNG RCFA+F+ ++ L K V T Sbjct: 3 VNFSKMHGLGNDFLVLDNVTQNV-FLSPEQITKFANRNFGVGFDQLLVVEPPYDPDLDFHYRIYNADGSEVGQCGNGARCFAKFV-RMKGLCNKHKIKVST 101 The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 318
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bpback to top |