FC876448

Overview
NameFC876448
Unique NameFC876448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSEAE (Diaminopimelate epimerase OS=Pseudomonas aeruginosa GN=dapF PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 7.006e-16
Identity = 46/101 (45.54%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDF+++D   S    + P+  +   DRN GIG D ++    P     D+  RIFN+DGSE E CGNG RCFARF+ + + L  K+S  V T
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHVQPKHVKLWGDRNTGIGFDQLLIVEAPSSPDVDFRYRIFNADGSEVEQCGNGARCFARFVQD-KRLTVKKSIRVET 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSEA8 (Diaminopimelate epimerase OS=Pseudomonas aeruginosa (strain LESB58) GN=dapF PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.006e-16
Identity = 46/101 (45.54%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDF+++D   S    + P+  +   DRN GIG D ++    P     D+  RIFN+DGSE E CGNG RCFARF+ + + L  K+S  V T
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHVQPKHVKLWGDRNTGIGFDQLLIVEAPSSPDVDFRYRIFNADGSEVEQCGNGARCFARFVQD-KRLTVKKSIRVET 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_METM5 (Diaminopimelate epimerase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=dapF PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.006e-16
Identity = 42/101 (41.58%), Postives = 65/101 (64.36%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEK-LCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGND+I VD    ++    P +  K + DR+FGIG+DG++  +P  +  D+ MR+FNSDGSE EMCGN +RC  +F+ + + +  K + ++ T
Sbjct:    1 MKFTKMHGLGNDYIYVDA--ISQKIENPNEISKFVSDRHFGIGSDGLVLILPS-DVADFKMRMFNSDGSEAEMCGNAIRCVGKFVYD-KKMTDKSTISIET 97          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_VIBSL (Diaminopimelate epimerase OS=Vibrio splendidus (strain LGP32) GN=dapF PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.149e-16
Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:  329 HFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            HF K HGLGNDF++VD         +P+   +L DR+ G+G D ++    P    TD+  RIFN+DGSE E CGNG RCFARF+  ++ L  K S  V T
Sbjct:    4 HFSKMHGLGNDFMVVDCITQNI-FFSPDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRIFNADGSEVEQCGNGARCFARFV-RMKGLTNKYSINVST 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_RALPJ (Diaminopimelate epimerase OS=Ralstonia pickettii (strain 12J) GN=dapF PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.149e-16
Identity = 40/87 (45.98%), Postives = 52/87 (59.77%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 583
            LHF K HG GNDF+++D    T    TPEQ   + DR+FG+GAD ++          D+  RIFN DG E E CGNG RCF +F+ +
Sbjct:    3 LHFTKMHGAGNDFVVLDGIQ-TPIDFTPEQWAAIADRHFGVGADQLLLVERSTRPDVDFRYRIFNHDGGEVEHCGNGARCFVKFVTD 88          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSEPW (Diaminopimelate epimerase OS=Pseudomonas putida (strain W619) GN=dapF PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.149e-16
Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDF+++D   S    I P+ A++  DR+ GIG D ++    P     D+  RIFN+DGSE E CGNG RCFARF+ + + L  K+   V T
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPNNPEVDFRYRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKKRIRVET 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSEPG (Diaminopimelate epimerase OS=Pseudomonas putida (strain GB-1) GN=dapF PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.149e-16
Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDF+++D   S    I P+ A++  DR+ GIG D ++    P     D+  RIFN+DGSE E CGNG RCFARF+ + + L  K+   V T
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRHTGIGFDQLLIVEAPNNPEVDFRYRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKKRIRVET 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSEAB (Diaminopimelate epimerase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=dapF PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.149e-16
Identity = 45/101 (44.55%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDF+++D   S    + P+  +   DRN G+G D ++    P     D+  RIFN+DGSE E CGNG RCFARF+ + + L  K+S  V T
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHVQPKHVKLWGDRNTGVGFDQLLIVEAPSSPDVDFRYRIFNADGSEVEQCGNGARCFARFVQD-KRLTVKKSIRVET 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSEA7 (Diaminopimelate epimerase OS=Pseudomonas aeruginosa (strain PA7) GN=dapF PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.149e-16
Identity = 45/101 (44.55%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDF+++D   S    + P+  +   DRN G+G D ++    P     D+  RIFN+DGSE E CGNG RCFARF+ + + L  K+S  V T
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHVQPKHVKLWGDRNTGVGFDQLLIVEAPSSPDVDFRYRIFNADGSEVEQCGNGARCFARFVQD-KRLTVKKSIRVET 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_COLP3 (Diaminopimelate epimerase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=dapF PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.149e-16
Identity = 43/101 (42.57%), Postives = 62/101 (61.39%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            ++F K HGLGNDF+++DN       ++PEQ  K  +RNFG+G D ++   P  +   D+  RI+N+DGSE   CGNG RCFA+F+  ++ L  K    V T
Sbjct:    3 VNFSKMHGLGNDFLVLDNVTQNV-FLSPEQITKFANRNFGVGFDQLLVVEPPYDPDLDFHYRIYNADGSEVGQCGNGARCFAKFV-RMKGLCNKHKIKVST 101          
The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DAPF_PSEAE7.006e-1645.54Diaminopimelate epimerase OS=Pseudomonas aeruginos... [more]
DAPF_PSEA87.006e-1645.54Diaminopimelate epimerase OS=Pseudomonas aeruginos... [more]
DAPF_METM57.006e-1641.58Diaminopimelate epimerase OS=Methanococcus maripal... [more]
DAPF_VIBSL9.149e-1646.00Diaminopimelate epimerase OS=Vibrio splendidus (st... [more]
DAPF_RALPJ9.149e-1645.98Diaminopimelate epimerase OS=Ralstonia pickettii (... [more]
DAPF_PSEPW9.149e-1645.54Diaminopimelate epimerase OS=Pseudomonas putida (s... [more]
DAPF_PSEPG9.149e-1645.54Diaminopimelate epimerase OS=Pseudomonas putida (s... [more]
DAPF_PSEAB9.149e-1644.55Diaminopimelate epimerase OS=Pseudomonas aeruginos... [more]
DAPF_PSEA79.149e-1644.55Diaminopimelate epimerase OS=Pseudomonas aeruginos... [more]
DAPF_COLP39.149e-1642.57Diaminopimelate epimerase OS=Colwellia psychreryth... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32004H07EF DevOvary1 Citrus clementina cDNA clone C32004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bp
GACTGTATCACACAAACTAAACCAACCACCGCATTTGACATTACCGCGAC
CAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATA
ACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCAC
TCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGAC
CATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCA
TCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTT
TCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCC
TCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACGGAACCTAGG
ATAACTCCGGAGCAAGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGG
GGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCACTGATTATA
CAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAAT
GGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAATTTAAATGG
GAAGCAAAGTTTCACTGTCCACACT
back to top