FC876448

Overview
NameFC876448
Unique NameFC876448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_TOLAT (Diaminopimelate epimerase OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=dapF PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.195e-15
Identity = 45/101 (44.55%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD     +     E  ++L DR+FGIG D ++   P  +   D+  RIFN+DGSE + CGNG RCFARF+  L+ L  K    V T
Sbjct:    3 IQFSKMHGLGNDFVVVDGVTQ-KVFFNAETLKRLGDRHFGIGFDQLLLVEPPYDPDLDFHYRIFNADGSEVQQCGNGARCFARFV-RLKGLTNKDRIAVST 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSEPK (Diaminopimelate epimerase OS=Pseudomonas putida (strain KT2440) GN=dapF PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.195e-15
Identity = 45/101 (44.55%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDF+++D   S    I P+ A++  DR+ G+G D ++    P     D+  RIFN+DGSE E CGNG RCFARF+ + + L  K+   V T
Sbjct:    3 LRFTKMHGLGNDFMVLD-LVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEAPNNPEVDFRYRIFNADGSEVEQCGNGARCFARFVLD-KRLTAKKRIRVET 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PASMU (Diaminopimelate epimerase OS=Pasteurella multocida GN=dapF PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.195e-15
Identity = 45/101 (44.55%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE  ++L DR+ GIG D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MQFSKMHGLGNDFVVVD-AITQNLYFSPETIKRLADRHRGIGFDQMLIVEPPYDPDLDFHYRIFNADGSEVSQCGNGARCFARFVT-LKGLTDKKDIAVST 99          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ALKOO (Diaminopimelate epimerase OS=Alkaliphilus oremlandii (strain OhILAs) GN=dapF PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.195e-15
Identity = 45/100 (45.00%), Postives = 61/100 (61.00%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K  G GNDFI+V   +        + AEK+CDR+FGIGADG++   P  +  D  M  +NSDGS   MCGNG+RCF++F+ +   L  KQ F+V T
Sbjct:    3 VQFKKMQGTGNDFIVVKYDDFPFEEKLSQLAEKICDRHFGIGADGLLIVNPS-SIADIRMDYYNSDGSIAAMCGNGIRCFSKFVFDEGFLRTKQ-FSVET 100          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ALISL (Diaminopimelate epimerase OS=Aliivibrio salmonicida (strain LFI1238) GN=dapF PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.195e-15
Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:  329 HFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            HF K HGLGNDF++VD         +P+   +L DRN GIG D ++    P    TD+  RIFNSDG+E E CGNG RCFARF+  ++ L  + +  V T
Sbjct:    4 HFSKMHGLGNDFMVVDCLTQNI-FFSPDLIRRLADRNRGIGFDQLLVVEAPYDPETDFHYRIFNSDGTEVEQCGNGARCFARFV-RMKGLTNRTTILVST 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_VIBVY (Diaminopimelate epimerase OS=Vibrio vulnificus (strain YJ016) GN=dapF PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.561e-15
Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:  329 HFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            HF K HGLGNDF++VD         + E   +L DR+ G+G D ++    P    TD+  RIFN+DGSE E CGNG RCFARF+  ++ L  K S +V T
Sbjct:    4 HFSKMHGLGNDFMVVDCITQNV-YFSQELIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRIFNADGSEVEQCGNGARCFARFV-RMKGLTNKYSISVST 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_VIBVU (Diaminopimelate epimerase OS=Vibrio vulnificus GN=dapF PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.561e-15
Identity = 46/100 (46.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:  329 HFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            HF K HGLGNDF++VD         + E   +L DR+ G+G D ++    P    TD+  RIFN+DGSE E CGNG RCFARF+  ++ L  K S +V T
Sbjct:    4 HFSKMHGLGNDFMVVDCITQNV-YFSQELIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRIFNADGSEVEQCGNGARCFARFV-RMKGLTNKYSISVST 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SODGM (Diaminopimelate epimerase OS=Sodalis glossinidius (strain morsitans) GN=dapF PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.038e-15
Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  ++NL  K+   V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVYFSPEMIRRLSDRHCGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV-RMKNLTNKRDIHVST 99          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_RALEJ (Diaminopimelate epimerase OS=Ralstonia eutropha (strain JMP134) GN=dapF PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.038e-15
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTV 619
            L F K HG GNDF+++D  +  +  +T EQ   L  R+FG+GAD ++    P     D+  RIFN+DGSE E CGNG RCF RF+ + + +  K+S  V
Sbjct:    3 LQFTKMHGAGNDFVVLDGIHQ-KLDLTTEQWRALASRHFGVGADQMLIVEKPTREDVDFRYRIFNADGSEVEHCGNGARCFVRFVTD-KGMTDKRSVRV 99          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_METPP (Diaminopimelate epimerase OS=Methylibium petroleiphilum (strain PM1) GN=dapF PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.038e-15
Identity = 47/102 (46.08%), Postives = 59/102 (57.84%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEP-RITPEQAEKLCDRNFGIGADGV-IFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K  G GNDF+++D   + EP  ++P Q   L DR FG+GAD V I       G D+T RI N+DGSE E CGNG RCF R++ E   L  K +  V T
Sbjct:    3 LRFTKMQGAGNDFVVLDA--TREPLTLSPAQYRYLADRRFGVGADQVLIVGASDEPGIDFTYRIVNADGSEVEQCGNGARCFVRYVRE-AGLTKKSAIRVRT 101          
The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DAPF_TOLAT1.195e-1544.55Diaminopimelate epimerase OS=Tolumonas auensis (st... [more]
DAPF_PSEPK1.195e-1544.55Diaminopimelate epimerase OS=Pseudomonas putida (s... [more]
DAPF_PASMU1.195e-1544.55Diaminopimelate epimerase OS=Pasteurella multocida... [more]
DAPF_ALKOO1.195e-1545.00Diaminopimelate epimerase OS=Alkaliphilus oremland... [more]
DAPF_ALISL1.195e-1546.00Diaminopimelate epimerase OS=Aliivibrio salmonicid... [more]
DAPF_VIBVY1.561e-1546.00Diaminopimelate epimerase OS=Vibrio vulnificus (st... [more]
DAPF_VIBVU1.561e-1546.00Diaminopimelate epimerase OS=Vibrio vulnificus GN=... [more]
DAPF_SODGM2.038e-1543.56Diaminopimelate epimerase OS=Sodalis glossinidius ... [more]
DAPF_RALEJ2.038e-1543.43Diaminopimelate epimerase OS=Ralstonia eutropha (s... [more]
DAPF_METPP2.038e-1546.08Diaminopimelate epimerase OS=Methylibium petroleip... [more]

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Properties
Property NameValue
Genbank descriptionC32004H07EF DevOvary1 Citrus clementina cDNA clone C32004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bp
GACTGTATCACACAAACTAAACCAACCACCGCATTTGACATTACCGCGAC
CAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATA
ACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCAC
TCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGAC
CATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCA
TCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTT
TCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCC
TCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACGGAACCTAGG
ATAACTCCGGAGCAAGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGG
GGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCACTGATTATA
CAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAAT
GGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAATTTAAATGG
GAAGCAAAGTTTCACTGTCCACACT
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