FC876448

Overview
NameFC876448
Unique NameFC876448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_CUPTR (Diaminopimelate epimerase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=dapF PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.662e-15
Identity = 43/99 (43.43%), Postives = 59/99 (59.60%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTV 619
            L F K HG GNDF+++D  +  +  +TP Q   L  R+FG+GAD ++    P     D+  RI N+DGSE E CGNG RCF RF+ E + +  K+S  V
Sbjct:    3 LKFTKMHGAGNDFVVLDGIHQ-QIDLTPAQWRALASRHFGVGADQILIVEKPTRPDVDFRYRIVNADGSEVEHCGNGARCFVRFVTE-QGMTDKRSVRV 99          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_VIBCH (Diaminopimelate epimerase OS=Vibrio cholerae GN=dapF PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.477e-15
Identity = 45/99 (45.45%), Postives = 61/99 (61.62%), Query Frame = 2
Query:  329 HFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVH 622
            HF K HGLGNDF++VD         +PE   +L DR+ G+G D ++    P    +D+  RIFN+DGSE E CGNG RCFARF+  ++ L  K  +T+H
Sbjct:    4 HFSKMHGLGNDFMVVDCITQNV-FFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYRIFNADGSEVEQCGNGARCFARFV-RMKGLTNK--YTIH 98          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_VIBC3 (Diaminopimelate epimerase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.477e-15
Identity = 45/99 (45.45%), Postives = 61/99 (61.62%), Query Frame = 2
Query:  329 HFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVH 622
            HF K HGLGNDF++VD         +PE   +L DR+ G+G D ++    P    +D+  RIFN+DGSE E CGNG RCFARF+  ++ L  K  +T+H
Sbjct:    4 HFSKMHGLGNDFMVVDCITQNV-FFSPELIRRLADRHTGVGFDQLLVVEAPYDPESDFHYRIFNADGSEVEQCGNGARCFARFV-RMKGLTNK--YTIH 98          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SERP5 (Diaminopimelate epimerase OS=Serratia proteamaculans (strain 568) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.477e-15
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVYFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVST 99          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_RALEH (Diaminopimelate epimerase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.477e-15
Identity = 42/99 (42.42%), Postives = 59/99 (59.60%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTV 619
            L F K HG GNDF+++D  +  +  +TP Q   L  R+FG+GAD ++    P     D+  RI N+DGSE E CGNG RCF RF+ + + +  K+S  V
Sbjct:    3 LQFTKMHGAGNDFVVLDGIHQ-QIDLTPAQWRALASRHFGVGADQILIVEKPSRPDVDFRYRIVNADGSEVEHCGNGARCFVRFVTD-KGMTDKRSVRV 99          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_HAES2 (Diaminopimelate epimerase OS=Haemophilus somnus (strain 2336) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.477e-15
Identity = 47/103 (45.63%), Postives = 61/103 (59.22%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVD--NRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +N   P    E  ++L DRN GIG D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MQFSKMHGLGNDFVVVDAVTQNIYFPT---EVIKRLADRNRGIGFDQLLVVEPPYDPDLDFHYRIFNADGSEVSQCGNGARCFARFVV-LKGLTNKKEIAVST 99          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_HAEIN (Diaminopimelate epimerase OS=Haemophilus influenzae GN=dapF PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.477e-15
Identity = 45/101 (44.55%), Postives = 59/101 (58.42%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD         TPE   +L +R+ GIG D ++    P     D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+  +V T
Sbjct:    1 MQFSKMHGLGNDFVVVDGVTQNV-FFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHYRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKKDISVST 99          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_HAEIG (Diaminopimelate epimerase OS=Haemophilus influenzae (strain PittGG) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.477e-15
Identity = 45/101 (44.55%), Postives = 59/101 (58.42%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD         TPE   +L +R+ GIG D ++    P     D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+  +V T
Sbjct:    1 MQFSKMHGLGNDFVVVDGVTQNV-FFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHYRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKKDISVST 99          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_HAEI8 (Diaminopimelate epimerase OS=Haemophilus influenzae (strain 86-028NP) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.477e-15
Identity = 45/101 (44.55%), Postives = 59/101 (58.42%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD         TPE   +L +R+ GIG D ++    P     D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+  +V T
Sbjct:    1 MQFSKMHGLGNDFVVVDGVTQNV-FFTPETIRRLANRHCGIGFDQLLIVEAPYDPELDFHYRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKKDISVST 99          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ENT38 (Diaminopimelate epimerase OS=Enterobacter sp. (strain 638) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.477e-15
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHVGVGFDQLLVVEPPYDPDLDFHYRIFNADGSEVSQCGNGARCFARFV-RLKGLTNKRDICVST 99          
The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DAPF_CUPTR2.662e-1543.43Diaminopimelate epimerase OS=Cupriavidus taiwanens... [more]
DAPF_VIBCH3.477e-1545.45Diaminopimelate epimerase OS=Vibrio cholerae GN=da... [more]
DAPF_VIBC33.477e-1545.45Diaminopimelate epimerase OS=Vibrio cholerae serot... [more]
DAPF_SERP53.477e-1543.56Diaminopimelate epimerase OS=Serratia proteamacula... [more]
DAPF_RALEH3.477e-1542.42Diaminopimelate epimerase OS=Ralstonia eutropha (s... [more]
DAPF_HAES23.477e-1545.63Diaminopimelate epimerase OS=Haemophilus somnus (s... [more]
DAPF_HAEIN3.477e-1544.55Diaminopimelate epimerase OS=Haemophilus influenza... [more]
DAPF_HAEIG3.477e-1544.55Diaminopimelate epimerase OS=Haemophilus influenza... [more]
DAPF_HAEI83.477e-1544.55Diaminopimelate epimerase OS=Haemophilus influenza... [more]
DAPF_ENT383.477e-1543.56Diaminopimelate epimerase OS=Enterobacter sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionC32004H07EF DevOvary1 Citrus clementina cDNA clone C32004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bp
GACTGTATCACACAAACTAAACCAACCACCGCATTTGACATTACCGCGAC
CAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATA
ACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCAC
TCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGAC
CATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCA
TCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTT
TCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCC
TCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACGGAACCTAGG
ATAACTCCGGAGCAAGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGG
GGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCACTGATTATA
CAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAAT
GGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAATTTAAATGG
GAAGCAAAGTTTCACTGTCCACACT
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