FC876448

Overview
NameFC876448
Unique NameFC876448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ECOL5 (Diaminopimelate epimerase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ECOHS (Diaminopimelate epimerase OS=Escherichia coli O9:H4 (strain HS) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ECODH (Diaminopimelate epimerase OS=Escherichia coli (strain K12 / DH10B) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ECOBW (Diaminopimelate epimerase OS=Escherichia coli (strain K12 / BW2952) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ECO8A (Diaminopimelate epimerase OS=Escherichia coli O8 (strain IAI1) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ECO81 (Diaminopimelate epimerase OS=Escherichia coli O81 (strain ED1a) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNTDGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ECO7I (Diaminopimelate epimerase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ECO5E (Diaminopimelate epimerase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ECO57 (Diaminopimelate epimerase OS=Escherichia coli O157:H7 GN=dapF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ECO55 (Diaminopimelate epimerase OS=Escherichia coli (strain 55989 / EAEC) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVST 99
The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DAPF_ECOL54.541e-1543.56Diaminopimelate epimerase OS=Escherichia coli O6:K... [more]
DAPF_ECOHS4.541e-1543.56Diaminopimelate epimerase OS=Escherichia coli O9:H... [more]
DAPF_ECODH4.541e-1543.56Diaminopimelate epimerase OS=Escherichia coli (str... [more]
DAPF_ECOBW4.541e-1543.56Diaminopimelate epimerase OS=Escherichia coli (str... [more]
DAPF_ECO8A4.541e-1543.56Diaminopimelate epimerase OS=Escherichia coli O8 (... [more]
DAPF_ECO814.541e-1543.56Diaminopimelate epimerase OS=Escherichia coli O81 ... [more]
DAPF_ECO7I4.541e-1543.56Diaminopimelate epimerase OS=Escherichia coli O7:K... [more]
DAPF_ECO5E4.541e-1543.56Diaminopimelate epimerase OS=Escherichia coli O157... [more]
DAPF_ECO574.541e-1543.56Diaminopimelate epimerase OS=Escherichia coli O157... [more]
DAPF_ECO554.541e-1543.56Diaminopimelate epimerase OS=Escherichia coli (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32004H07EF DevOvary1 Citrus clementina cDNA clone C32004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bp
GACTGTATCACACAAACTAAACCAACCACCGCATTTGACATTACCGCGAC
CAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATA
ACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCAC
TCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGAC
CATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCA
TCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTT
TCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCC
TCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACGGAACCTAGG
ATAACTCCGGAGCAAGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGG
GGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCACTGATTATA
CAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAAT
GGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAATTTAAATGG
GAAGCAAAGTTTCACTGTCCACACT
back to top