FC876448

Overview
NameFC876448
Unique NameFC876448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ECO45 (Diaminopimelate epimerase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ECO27 (Diaminopimelate epimerase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ECO24 (Diaminopimelate epimerase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_AERS4 (Diaminopimelate epimerase OS=Aeromonas salmonicida (strain A449) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 45/101 (44.55%), Postives = 61/101 (60.40%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD     +   + +  +KL DR+FGIG D ++   P  +   D+  RIFN+DGSE E CGNG RCFARF+  L+ L  +    V T
Sbjct:    3 IDFSKMHGLGNDFMVVDGVTQ-KVFFSNDVIKKLADRHFGIGFDQLLLVEPPYDPELDFHYRIFNADGSEVEQCGNGARCFARFV-RLKGLINRDRIAVST 101
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ACTP7 (Diaminopimelate epimerase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=dapF PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 44/101 (43.56%), Postives = 59/101 (58.42%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF+++D        +T +   KL DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  KQ   V T
Sbjct:    1 MQFSKMHGLGNDFMVIDGVTQNV-YLTEDVIRKLADRHRGVGFDQLLLVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFVT-LKGLTNKQDIHVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_VIBHB (Diaminopimelate epimerase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.931e-15
Identity = 45/100 (45.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:  329 HFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            HF K HGLGNDF++VD         + +   +L DR+ G+G D ++    P    TD+  RIFN+DGSE E CGNG RCFARF+  L+ L  + S +V T
Sbjct:    4 HFSKMHGLGNDFMVVDCITQNV-FFSQDLIRRLADRHTGVGFDQLLVVEAPYDPETDFHYRIFNADGSEVEQCGNGARCFARFV-RLKGLTNRYSISVST 101
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SHIB3 (Diaminopimelate epimerase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.931e-15
Identity = 44/101 (43.56%), Postives = 60/101 (59.41%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPELIRRLADRHLGVGFDQLLVIEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKRDIRVST 99
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSYCK (Diaminopimelate epimerase OS=Psychrobacter cryohalolentis (strain K5) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.931e-15
Identity = 43/101 (42.57%), Postives = 62/101 (61.39%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF+++D   +    +T +  + L DR+ GIG D ++   P +    D++ RIFN+DG+E E CGNG RCFARF+ +   L+ KQ   V T
Sbjct:    3 IEFTKMHGLGNDFMVID-LVTQRLDLTKDLVQLLGDRHLGIGFDQLLVVEPPMRPDVDFSYRIFNTDGTEVEQCGNGARCFARFV-QARKLSFKQRLRVET 101
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSYA2 (Diaminopimelate epimerase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.931e-15
Identity = 43/101 (42.57%), Postives = 62/101 (61.39%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF+++D   +    +T +  + L DR+ GIG D ++   P +    D++ RIFN+DG+E E CGNG RCFARF+ +   L+ KQ   V T
Sbjct:    3 IEFTKMHGLGNDFMVID-LVTQRLDLTKDLVQLLGDRHLGIGFDQLLVVEPPMRPDVDFSYRIFNTDGTEVEQCGNGARCFARFV-QARKLSFKQRLRVET 101
[Close]
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_DESRM (Diaminopimelate epimerase OS=Desulfotomaculum reducens (strain MI-1) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.931e-15
Identity = 42/87 (48.28%), Postives = 57/87 (65.52%), Query Frame = 2 
Query:  326 LHFVKYHGLGNDFILVD---NRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFI 577
            ++F K HGLGNDFILV+    +  T+   T   A+++CDR FGIGADG++         D  M+I NSDGSE EMCGN +RC A+++
Sbjct:    1 MYFTKVHGLGNDFILVNAGTGQGFTDDCST--LAKEVCDRKFGIGADGLVLLYDS-GVADVRMKIVNSDGSEAEMCGNAIRCVAKYL 84
The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DAPF_ECO454.541e-1543.56Diaminopimelate epimerase OS=Escherichia coli O45:... [more]
DAPF_ECO274.541e-1543.56Diaminopimelate epimerase OS=Escherichia coli O127... [more]
DAPF_ECO244.541e-1543.56Diaminopimelate epimerase OS=Escherichia coli O139... [more]
DAPF_AERS44.541e-1544.55Diaminopimelate epimerase OS=Aeromonas salmonicida... [more]
DAPF_ACTP74.541e-1543.56Diaminopimelate epimerase OS=Actinobacillus pleuro... [more]
DAPF_VIBHB5.931e-1545.00Diaminopimelate epimerase OS=Vibrio harveyi (strai... [more]
DAPF_SHIB35.931e-1543.56Diaminopimelate epimerase OS=Shigella boydii serot... [more]
DAPF_PSYCK5.931e-1542.57Diaminopimelate epimerase OS=Psychrobacter cryohal... [more]
DAPF_PSYA25.931e-1542.57Diaminopimelate epimerase OS=Psychrobacter arcticu... [more]
DAPF_DESRM5.931e-1548.28Diaminopimelate epimerase OS=Desulfotomaculum redu... [more]

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Properties
Property NameValue
Genbank descriptionC32004H07EF DevOvary1 Citrus clementina cDNA clone C32004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bp
GACTGTATCACACAAACTAAACCAACCACCGCATTTGACATTACCGCGAC
CAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATA
ACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCAC
TCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGAC
CATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCA
TCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTT
TCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCC
TCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACGGAACCTAGG
ATAACTCCGGAGCAAGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGG
GGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCACTGATTATA
CAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAAT
GGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAATTTAAATGG
GAAGCAAAGTTTCACTGTCCACACT
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