FC876448

Overview
NameFC876448
Unique NameFC876448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_CLOAB (Diaminopimelate epimerase OS=Clostridium acetobutylicum GN=dapF PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.931e-15
Identity = 46/111 (41.44%), Postives = 65/111 (58.56%), Query Frame = 2
Query:  311 RESGFL---HFVKYHGLGNDFILVDNRNST---EPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            RE  F+   + +K HG GNDFIL+D  N+    +     + A + C+R   IG DG++F     +  D  MRIFN+DGSE EMCGNG+RC  R++ E+ N   K+S  + T
Sbjct:    6 REDAFIVEINILKCHGTGNDFILIDEYNNNYNLDDETRRDIAIQACNRAKFIGGDGILFVQKS-DICDAKMRIFNADGSEAEMCGNGLRCVGRYVIEMLN---KESVEIET 112          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_VESOH (Diaminopimelate epimerase OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.746e-15
Identity = 43/101 (42.57%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            ++F K HGLGNDF++VDN  + +     ++   L +R FGIG D ++      + G D+   I+NS+GSE E CGNG RCFARF+   +NL      TV T
Sbjct:    3 INFTKMHGLGNDFMVVDNL-AGDITFNAKKITNLANRAFGIGFDQLLVVETSNIRGVDFRYVIYNSNGSEVEQCGNGARCFARFV-NYKNLTHSNPITVKT 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_HAEPS (Diaminopimelate epimerase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.746e-15
Identity = 44/101 (43.56%), Postives = 58/101 (57.43%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF+++D        +T E   K  DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  KQ   V T
Sbjct:    1 MQFSKMHGLGNDFMVIDGVTQNV-YLTEELIRKWADRHRGVGFDQLLLVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFVT-LKGLTNKQDIGVST 99          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_HAEDU (Diaminopimelate epimerase OS=Haemophilus ducreyi GN=dapF PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.746e-15
Identity = 42/101 (41.58%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF+++D        +T +   KL DR++G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF++ L+ L  +    V T
Sbjct:    1 MQFSKMHGLGNDFMVIDGVTQNV-YLTEDMIRKLADRHYGVGFDQLLLVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFVS-LKGLINRSDMYVST 99          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PHOPR (Diaminopimelate epimerase OS=Photobacterium profundum GN=dapF PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.012e-14
Identity = 45/101 (44.55%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNG-TDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            ++F K HGLGNDF++VD         +P    +L DR+ GIG D ++   P  +  TD+  RIFN+DGSE E CGNG RCFARF+  ++ L  K    V T
Sbjct:    3 INFSKMHGLGNDFMVVDCVTQNV-FFSPAAIRRLADRHRGIGFDQLLVVEPPYDPETDFHYRIFNADGSEVEQCGNGARCFARFV-WMKGLTNKYQVAVST 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_LEGPL (Diaminopimelate epimerase OS=Legionella pneumophila (strain Lens) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.012e-14
Identity = 45/101 (44.55%), Postives = 58/101 (57.43%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADG-VIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDFI++D  N +  ++T EQ +KL +R+ GIG D  ++       G D+  RIFN+DG E   CGNG RC A F A    L  K   TV T
Sbjct:    3 IKFTKMHGLGNDFIVLDGVNQSI-QLTVEQIQKLANRHTGIGFDQCLLIESSQTEGIDFNYRIFNADGQEVGQCGNGARCIALF-ARYYGLTAKNKLTVAT 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_LEGPH (Diaminopimelate epimerase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.012e-14
Identity = 45/101 (44.55%), Postives = 58/101 (57.43%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADG-VIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDFI++D  N +  ++T EQ +KL +R+ GIG D  ++       G D+  RIFN+DG E   CGNG RC A F A    L  K   TV T
Sbjct:    3 IKFTKMHGLGNDFIVLDGVNQSI-QLTVEQIQKLANRHTGIGFDQCLLIESSQTEGIDFNYRIFNADGQEVGQCGNGARCIALF-ARYYGLTAKNKLTVAT 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_LEGPC (Diaminopimelate epimerase OS=Legionella pneumophila (strain Corby) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.012e-14
Identity = 45/101 (44.55%), Postives = 58/101 (57.43%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADG-VIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDFI++D  N +  ++T EQ +KL +R+ GIG D  ++       G D+  RIFN+DG E   CGNG RC A F A    L  K   TV T
Sbjct:    3 IKFTKMHGLGNDFIVLDGVNQSI-QLTVEQIQKLANRHTGIGFDQCLLIESSQTEGIDFNYRIFNADGQEVGQCGNGARCIALF-ARYYGLTAKNKLTVAT 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ENTS8 (Diaminopimelate epimerase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.012e-14
Identity = 43/101 (42.57%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +P+   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVFFSPDMIRRLADRHQGVGFDQLLVVEPPYDPDLDFHYRIFNADGSEVAQCGNGARCFARFV-RLKGLTNKREIRVST 99          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_EDWI9 (Diaminopimelate epimerase OS=Edwardsiella ictaluri (strain 93-146) GN=dapF PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.012e-14
Identity = 42/101 (41.58%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++   P  +   D+  RIFN+DGSE   CGNG RCFARF+  ++ L  ++   V T
Sbjct:    1 MQFAKMHGLGNDFMVVD-AVTQNVYFSPELIRRLADRHTGVGFDQLLVVEPPYDPDLDFHYRIFNADGSEVAQCGNGARCFARFV-RIKGLTNRRDIRVST 99          
The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DAPF_CLOAB5.931e-1541.44Diaminopimelate epimerase OS=Clostridium acetobuty... [more]
DAPF_VESOH7.746e-1542.57Diaminopimelate epimerase OS=Vesicomyosocius okuta... [more]
DAPF_HAEPS7.746e-1543.56Diaminopimelate epimerase OS=Haemophilus parasuis ... [more]
DAPF_HAEDU7.746e-1541.58Diaminopimelate epimerase OS=Haemophilus ducreyi G... [more]
DAPF_PHOPR1.012e-1444.55Diaminopimelate epimerase OS=Photobacterium profun... [more]
DAPF_LEGPL1.012e-1444.55Diaminopimelate epimerase OS=Legionella pneumophil... [more]
DAPF_LEGPH1.012e-1444.55Diaminopimelate epimerase OS=Legionella pneumophil... [more]
DAPF_LEGPC1.012e-1444.55Diaminopimelate epimerase OS=Legionella pneumophil... [more]
DAPF_ENTS81.012e-1442.57Diaminopimelate epimerase OS=Enterobacter sakazaki... [more]
DAPF_EDWI91.012e-1441.58Diaminopimelate epimerase OS=Edwardsiella ictaluri... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32004H07EF DevOvary1 Citrus clementina cDNA clone C32004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bp
GACTGTATCACACAAACTAAACCAACCACCGCATTTGACATTACCGCGAC
CAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATA
ACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCAC
TCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGAC
CATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCA
TCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTT
TCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCC
TCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACGGAACCTAGG
ATAACTCCGGAGCAAGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGG
GGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCACTGATTATA
CAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAAT
GGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAATTTAAATGG
GAAGCAAAGTTTCACTGTCCACACT
back to top