FC876448
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PHOLL (Diaminopimelate epimerase OS=Photorhabdus luminescens subsp. laumondii GN=dapF PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 8.564e-14 Identity = 44/101 (43.56%), Postives = 59/101 (58.42%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 + F K HGLGNDF++VD + +PE +L DR+ G+G D ++ P D+ RIFN+DGSE CGNG RCFARF+ L+ L K+ V T Sbjct: 1 MQFSKMHGLGNDFMVVD-AVTQNVYFSPELICRLADRHTGVGFDQLLIVEAPYDPDMDFHYRIFNADGSEVAQCGNGARCFARFV-RLKGLINKRDIKVST 99
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_HALHL (Diaminopimelate epimerase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=dapF PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.118e-13 Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 583 + F K LGNDF+++D +TPE L DR G+G D ++ A P + D RIFN+DG+E E CGNGVRC ARF+ + Sbjct: 1 MRFTKMEALGNDFVVLDGIRQ-RLHLTPETIRTLADRRRGVGCDQLLIAEPPAHIAADVRYRIFNADGTEVEHCGNGVRCLARFLVD 86
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SPHWW (Diaminopimelate epimerase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=dapF PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.461e-13 Identity = 40/95 (42.11%), Postives = 53/95 (55.79%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFI---AELENLNG 601 + F K HGLGNDF+++D R + +T +A L DR G+G D +I P D MRIFN+DGSE E CGN RC + A +E + G Sbjct: 3 VRFHKMHGLGNDFVVIDARATAPVEMTAARARALADRKTGVGCDQLILLEPSA-VADARMRIFNADGSEVEACGNATRCVVSLLGGSARIETVAG 96
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_LEIXX (Diaminopimelate epimerase OS=Leifsonia xyli subsp. xyli GN=dapF PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.461e-13 Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN------------GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 583 LHF K G GNDF+L + + T P ++ Q ++CDR+FG+GADGVI A+ ++ M +N+DGS EMCGNG+R + R++ E Sbjct: 4 LHFTKGQGTGNDFVLYADPDGTLP-LSAGQIAEICDRHFGVGADGVIRAVRSKRLPEGAEALADDEAAEWFMDYYNADGSAAEMCGNGIRVYVRYLIE 100
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ENTFA (Diaminopimelate epimerase OS=Enterococcus faecalis GN=dapF PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.461e-13 Identity = 47/103 (45.63%), Postives = 61/103 (59.22%), Query Frame = 2 Query: 338 KYHGLGNDFILVDNRNSTEPRITPEQAEKL----CDRNFGI--GADGVIFAMPGVNGTDYT-MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 K HG NDF L+D E +T E+ E+L C R G+ GADG++ G +GT MR+ NSDGSE MCGNG+R AR++AE N ++SFTV T Sbjct: 7 KVHGSENDFFLLDE-TQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGTHGTSNARMRVINSDGSEASMCGNGLRTVARYLAE---KNQEKSFTVET 105
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_RHOFD (Diaminopimelate epimerase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=dapF PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.908e-13 Identity = 41/101 (40.59%), Postives = 58/101 (57.43%), Query Frame = 2 Query: 332 FVKYHGLGNDFILVDNRNSTEPR--ITPEQAEKLCDRNFGIGADGVIFAMPG-VNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 F K G GNDF+++D T+ R ++ L DR+FG+GAD ++ P G D+ I N+DG+E E CGNG RCFARF+ + + L K + V T Sbjct: 5 FTKMQGAGNDFVVLDE---TQGRFGLSTAHYRLLADRHFGVGADQILTVRPSPAPGIDFEYLIHNADGAEVEQCGNGARCFARFVRD-QGLTAKDAIRVQT 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_AZOPC (Diaminopimelate epimerase OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=dapF PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.908e-13 Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQ-AEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 + F K HG GND+I +D E PE+ A +L DR+ GIG+DG++ MP + + MR+FNSDGSE +MCGN +RC +++ + K + T+ T Sbjct: 1 MKFTKMHGAGNDYIYIDCFK--EKIDCPEELAIRLSDRHKGIGSDGLVLIMPS-DKCSFRMRMFNSDGSEAQMCGNAIRCVGKYVYD-NGYTRKLNITIET 97
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BACWK (Diaminopimelate epimerase OS=Bacillus weihenstephanensis (strain KBAB4) GN=dapF PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.492e-13 Identity = 46/102 (45.10%), Postives = 61/102 (59.80%), Query Frame = 2 Query: 332 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 F K HGLGN +I V N E +I E AEK+ + N GIGADG+I P + MR+FN+DGSE + CGNG+RC A++ E + + GK FT+ T Sbjct: 6 FTKMHGLGNSYIYV---NMFEEQIREEDLAIVAEKVSNINTGIGADGMILICPS-DVAPVKMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEGK-VFTIET 102
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BACCN (Diaminopimelate epimerase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=dapF PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.492e-13 Identity = 46/102 (45.10%), Postives = 59/102 (57.84%), Query Frame = 2 Query: 332 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 F K HGLGN +I V N E I E+ AEK+ +RN GIGADG+I P MR+FN+DGSE + CGNG+RC A++ E L + FT+ T Sbjct: 6 FTKMHGLGNSYIYV---NMFEEHIPEEELALVAEKVSNRNTGIGADGMILICPS-EVAPVKMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEETIFTIET 102
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_RUTMC (Diaminopimelate epimerase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=dapF PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.254e-13 Identity = 40/101 (39.60%), Postives = 58/101 (57.43%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 ++FVK HGLGNDF++VDN + + EQ L +R+ GIG D ++ D+ I+N+DG E E CGNG RCFA F+++ + L+ V T Sbjct: 3 INFVKMHGLGNDFMMVDNL-AGDITFNAEQIANLANRHLGIGFDQLLLVETSNTKNVDFRYVIYNADGLEVEQCGNGARCFAFFVSK-KGLSNNNPIVVET 101 The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 318
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bpback to top |