FC876448

Overview
NameFC876448
Unique NameFC876448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PHOLL (Diaminopimelate epimerase OS=Photorhabdus luminescens subsp. laumondii GN=dapF PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.564e-14
Identity = 44/101 (43.56%), Postives = 59/101 (58.42%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   +     +PE   +L DR+ G+G D ++    P     D+  RIFN+DGSE   CGNG RCFARF+  L+ L  K+   V T
Sbjct:    1 MQFSKMHGLGNDFMVVD-AVTQNVYFSPELICRLADRHTGVGFDQLLIVEAPYDPDMDFHYRIFNADGSEVAQCGNGARCFARFV-RLKGLINKRDIKVST 99          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_HALHL (Diaminopimelate epimerase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=dapF PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.118e-13
Identity = 38/87 (43.68%), Postives = 51/87 (58.62%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 583
            + F K   LGNDF+++D        +TPE    L DR  G+G D ++ A P  +   D   RIFN+DG+E E CGNGVRC ARF+ +
Sbjct:    1 MRFTKMEALGNDFVVLDGIRQ-RLHLTPETIRTLADRRRGVGCDQLLIAEPPAHIAADVRYRIFNADGTEVEHCGNGVRCLARFLVD 86          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SPHWW (Diaminopimelate epimerase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=dapF PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.461e-13
Identity = 40/95 (42.11%), Postives = 53/95 (55.79%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFI---AELENLNG 601
            + F K HGLGNDF+++D R +    +T  +A  L DR  G+G D +I   P     D  MRIFN+DGSE E CGN  RC    +   A +E + G
Sbjct:    3 VRFHKMHGLGNDFVVIDARATAPVEMTAARARALADRKTGVGCDQLILLEPSA-VADARMRIFNADGSEVEACGNATRCVVSLLGGSARIETVAG 96          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_LEIXX (Diaminopimelate epimerase OS=Leifsonia xyli subsp. xyli GN=dapF PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.461e-13
Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN------------GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 583
            LHF K  G GNDF+L  + + T P ++  Q  ++CDR+FG+GADGVI A+                  ++ M  +N+DGS  EMCGNG+R + R++ E
Sbjct:    4 LHFTKGQGTGNDFVLYADPDGTLP-LSAGQIAEICDRHFGVGADGVIRAVRSKRLPEGAEALADDEAAEWFMDYYNADGSAAEMCGNGIRVYVRYLIE 100          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ENTFA (Diaminopimelate epimerase OS=Enterococcus faecalis GN=dapF PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.461e-13
Identity = 47/103 (45.63%), Postives = 61/103 (59.22%), Query Frame = 2
Query:  338 KYHGLGNDFILVDNRNSTEPRITPEQAEKL----CDRNFGI--GADGVIFAMPGVNGTDYT-MRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            K HG  NDF L+D     E  +T E+ E+L    C R  G+  GADG++    G +GT    MR+ NSDGSE  MCGNG+R  AR++AE    N ++SFTV T
Sbjct:    7 KVHGSENDFFLLDE-TQFERSLTAEEIEQLRIQLCSRETGLLAGADGLLLVGEGTHGTSNARMRVINSDGSEASMCGNGLRTVARYLAE---KNQEKSFTVET 105          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_RHOFD (Diaminopimelate epimerase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=dapF PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.908e-13
Identity = 41/101 (40.59%), Postives = 58/101 (57.43%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDNRNSTEPR--ITPEQAEKLCDRNFGIGADGVIFAMPG-VNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            F K  G GNDF+++D    T+ R  ++      L DR+FG+GAD ++   P    G D+   I N+DG+E E CGNG RCFARF+ + + L  K +  V T
Sbjct:    5 FTKMQGAGNDFVVLDE---TQGRFGLSTAHYRLLADRHFGVGADQILTVRPSPAPGIDFEYLIHNADGAEVEQCGNGARCFARFVRD-QGLTAKDAIRVQT 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_AZOPC (Diaminopimelate epimerase OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=dapF PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.908e-13
Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQ-AEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HG GND+I +D     E    PE+ A +L DR+ GIG+DG++  MP  +   + MR+FNSDGSE +MCGN +RC  +++ +      K + T+ T
Sbjct:    1 MKFTKMHGAGNDYIYIDCFK--EKIDCPEELAIRLSDRHKGIGSDGLVLIMPS-DKCSFRMRMFNSDGSEAQMCGNAIRCVGKYVYD-NGYTRKLNITIET 97          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BACWK (Diaminopimelate epimerase OS=Bacillus weihenstephanensis (strain KBAB4) GN=dapF PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.492e-13
Identity = 46/102 (45.10%), Postives = 61/102 (59.80%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            F K HGLGN +I V   N  E +I  E     AEK+ + N GIGADG+I   P  +     MR+FN+DGSE + CGNG+RC A++  E + + GK  FT+ T
Sbjct:    6 FTKMHGLGNSYIYV---NMFEEQIREEDLAIVAEKVSNINTGIGADGMILICPS-DVAPVKMRMFNNDGSEGKSCGNGLRCVAKYAYEHKLVEGK-VFTIET 102          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BACCN (Diaminopimelate epimerase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=dapF PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.492e-13
Identity = 46/102 (45.10%), Postives = 59/102 (57.84%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDNRNSTEPRITPEQ----AEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            F K HGLGN +I V   N  E  I  E+    AEK+ +RN GIGADG+I   P        MR+FN+DGSE + CGNG+RC A++  E   L  +  FT+ T
Sbjct:    6 FTKMHGLGNSYIYV---NMFEEHIPEEELALVAEKVSNRNTGIGADGMILICPS-EVAPVKMRMFNNDGSEGKSCGNGLRCVAKYAYE-HKLVEETIFTIET 102          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_RUTMC (Diaminopimelate epimerase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=dapF PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.254e-13
Identity = 40/101 (39.60%), Postives = 58/101 (57.43%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            ++FVK HGLGNDF++VDN  + +     EQ   L +R+ GIG D ++          D+   I+N+DG E E CGNG RCFA F+++ + L+      V T
Sbjct:    3 INFVKMHGLGNDFMMVDNL-AGDITFNAEQIANLANRHLGIGFDQLLLVETSNTKNVDFRYVIYNADGLEVEQCGNGARCFAFFVSK-KGLSNNNPIVVET 101          
The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DAPF_PHOLL8.564e-1443.56Diaminopimelate epimerase OS=Photorhabdus luminesc... [more]
DAPF_HALHL1.118e-1343.68Diaminopimelate epimerase OS=Halorhodospira haloph... [more]
DAPF_SPHWW1.461e-1342.11Diaminopimelate epimerase OS=Sphingomonas wittichi... [more]
DAPF_LEIXX1.461e-1339.80Diaminopimelate epimerase OS=Leifsonia xyli subsp.... [more]
DAPF_ENTFA1.461e-1345.63Diaminopimelate epimerase OS=Enterococcus faecalis... [more]
DAPF_RHOFD1.908e-1340.59Diaminopimelate epimerase OS=Rhodoferax ferrireduc... [more]
DAPF_AZOPC1.908e-1340.59Diaminopimelate epimerase OS=Azobacteroides pseudo... [more]
DAPF_BACWK2.492e-1345.10Diaminopimelate epimerase OS=Bacillus weihenstepha... [more]
DAPF_BACCN2.492e-1345.10Diaminopimelate epimerase OS=Bacillus cereus subsp... [more]
DAPF_RUTMC3.254e-1339.60Diaminopimelate epimerase OS=Ruthia magnifica subs... [more]

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Properties
Property NameValue
Genbank descriptionC32004H07EF DevOvary1 Citrus clementina cDNA clone C32004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bp
GACTGTATCACACAAACTAAACCAACCACCGCATTTGACATTACCGCGAC
CAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATA
ACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCAC
TCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGAC
CATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCA
TCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTT
TCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCC
TCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACGGAACCTAGG
ATAACTCCGGAGCAAGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGG
GGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCACTGATTATA
CAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAAT
GGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAATTTAAATGG
GAAGCAAAGTTTCACTGTCCACACT
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