FC876448

Overview
NameFC876448
Unique NameFC876448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10903 contig Ccv1_Contig10903:92..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_HAHCH (Diaminopimelate epimerase OS=Hahella chejuensis (strain KCTC 2396) GN=dapF PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.781e-19
Identity = 50/101 (49.50%), Postives = 62/101 (61.39%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD   S      PEQ  +L DRNFG+G D ++   P G    D+  RIFN+DGSE E CGNG RCFARF+ E   L  K++  V T
Sbjct:    3 IKFTKMHGLGNDFMVVD-LISQHAHFRPEQVRRLADRNFGVGFDQLLIVEPPGRPDADFRYRIFNADGSEVEQCGNGARCFARFVKE-NRLTNKKNIRVET 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PROMT (Diaminopimelate epimerase OS=Prochlorococcus marinus (strain NATL2A) GN=dapF PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.327e-19
Identity = 46/103 (44.66%), Postives = 62/103 (60.19%), Query Frame = 2
Query:  329 HFVKYHGLGNDFILVDNRNSTEPRITPEQA----EKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            +F KY GLGNDFI+ D R++    +  +      E LC+RNFGIGADG+I  +   N     M+I+NSDGSEPEMCGNG+RC   F+ +   +N      + T
Sbjct:    4 NFSKYQGLGNDFIIFDARSNNLDHLFSKNKDNFIEHLCNRNFGIGADGIILILESNNKCFVRMKIYNSDGSEPEMCGNGIRCLIAFLNDNNEINELSEIPIET 106          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PROM1 (Diaminopimelate epimerase OS=Prochlorococcus marinus (strain NATL1A) GN=dapF PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.327e-19
Identity = 46/103 (44.66%), Postives = 62/103 (60.19%), Query Frame = 2
Query:  329 HFVKYHGLGNDFILVDNRNSTEPRITPEQA----EKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            +F KY GLGNDFI+ D R++    +  +      E LC+RNFGIGADG+I  +   N     M+I+NSDGSEPEMCGNG+RC   F+ +   +N      + T
Sbjct:    4 NFSKYQGLGNDFIIFDARSNNLDHLFSKNKDNFIEHLCNRNFGIGADGIILILESNNKCFVRMKIYNSDGSEPEMCGNGIRCLIAFLNDNNEINELSEIPIET 106          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SHELP (Diaminopimelate epimerase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=dapF PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.039e-19
Identity = 50/101 (49.50%), Postives = 64/101 (63.37%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            +HF K HGLGNDF++VD         +PEQ ++L DRNFGIG D ++   P  +   D+  RIFN+DGSE E CGNG RCFARF+ + + L  KQ   V T
Sbjct:    2 IHFTKMHGLGNDFMVVDGVTQNV-YFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFV-KSKGLINKQKIKVST 100          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_TERTT (Diaminopimelate epimerase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=dapF PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.969e-19
Identity = 50/101 (49.50%), Postives = 62/101 (61.39%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDF+++D   S +  ITPE+A KL DR+FG+G D V+    P     D+  RIFN+DGSE E CGNG RCFA F+ +   L  K    V T
Sbjct:    3 LRFTKMHGLGNDFVMID-AISQKVTITPERARKLADRHFGVGCDQVLVVESPDNPDADFRYRIFNNDGSEVENCGNGARCFAVFVRQ-RQLTAKSDIVVET 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SHESH (Diaminopimelate epimerase OS=Shewanella sediminis (strain HAW-EB3) GN=dapF PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.183e-19
Identity = 49/101 (48.51%), Postives = 62/101 (61.39%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            +HF K HGLGNDF++VD         +PEQ ++L DRNFGIG D ++   P  +   D+  RIFN+DG E E CGNG RCFARF+   + L  KQ   V T
Sbjct:    2 IHFTKMHGLGNDFMVVDGVTQNV-FFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGGEVEQCGNGARCFARFVRN-KGLTNKQKIRVST 100          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_LEPBL (Diaminopimelate epimerase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=dapF PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.183e-19
Identity = 46/93 (49.46%), Postives = 63/93 (67.74%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGK 604
            L F K  G+GND+I +D+  +   R+TPEQ +K+ +RNFGIG+DGVIF      G D+ M ++NSDGS  EMCGNG+RC A++I +    N K
Sbjct:    4 LKFTKMEGIGNDYIYIDSTQANI-RLTPEQIQKISNRNFGIGSDGVIFIRNSKQG-DFMMDMYNSDGSSSEMCGNGIRCVAKYIYDHGLTNSK 94          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_LEPBJ (Diaminopimelate epimerase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=dapF PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.183e-19
Identity = 46/93 (49.46%), Postives = 63/93 (67.74%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGK 604
            L F K  G+GND+I +D+  +   R+TPEQ +K+ +RNFGIG+DGVIF      G D+ M ++NSDGS  EMCGNG+RC A++I +    N K
Sbjct:    4 LKFTKMEGIGNDYIYIDSTQANI-RLTPEQIQKISNRNFGIGSDGVIFIRNSKQG-DFMMDMYNSDGSSSEMCGNGIRCVAKYIYDHGLTNSK 94          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_LACS1 (Diaminopimelate epimerase OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=dapF PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.183e-19
Identity = 48/105 (45.71%), Postives = 69/105 (65.71%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQ----AEKLCDRNFGI--GADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVH 622
            +  +K HG GNDF ++D  N  EP +T E+    A+K+CDR+ G+  GADGV++   G  GTD  MR+ N+DGSE  MCGNG+R  AR+++E +NL   +  T+H
Sbjct:    1 MEMLKVHGSGNDFFILDEDNLEEP-LTEEELIQLAQKVCDRDTGLHGGADGVLYVQAGHEGTDGRMRVINADGSEASMCGNGIRTVARYLSEKKNLAEFKIQTMH 104          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_HELMI (Diaminopimelate epimerase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=dapF PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.183e-19
Identity = 47/91 (51.65%), Postives = 61/91 (67.03%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQ-----AEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 583
            + FVK HGLGNDFI+V   N+ EP +   +     A ++CDR++GIG DG+I   P  +  D   RI NSDGSEPEMCGNG+RC AR++ E
Sbjct:    1 MEFVKMHGLGNDFIVV---NAMEPPLLDREDWEEIAVRICDRHYGIGGDGLILLFPS-DKADIRWRILNSDGSEPEMCGNGIRCLARYVYE 87          
The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DAPF_HAHCH1.781e-1949.50Diaminopimelate epimerase OS=Hahella chejuensis (s... [more]
DAPF_PROMT2.327e-1944.66Diaminopimelate epimerase OS=Prochlorococcus marin... [more]
DAPF_PROM12.327e-1944.66Diaminopimelate epimerase OS=Prochlorococcus marin... [more]
DAPF_SHELP3.039e-1949.50Diaminopimelate epimerase OS=Shewanella loihica (s... [more]
DAPF_TERTT3.969e-1949.50Diaminopimelate epimerase OS=Teredinibacter turner... [more]
DAPF_SHESH5.183e-1948.51Diaminopimelate epimerase OS=Shewanella sediminis ... [more]
DAPF_LEPBL5.183e-1949.46Diaminopimelate epimerase OS=Leptospira borgpeters... [more]
DAPF_LEPBJ5.183e-1949.46Diaminopimelate epimerase OS=Leptospira borgpeters... [more]
DAPF_LACS15.183e-1945.71Diaminopimelate epimerase OS=Lactobacillus salivar... [more]
DAPF_HELMI5.183e-1951.65Diaminopimelate epimerase OS=Heliobacterium modest... [more]

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Properties
Property NameValue
Genbank descriptionC32004H07EF DevOvary1 Citrus clementina cDNA clone C32004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bp
GACTGTATCACACAAACTAAACCAACCACCGCATTTGACATTACCGCGAC
CAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATA
ACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCAC
TCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGAC
CATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCA
TCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTT
TCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCC
TCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACGGAACCTAGG
ATAACTCCGGAGCAAGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGG
GGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCACTGATTATA
CAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAAT
GGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAATTTAAATGG
GAAGCAAAGTTTCACTGTCCACACT
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