FC876448
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_HAHCH (Diaminopimelate epimerase OS=Hahella chejuensis (strain KCTC 2396) GN=dapF PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.781e-19 Identity = 50/101 (49.50%), Postives = 62/101 (61.39%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 + F K HGLGNDF++VD S PEQ +L DRNFG+G D ++ P G D+ RIFN+DGSE E CGNG RCFARF+ E L K++ V T Sbjct: 3 IKFTKMHGLGNDFMVVD-LISQHAHFRPEQVRRLADRNFGVGFDQLLIVEPPGRPDADFRYRIFNADGSEVEQCGNGARCFARFVKE-NRLTNKKNIRVET 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PROMT (Diaminopimelate epimerase OS=Prochlorococcus marinus (strain NATL2A) GN=dapF PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.327e-19 Identity = 46/103 (44.66%), Postives = 62/103 (60.19%), Query Frame = 2 Query: 329 HFVKYHGLGNDFILVDNRNSTEPRITPEQA----EKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 +F KY GLGNDFI+ D R++ + + E LC+RNFGIGADG+I + N M+I+NSDGSEPEMCGNG+RC F+ + +N + T Sbjct: 4 NFSKYQGLGNDFIIFDARSNNLDHLFSKNKDNFIEHLCNRNFGIGADGIILILESNNKCFVRMKIYNSDGSEPEMCGNGIRCLIAFLNDNNEINELSEIPIET 106
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PROM1 (Diaminopimelate epimerase OS=Prochlorococcus marinus (strain NATL1A) GN=dapF PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.327e-19 Identity = 46/103 (44.66%), Postives = 62/103 (60.19%), Query Frame = 2 Query: 329 HFVKYHGLGNDFILVDNRNSTEPRITPEQA----EKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 +F KY GLGNDFI+ D R++ + + E LC+RNFGIGADG+I + N M+I+NSDGSEPEMCGNG+RC F+ + +N + T Sbjct: 4 NFSKYQGLGNDFIIFDARSNNLDHLFSKNKDNFIEHLCNRNFGIGADGIILILESNNKCFVRMKIYNSDGSEPEMCGNGIRCLIAFLNDNNEINELSEIPIET 106
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SHELP (Diaminopimelate epimerase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=dapF PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.039e-19 Identity = 50/101 (49.50%), Postives = 64/101 (63.37%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 +HF K HGLGNDF++VD +PEQ ++L DRNFGIG D ++ P + D+ RIFN+DGSE E CGNG RCFARF+ + + L KQ V T Sbjct: 2 IHFTKMHGLGNDFMVVDGVTQNV-YFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFV-KSKGLINKQKIKVST 100
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_TERTT (Diaminopimelate epimerase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=dapF PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.969e-19 Identity = 50/101 (49.50%), Postives = 62/101 (61.39%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 L F K HGLGNDF+++D S + ITPE+A KL DR+FG+G D V+ P D+ RIFN+DGSE E CGNG RCFA F+ + L K V T Sbjct: 3 LRFTKMHGLGNDFVMID-AISQKVTITPERARKLADRHFGVGCDQVLVVESPDNPDADFRYRIFNNDGSEVENCGNGARCFAVFVRQ-RQLTAKSDIVVET 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SHESH (Diaminopimelate epimerase OS=Shewanella sediminis (strain HAW-EB3) GN=dapF PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 5.183e-19 Identity = 49/101 (48.51%), Postives = 62/101 (61.39%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 +HF K HGLGNDF++VD +PEQ ++L DRNFGIG D ++ P + D+ RIFN+DG E E CGNG RCFARF+ + L KQ V T Sbjct: 2 IHFTKMHGLGNDFMVVDGVTQNV-FFSPEQIKRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGGEVEQCGNGARCFARFVRN-KGLTNKQKIRVST 100
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_LEPBL (Diaminopimelate epimerase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=dapF PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 5.183e-19 Identity = 46/93 (49.46%), Postives = 63/93 (67.74%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGK 604 L F K G+GND+I +D+ + R+TPEQ +K+ +RNFGIG+DGVIF G D+ M ++NSDGS EMCGNG+RC A++I + N K Sbjct: 4 LKFTKMEGIGNDYIYIDSTQANI-RLTPEQIQKISNRNFGIGSDGVIFIRNSKQG-DFMMDMYNSDGSSSEMCGNGIRCVAKYIYDHGLTNSK 94
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_LEPBJ (Diaminopimelate epimerase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=dapF PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 5.183e-19 Identity = 46/93 (49.46%), Postives = 63/93 (67.74%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGK 604 L F K G+GND+I +D+ + R+TPEQ +K+ +RNFGIG+DGVIF G D+ M ++NSDGS EMCGNG+RC A++I + N K Sbjct: 4 LKFTKMEGIGNDYIYIDSTQANI-RLTPEQIQKISNRNFGIGSDGVIFIRNSKQG-DFMMDMYNSDGSSSEMCGNGIRCVAKYIYDHGLTNSK 94
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_LACS1 (Diaminopimelate epimerase OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=dapF PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 5.183e-19 Identity = 48/105 (45.71%), Postives = 69/105 (65.71%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQ----AEKLCDRNFGI--GADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVH 622 + +K HG GNDF ++D N EP +T E+ A+K+CDR+ G+ GADGV++ G GTD MR+ N+DGSE MCGNG+R AR+++E +NL + T+H Sbjct: 1 MEMLKVHGSGNDFFILDEDNLEEP-LTEEELIQLAQKVCDRDTGLHGGADGVLYVQAGHEGTDGRMRVINADGSEASMCGNGIRTVARYLSEKKNLAEFKIQTMH 104
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_HELMI (Diaminopimelate epimerase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=dapF PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 5.183e-19 Identity = 47/91 (51.65%), Postives = 61/91 (67.03%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQ-----AEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 583 + FVK HGLGNDFI+V N+ EP + + A ++CDR++GIG DG+I P + D RI NSDGSEPEMCGNG+RC AR++ E Sbjct: 1 MEFVKMHGLGNDFIVV---NAMEPPLLDREDWEEIAVRICDRHYGIGGDGLILLFPS-DKADIRWRILNSDGSEPEMCGNGIRCLARYVYE 87 The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 318
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bpback to top |