FC876448

Overview
NameFC876448
Unique NameFC876448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10903 contig Ccv1_Contig10903:92..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_META3 (Diaminopimelate epimerase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=dapF PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.841e-19
Identity = 49/90 (54.44%), Postives = 60/90 (66.67%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAE---KLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAE 583
            L+F K HGLGND+I++ N    E     E+AE   K+C R F IGADGVIF  P  +   D   RIFNSDGSE EMCGNG+RCF++F+ E
Sbjct:    3 LNFTKMHGLGNDYIVI-NEFDGEKIKEDEKAEFSKKICKRGFSIGADGVIFVQPATDEKYDIRFRIFNSDGSEAEMCGNGIRCFSKFVYE 91          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SHEFN (Diaminopimelate epimerase OS=Shewanella frigidimarina (strain NCIMB 400) GN=dapF PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.508e-18
Identity = 49/101 (48.51%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            +HF K HGLGNDF++VD         +PEQ  +L DRNFGIG D ++   P  +   D+  RIFN+DGSE E CGNG RCFARF+   + L  K    V T
Sbjct:    2 IHFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFVRN-KGLTQKNKIRVST 100          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SHEAM (Diaminopimelate epimerase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=dapF PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.508e-18
Identity = 49/101 (48.51%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            +HF K HGLGNDF++VD         +PEQ  +L DRNFGIG D ++   P  +   D+  RIFN+DGSE E CGNG RCFARF+   + L  K    V T
Sbjct:    2 IHFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGSEVEQCGNGARCFARFVRN-KGLTQKHKIKVST 100          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_HALOH (Diaminopimelate epimerase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=dapF PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.970e-18
Identity = 48/101 (47.52%), Postives = 65/101 (64.36%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGT-DYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HG GNDFI+V+  N  +   + + A +LC R+F IGADG+I  +P  +   D+ MRIFN+DGSE EMCGNG+RCFA ++ E  NL  +    + T
Sbjct:    3 LSFTKMHGTGNDFIMVNGSNYPDLDFS-KLARQLCRRHFSIGADGLIIVLPPESVEHDFRMRIFNADGSEAEMCGNGIRCFAHYLRE-NNLTTRDVLKIET 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SHEWM (Diaminopimelate epimerase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=dapF PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.572e-18
Identity = 47/101 (46.53%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            +HF K HGLGNDF++VD         +PEQ ++L DRNFG+G D ++   P  +   D+  RIFN+DG E E CGNG RCFARF+   + L  K    V T
Sbjct:    2 IHFAKMHGLGNDFMVVDGVTQNV-FFSPEQIKRLADRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGGEVEQCGNGARCFARFVRN-KGLTNKHKIKVST 100          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_AZOSE (Diaminopimelate epimerase OS=Azoarcus sp. (strain EbN1) GN=dapF PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.572e-18
Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDN-RNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDF+++D  R S +  +TPEQ  +L DR+FGIG D ++          D+  RIFN+DG E E CGNG RCF RF+ E + L  K+   V T
Sbjct:    3 LRFTKMHGLGNDFVVIDAIRQSVD--LTPEQVRRLADRHFGIGCDQLLVVEEATRPDVDFRYRIFNADGGEVEQCGNGARCFVRFVHE-QGLTAKRRIRVET 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_METTH (Diaminopimelate epimerase OS=Methanobacterium thermoautotrophicum GN=dapF PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.360e-18
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 2
Query:  332 FVKYHGLGNDFILVDN--RNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFI 577
            F K HGLGND++++D   +        PE   ++C R F +GADGVIF  P     D   RIFN+DGSE EMCGNG+RCF++F+
Sbjct:    4 FSKMHGLGNDYVVIDESAQECIPEDKKPEFVREVCTRGFSVGADGVIFVQPASGEGDIRFRIFNADGSEAEMCGNGIRCFSKFV 87          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BURCM (Diaminopimelate epimerase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=dapF PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.360e-18
Identity = 45/99 (45.45%), Postives = 61/99 (61.62%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTV 619
            L F K HG GNDF+++D  +   P +T  Q   L +R+FGIGAD ++    P V+G D+  RIFN DG E E CGNG RCF +F+++   L  K+S  V
Sbjct:    3 LSFTKMHGAGNDFVVLDGYSRALPPLTEAQVRALANRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFVSD-RGLTDKRSVRV 100          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_ALCBS (Diaminopimelate epimerase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=dapF PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.360e-18
Identity = 44/104 (42.31%), Postives = 60/104 (57.69%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPR----ITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDF+++D    + P     +  ++  +L DR FG+G D ++   P     D+  RI N+DGSE   CGNG RCFARF+ E + L  K+S  V T
Sbjct:    3 LRFTKMHGLGNDFMVIDGIRQSLPETGLPLPADEIRRLADRKFGVGFDQMLIVQPAQGDADFRYRILNADGSEVSQCGNGARCFARFVRE-QGLTDKKSIRVET 105          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_NITEC (Diaminopimelate epimerase OS=Nitrosomonas eutropha (strain C91) GN=dapF PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.388e-18
Identity = 46/102 (45.10%), Postives = 62/102 (60.78%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVD--NRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDFI+++  N+ ++   + P    +L DR+FGIG D ++       G D+  RIFN+DG E E CGNG RCFARF+ +  NL  K +  V T
Sbjct:    3 LQFTKMHGLGNDFIVINAINQPASLTFLDPATIRRLADRHFGIGFDQLLIVEQAREGGDFRYRIFNADGGEVEQCGNGARCFARFVRDY-NLTDKNTIRVET 103          
The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DAPF_META38.841e-1954.44Diaminopimelate epimerase OS=Methanococcus aeolicu... [more]
DAPF_SHEFN1.508e-1848.51Diaminopimelate epimerase OS=Shewanella frigidimar... [more]
DAPF_SHEAM1.508e-1848.51Diaminopimelate epimerase OS=Shewanella amazonensi... [more]
DAPF_HALOH1.970e-1847.52Diaminopimelate epimerase OS=Halothermothrix oreni... [more]
DAPF_SHEWM2.572e-1846.53Diaminopimelate epimerase OS=Shewanella woodyi (st... [more]
DAPF_AZOSE2.572e-1847.06Diaminopimelate epimerase OS=Azoarcus sp. (strain ... [more]
DAPF_METTH3.360e-1848.81Diaminopimelate epimerase OS=Methanobacterium ther... [more]
DAPF_BURCM3.360e-1845.45Diaminopimelate epimerase OS=Burkholderia ambifari... [more]
DAPF_ALCBS3.360e-1842.31Diaminopimelate epimerase OS=Alcanivorax borkumens... [more]
DAPF_NITEC4.388e-1845.10Diaminopimelate epimerase OS=Nitrosomonas eutropha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32004H07EF DevOvary1 Citrus clementina cDNA clone C32004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bp
GACTGTATCACACAAACTAAACCAACCACCGCATTTGACATTACCGCGAC
CAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATA
ACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCAC
TCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGAC
CATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCA
TCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTT
TCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCC
TCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACGGAACCTAGG
ATAACTCCGGAGCAAGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGG
GGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCACTGATTATA
CAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAAT
GGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAATTTAAATGG
GAAGCAAAGTTTCACTGTCCACACT
back to top