FC876448

Overview
NameFC876448
Unique NameFC876448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10903 contig Ccv1_Contig10903:92..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BURTA (Diaminopimelate epimerase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=dapF PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.667e-17
Identity = 45/99 (45.45%), Postives = 58/99 (58.59%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTV 619
            L F K HG GNDF+++D  +   P +T      L DR+FGIGAD ++    P V+G D+  RIFN DG E E CGNG RCF +F+ +   L  K S  V
Sbjct:    3 LSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFVRD-HGLTDKASVRV 100          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_AZOSB (Diaminopimelate epimerase OS=Azoarcus sp. (strain BH72) GN=dapF PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.667e-17
Identity = 43/101 (42.57%), Postives = 62/101 (61.39%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF+++D    T   +TP + + + DR+FG+G D ++   P G +  D+  RIFN+DG E E CGNG RCF RF+ + + L  K+   V T
Sbjct:    3 IRFTKMHGLGNDFVVID-ATRTPVDLTPARVKAIADRHFGVGCDQLLVVEPPGSDEVDFRYRIFNADGGEVEQCGNGARCFVRFVHD-KGLTDKREIRVET 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSYWF (Diaminopimelate epimerase OS=Psychrobacter sp. (strain PRwf-1) GN=dapF PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.178e-17
Identity = 48/101 (47.52%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF+++D   +    +TPE    L DRN GIG D ++   P +    D+  RIFNSDGSE E CGNG RCFARF+ +   L+ KQ   V T
Sbjct:    3 IEFTKMHGLGNDFMVID-LVTQRLELTPELITLLADRNLGIGFDQLLVVEPPMRPDVDFRYRIFNSDGSEVEQCGNGARCFARFV-QARKLSFKQRIRVET 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_CHRVO (Diaminopimelate epimerase OS=Chromobacterium violaceum GN=dapF PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.844e-17
Identity = 47/101 (46.53%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDF+++D    T   +TPEQ   L +R  GIG D ++   P    G D+  RIFN+DG E E CGNG RCFA+F+ + + L GK    V T
Sbjct:    3 LKFSKMHGLGNDFMVIDGVRQTVS-LTPEQIRLLGNRQLGIGFDQLLLVEPAREAGHDFRYRIFNNDGGEVEQCGNGARCFAKFVRD-QGLTGKSRIEVET 101          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SHESA (Diaminopimelate epimerase OS=Shewanella sp. (strain ANA-3) GN=dapF PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.715e-17
Identity = 47/101 (46.53%), Postives = 59/101 (58.42%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD         +PEQ  +L DRNFGIG D ++   P  +   D+  RIFN+DG E E CGNG RCFARF+   + L  K    V T
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGGEVENCGNGARCFARFVRN-KGLTNKNKIRVST 100          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BURPP (Diaminopimelate epimerase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=dapF PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.715e-17
Identity = 43/88 (48.86%), Postives = 56/88 (63.64%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEP-RITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 583
            L F K HG GNDF+++D    T+P  +TP Q   L DR+FG+GAD ++    P V G D+  RIFN DG E E CGNG RCF +F+ +
Sbjct:    3 LKFTKMHGAGNDFVVLDGY--TQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDFRYRIFNCDGGEVEHCGNGARCFVKFVRD 88          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SHESR (Diaminopimelate epimerase OS=Shewanella sp. (strain MR-7) GN=dapF PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.851e-17
Identity = 46/101 (45.54%), Postives = 59/101 (58.42%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD         +PEQ  +L DRNFG+G D ++   P  +   D+  RIFN+DG E E CGNG RCFARF+   + L  K    V T
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGGEVENCGNGARCFARFVRN-KGLTNKNKIRVST 100          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SHESM (Diaminopimelate epimerase OS=Shewanella sp. (strain MR-4) GN=dapF PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.851e-17
Identity = 46/101 (45.54%), Postives = 59/101 (58.42%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD         +PEQ  +L DRNFG+G D ++   P  +   D+  RIFN+DG E E CGNG RCFARF+   + L  K    V T
Sbjct:    2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGGEVENCGNGARCFARFVRN-KGLTNKNKIRVST 100          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SHEON (Diaminopimelate epimerase OS=Shewanella oneidensis GN=dapF PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.851e-17
Identity = 46/101 (45.54%), Postives = 59/101 (58.42%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            + F K HGLGNDF++VD         +PEQ  +L DRNFG+G D ++   P  +   D+  RIFN+DG E E CGNG RCFARF+   + L  K    V T
Sbjct:    2 IQFTKMHGLGNDFMVVDGITQNV-FFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGGEVENCGNGARCFARFVRN-KGLTNKNKIRVST 100          
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSEU5 (Diaminopimelate epimerase OS=Pseudomonas stutzeri (strain A1501) GN=dapF PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.336e-17
Identity = 47/101 (46.53%), Postives = 62/101 (61.39%), Query Frame = 2
Query:  326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625
            L F K HGLGNDF+++D   S    I P+ A++  DR+ G+G D ++   P  N   D+  RIFNSDGSE E CGNG RCFARF+ + + L  K+   V T
Sbjct:    3 LRFTKMHGLGNDFMVID-LVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEPPQNPDVDFRYRIFNSDGSEVEQCGNGARCFARFVVD-KRLTVKRKIKVET 101          
The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
DAPF_BURTA1.667e-1745.45Diaminopimelate epimerase OS=Burkholderia thailand... [more]
DAPF_AZOSB1.667e-1742.57Diaminopimelate epimerase OS=Azoarcus sp. (strain ... [more]
DAPF_PSYWF2.178e-1747.52Diaminopimelate epimerase OS=Psychrobacter sp. (st... [more]
DAPF_CHRVO2.844e-1746.53Diaminopimelate epimerase OS=Chromobacterium viola... [more]
DAPF_SHESA3.715e-1746.53Diaminopimelate epimerase OS=Shewanella sp. (strai... [more]
DAPF_BURPP3.715e-1748.86Diaminopimelate epimerase OS=Burkholderia phytofir... [more]
DAPF_SHESR4.851e-1745.54Diaminopimelate epimerase OS=Shewanella sp. (strai... [more]
DAPF_SHESM4.851e-1745.54Diaminopimelate epimerase OS=Shewanella sp. (strai... [more]
DAPF_SHEON4.851e-1745.54Diaminopimelate epimerase OS=Shewanella oneidensis... [more]
DAPF_PSEU56.336e-1746.53Diaminopimelate epimerase OS=Pseudomonas stutzeri ... [more]

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Properties
Property NameValue
Genbank descriptionC32004H07EF DevOvary1 Citrus clementina cDNA clone C32004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bp
GACTGTATCACACAAACTAAACCAACCACCGCATTTGACATTACCGCGAC
CAAGAGCAGAAACAGAAAAGCCGTCAAAGCAAGCATCGAGCATGGCCATA
ACCACCACGCGCTCACTCTCCGTCACGCCCGTAACTCGCCGCTCTGCCAC
TCCAATCAATCCTCTTCGATCCTCCTCTTTATCTTATTCGTTGACTCGAC
CATTCAGTTCCAATTTGACTCTCAAAGTCCCTAGCTTCCGCGTCTCGGCA
TCTTCTATGAGCAGCATTCACGCTCCGGAGAGCGCTTCGCGAACCTCTTT
TCTTGACCGCAGAGAGAGCGGCTTCCTTCATTTCGTCAAGTACCATGGCC
TCGGCAACGACTTCATTTTGGTTGATAACAGGAATTCTACGGAACCTAGG
ATAACTCCGGAGCAAGCGGAGAAGCTGTGTGATCGGAATTTTGGCATTGG
GGCCGATGGAGTGATCTTCGCCATGCCTGGAGTCAATGGCACTGATTATA
CAATGAGAATTTTCAATTCTGATGGTAGCGAGCCAGAGATGTGTGGCAAT
GGAGTTCGATGCTTTGCCAGATTCATTGCTGAGCTTGAAAATTTAAATGG
GAAGCAAAGTTTCACTGTCCACACT
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