FC876448
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BURTA (Diaminopimelate epimerase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=dapF PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.667e-17 Identity = 45/99 (45.45%), Postives = 58/99 (58.59%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTV 619 L F K HG GNDF+++D + P +T L DR+FGIGAD ++ P V+G D+ RIFN DG E E CGNG RCF +F+ + L K S V Sbjct: 3 LSFTKMHGAGNDFVVLDGYSRALPPLTDALVRALADRHFGIGADQLLLVEKPTVDGADFKYRIFNCDGGEVEHCGNGARCFVKFVRD-HGLTDKASVRV 100
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_AZOSB (Diaminopimelate epimerase OS=Azoarcus sp. (strain BH72) GN=dapF PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.667e-17 Identity = 43/101 (42.57%), Postives = 62/101 (61.39%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMP-GVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 + F K HGLGNDF+++D T +TP + + + DR+FG+G D ++ P G + D+ RIFN+DG E E CGNG RCF RF+ + + L K+ V T Sbjct: 3 IRFTKMHGLGNDFVVID-ATRTPVDLTPARVKAIADRHFGVGCDQLLVVEPPGSDEVDFRYRIFNADGGEVEQCGNGARCFVRFVHD-KGLTDKREIRVET 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSYWF (Diaminopimelate epimerase OS=Psychrobacter sp. (strain PRwf-1) GN=dapF PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.178e-17 Identity = 48/101 (47.52%), Postives = 61/101 (60.40%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 + F K HGLGNDF+++D + +TPE L DRN GIG D ++ P + D+ RIFNSDGSE E CGNG RCFARF+ + L+ KQ V T Sbjct: 3 IEFTKMHGLGNDFMVID-LVTQRLELTPELITLLADRNLGIGFDQLLVVEPPMRPDVDFRYRIFNSDGSEVEQCGNGARCFARFV-QARKLSFKQRIRVET 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_CHRVO (Diaminopimelate epimerase OS=Chromobacterium violaceum GN=dapF PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.844e-17 Identity = 47/101 (46.53%), Postives = 60/101 (59.41%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 L F K HGLGNDF+++D T +TPEQ L +R GIG D ++ P G D+ RIFN+DG E E CGNG RCFA+F+ + + L GK V T Sbjct: 3 LKFSKMHGLGNDFMVIDGVRQTVS-LTPEQIRLLGNRQLGIGFDQLLLVEPAREAGHDFRYRIFNNDGGEVEQCGNGARCFAKFVRD-QGLTGKSRIEVET 101
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SHESA (Diaminopimelate epimerase OS=Shewanella sp. (strain ANA-3) GN=dapF PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 3.715e-17 Identity = 47/101 (46.53%), Postives = 59/101 (58.42%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 + F K HGLGNDF++VD +PEQ +L DRNFGIG D ++ P + D+ RIFN+DG E E CGNG RCFARF+ + L K V T Sbjct: 2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGIGFDQLLLVEPPYDPDLDFHYRIFNADGGEVENCGNGARCFARFVRN-KGLTNKNKIRVST 100
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_BURPP (Diaminopimelate epimerase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=dapF PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 3.715e-17 Identity = 43/88 (48.86%), Postives = 56/88 (63.64%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEP-RITPEQAEKLCDRNFGIGADGVIFA-MPGVNGTDYTMRIFNSDGSEPEMCGNGVRCFARFIAE 583 L F K HG GNDF+++D T+P +TP Q L DR+FG+GAD ++ P V G D+ RIFN DG E E CGNG RCF +F+ + Sbjct: 3 LKFTKMHGAGNDFVVLDGY--TQPVNLTPAQVRALADRHFGVGADQLLLVEKPTVAGVDFRYRIFNCDGGEVEHCGNGARCFVKFVRD 88
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SHESR (Diaminopimelate epimerase OS=Shewanella sp. (strain MR-7) GN=dapF PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 4.851e-17 Identity = 46/101 (45.54%), Postives = 59/101 (58.42%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 + F K HGLGNDF++VD +PEQ +L DRNFG+G D ++ P + D+ RIFN+DG E E CGNG RCFARF+ + L K V T Sbjct: 2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGGEVENCGNGARCFARFVRN-KGLTNKNKIRVST 100
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SHESM (Diaminopimelate epimerase OS=Shewanella sp. (strain MR-4) GN=dapF PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 4.851e-17 Identity = 46/101 (45.54%), Postives = 59/101 (58.42%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 + F K HGLGNDF++VD +PEQ +L DRNFG+G D ++ P + D+ RIFN+DG E E CGNG RCFARF+ + L K V T Sbjct: 2 IQFTKMHGLGNDFMVVDGVTQNV-FFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGGEVENCGNGARCFARFVRN-KGLTNKNKIRVST 100
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_SHEON (Diaminopimelate epimerase OS=Shewanella oneidensis GN=dapF PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 4.851e-17 Identity = 46/101 (45.54%), Postives = 59/101 (58.42%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 + F K HGLGNDF++VD +PEQ +L DRNFG+G D ++ P + D+ RIFN+DG E E CGNG RCFARF+ + L K V T Sbjct: 2 IQFTKMHGLGNDFMVVDGITQNV-FFSPEQIRRLADRNFGVGFDQLLLVEPPYDPDLDFHYRIFNADGGEVENCGNGARCFARFVRN-KGLTNKNKIRVST 100
BLAST of FC876448 vs. ExPASy Swiss-Prot
Match: DAPF_PSEU5 (Diaminopimelate epimerase OS=Pseudomonas stutzeri (strain A1501) GN=dapF PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 6.336e-17 Identity = 47/101 (46.53%), Postives = 62/101 (61.39%), Query Frame = 2 Query: 326 LHFVKYHGLGNDFILVDNRNSTEPRITPEQAEKLCDRNFGIGADGVIFAMPGVN-GTDYTMRIFNSDGSEPEMCGNGVRCFARFIAELENLNGKQSFTVHT 625 L F K HGLGNDF+++D S I P+ A++ DR+ G+G D ++ P N D+ RIFNSDGSE E CGNG RCFARF+ + + L K+ V T Sbjct: 3 LRFTKMHGLGNDFMVID-LVSQHAHIQPKHAKQWGDRHTGVGFDQLLIVEPPQNPDVDFRYRIFNSDGSEVEQCGNGARCFARFVVD-KRLTVKRKIKVET 101 The following BLAST results are available for this feature:
BLAST of FC876448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 318
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876448 ID=FC876448; Name=FC876448; organism=Citrus clementina; type=EST; length=625bpback to top |