FC876453

Overview
NameFC876453
Unique NameFC876453
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9492 contig Ccv1_Contig9492:5..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876453 vs. ExPASy Swiss-Prot
Match: PER20_ARATH (Peroxidase 20 OS=Arabidopsis thaliana GN=PER20 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.504e-31
Identity = 70/182 (38.46%), Postives = 105/182 (57.69%), Query Frame = 3
Query:  150 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFG-MRNFRYIENIKEAVERECPGVVSCADILVLSDRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRL 692
            L+  FYK++CP AE+I++  +++   +    A S LR  FHDC V  CDAS+LLD+    LSEK+   +   +R F  I+ IK  +E  CP  VSC+DIL L+ RD V   GGP+  +  GRRD  K+      Q++P  N S+  ++  F   G++   L+AL G+H++G+  CV    R+
Sbjct:   30 LLKGFYKESCPLAEEIVKHNIEVAVLKDPRMAASLLRLQFHDCFVLGCDASVLLDTHGDMLSEKQATPNLNSLRGFEVIDYIKYLLEEACPLTVSCSDILALAARDSVFLRGGPWWEVLLGRRDSLKASFAGANQFIPAPNSSLDSLIINFKQQGLNIQDLIALSGAHTIGKARCVSFKQRI 211          
BLAST of FC876453 vs. ExPASy Swiss-Prot
Match: PER43_ARATH (Peroxidase 43 OS=Arabidopsis thaliana GN=PER43 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 5.883e-31
Identity = 73/191 (38.22%), Postives = 108/191 (56.54%), Query Frame = 3
Query:  150 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSDRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPELTCTEPD 722
            L + FY +TCPQAE I++  V        N     LR  FHDC V+ CD S+L+++    +SEK      G+R F  +E +K  +E  CPGVVSC+DI+ L+ RD +    GP   + TGRRDGR S   + +  +P+ +DS+ ++  +F   G++A  LV L  +H++G T C  +  RLY  L   +PD
Sbjct:   26 LEVGFYSNTCPQAESIVKRVVSGAALSDPNLPAILLRLHFHDCFVEGCDGSILVNNG--AISEKNAFGHEGVRGFEIVEAVKAELEAACPGVVSCSDIVALAARDAISLANGPAYEVPTGRRDGRVSNMSLAKD-MPEVSDSIEILKAKFMQKGLNAKDLVLLSAAHTIGTTACFFMSKRLYDFLPGGQPD 213          
BLAST of FC876453 vs. ExPASy Swiss-Prot
Match: PER40_ARATH (Peroxidase 40 OS=Arabidopsis thaliana GN=PER40 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 5.883e-31
Identity = 71/186 (38.17%), Postives = 103/186 (55.38%), Query Frame = 3
Query:  150 LVMNF--YKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFG-MRNFRYIENIKEAVERECPGVVSCADILVLSDRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYP 698
            LV++F  Y+++CP+AE I+   V+         A S LR  FHDC V  CDAS+LLD T   + EK    +   +R F  I++IK  +E  CP  VSCADIL ++ RD VV  GGP   ++ GR+D R +  +     LP  N ++S ++  F  +G+    +VAL G H++G+  C     RL P
Sbjct:   48 LVLDFGLYRNSCPEAESIVYSWVETTVLEDPRMAASLLRLHFHDCFVNGCDASVLLDDTEGLVGEKTAPPNLNSLRGFEVIDSIKSDIESVCPETVSCADILAMAARDSVVVSGGPRWEVEVGRKDSRTASKQAATNGLPSPNSTVSTLISTFQNLGLSQTDMVALSGGHTLGKARCTSFTARLQP 233          
BLAST of FC876453 vs. ExPASy Swiss-Prot
Match: PER66_ARATH (Peroxidase 66 OS=Arabidopsis thaliana GN=PER66 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.003e-30
Identity = 71/184 (38.59%), Postives = 103/184 (55.98%), Query Frame = 3
Query:  141 DPGLVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSDRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRL 692
            +  L  ++Y  +CP AE II E V+             LR  FHDC ++ CDAS+LLDSTR   +EK+   +  +R+F  IE+ K  +E+ CP  VSCAD++ ++ RD V   GGPY  +  GR+DG  SRA      LP    ++S +++ FAA G+    +V L G H++G +HC     RL
Sbjct:   23 EAALDAHYYDQSCPAAEKIILETVRNATLYDPKVPARLLRMFFHDCFIRGCDASILLDSTRSNQAEKDGPPNISVRSFYVIEDAKRKLEKACPRTVSCADVIAIAARDVVTLSGGPYWSVLKGRKDGTISRANETRN-LPPPTFNVSQLIQSFAARGLSVKDMVTLSGGHTIGFSHCSSFESRL 205          
BLAST of FC876453 vs. ExPASy Swiss-Prot
Match: PER18_ARATH (Peroxidase 18 OS=Arabidopsis thaliana GN=PER18 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.003e-30
Identity = 72/174 (41.38%), Postives = 101/174 (58.05%), Query Frame = 3
Query:  150 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSDRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHC 671
            L  NFY  +CP AE I+R  V+       +     LR IFHDC VQ CD S+L+   R   +E+    +  +  F  IE++K  +E  CPG VSCADILVL+ RD V ALGGP +P+ TGRRDGR S A  +   + D + ++  ++  F++ G+    LV L G+H++G  HC
Sbjct:   31 LSFNFYAGSCPGAELIVRNTVRSASSSDPSVLGKLLRLIFHDCFVQGCDGSVLI---RGNGTERSDPGNASLGGFAVIESVKNILEIFCPGTVSCADILVLAARDAVEALGGPVVPIPTGRRDGRVSMAANVRPNIIDTDFTVDKMINIFSSKGLSVHDLVVLSGAHTIGAAHC 201          
BLAST of FC876453 vs. ExPASy Swiss-Prot
Match: PER30_ARATH (Peroxidase 30 OS=Arabidopsis thaliana GN=PER30 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.311e-30
Identity = 72/191 (37.70%), Postives = 106/191 (55.50%), Query Frame = 3
Query:  150 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSDRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPELTCTEPD 722
            L MNFY  +CP AE II + ++       + A   +R  FHDC V+ CD S+L++ST    +E++   +  +R F ++E IK  +E+ CP  VSCADI+ L+ RD VVA GGP   + TGRRDGR S        +P    + + +   F   G++   LV L G+H++G +HC  +  RLY   T  + D
Sbjct:   29 LQMNFYAKSCPNAEKIISDHIQNHIHNGPSLAAPLIRMHFHDCFVRGCDGSVLINSTSGN-AERDAPPNLTLRGFGFVERIKALLEKVCPKTVSCADIIALTARDAVVATGGPSWSVPTGRRDGRISNKTEATNNIPPPTSNFTTLQRLFKNQGLNLKDLVLLSGAHTIGVSHCSSMNTRLYNFSTTVKQD 218          
BLAST of FC876453 vs. ExPASy Swiss-Prot
Match: PER2_ARMRU (Peroxidase C2 OS=Armoracia rusticana GN=PRXC2 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.311e-30
Identity = 72/190 (37.89%), Postives = 105/190 (55.26%), Query Frame = 3
Query:  159 NFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKE-MDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSDRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPG-LVALLGSHSVGRTHCVKLVHRLYPELTCTEPD 722
            +FY  TCPQ  DI    +K   +     A S LR  FHDC V  CDAS+LLD+T    +EK+    +   R F  I+ +K AVE+ CP  VSCAD+L ++ +  VV  GGP   + +GRRD  +   ++    LP  + ++ V+ ++F  +G+D P  LVAL G H+ G+  C  ++ RLY      +PD
Sbjct:   29 SFYDKTCPQVFDIATNTIKTALRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNARSARGFDVIDTMKAAVEKACPKTVSCADLLAIAAQKSVVLAGGPSWKVPSGRRDSLRGFMDLANDNLPGPSSTLQVLKDKFRNVGLDRPSDLVALSGGHTFGKNQCQFIMDRLYNFSNSGKPD 218          
BLAST of FC876453 vs. ExPASy Swiss-Prot
Match: PER8_ARATH (Peroxidase 8 OS=Arabidopsis thaliana GN=PER8 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.920e-30
Identity = 69/171 (40.35%), Postives = 102/171 (59.65%), Query Frame = 3
Query:  162 FYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSDRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALL-GSHSVGRTHC 671
            FY+ TCP AE I+   V   + R++    + LR  FHDC V+ CDASLL+D T +  SEK + R+ G+R F  I+  K+ +E  CP  VSCADI+ ++ RD +   GGP   ++TGRRDG +S    ++   P    S++  ++ F +IG +   +VAL+ G H+VG  HC
Sbjct:   26 FYEGTCPPAESIVGRVVFNHWDRNRTVTAALLRMQFHDCVVKGCDASLLIDPTTERPSEKSVGRNAGVRGFEIIDEAKKELELVCPKTVSCADIVTIATRDSIALAGGPKFKVRTGRRDGLRSNPSDVKLLGP--TVSVATSIKAFKSIGFNVSTMVALIGGGHTVGVAHC 194          
BLAST of FC876453 vs. ExPASy Swiss-Prot
Match: PER1_ARATH (Peroxidase 1/2 OS=Arabidopsis thaliana GN=PER1 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.504e-30
Identity = 67/182 (36.81%), Postives = 104/182 (57.14%), Query Frame = 3
Query:  150 LVMNFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEKEMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSDRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLY 695
            L +++Y+  CP+AE+I+R        R K  A   LR  FHDC V+ CD S+LL S +   +E++   +  ++ +  ++  K A+ER+CP ++SCAD+L L  RD V  +GGP+ P+  GRRDGR S+       LP     +  + + FA  G++A  LV L G H++G + C  +  RLY
Sbjct:   26 LDLDYYRSKCPKAEEIVRGVTVQYVSRQKTLAAKLLRMHFHDCFVRGCDGSVLLKSAKND-AERDAVPNLTLKGYEVVDAAKTALERKCPNLISCADVLALVARDAVAVIGGPWWPVPLGRRDGRISKLNDALLNLPSPFADIKTLKKNFANKGLNAKDLVVLSGGHTIGISSCALVNSRLY 206          
BLAST of FC876453 vs. ExPASy Swiss-Prot
Match: PERN_ARMRU (Peroxidase N OS=Armoracia rusticana GN=HRPN PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.109e-29
Identity = 75/189 (39.68%), Postives = 103/189 (54.50%), Query Frame = 3
Query:  159 NFYKDTCPQAEDIIREQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRKTLSEK-EMDRSFGMRNFRYIENIKEAVERECPGVVSCADILVLSDRDGVVALGGPYIPLKTGRRDGRKSRAEILEQYLPDHNDSMSVVLERFAAIGIDAPGLVALLGSHSVGRTHCVKLVHRLYPELTCTEPD 722
            + Y  +CP    I+R+QVK+  K     A S +R  FHDC V  CDAS+LLD T    SEK  +     +R F  I+ IK AVE  CPGVVSCADIL L+ RD V   GGP   +  GR+DG  +        LP   + +  ++ +FAA+G++   +VAL G+H+ G+  C    +RL+       PD
Sbjct:   33 DIYAKSCPNLLQIVRDQVKIALKAEIRMAASLIRLHFHDCFVNGCDASVLLDGTN---SEKLAIPNVNSVRGFEVIDTIKAAVENACPGVVSCADILTLAARDSVYLSGGPQWRVALGRKDGLVANQSSANN-LPSPFEPLDAIIAKFAAVGLNVTDVVALSGAHTFGQAKCDLFSNRLFNFTGAGTPD 217          
The following BLAST results are available for this feature:
BLAST of FC876453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PER20_ARATH4.504e-3138.46Peroxidase 20 OS=Arabidopsis thaliana GN=PER20 PE=... [more]
PER43_ARATH5.883e-3138.22Peroxidase 43 OS=Arabidopsis thaliana GN=PER43 PE=... [more]
PER40_ARATH5.883e-3138.17Peroxidase 40 OS=Arabidopsis thaliana GN=PER40 PE=... [more]
PER66_ARATH1.003e-3038.59Peroxidase 66 OS=Arabidopsis thaliana GN=PER66 PE=... [more]
PER18_ARATH1.003e-3041.38Peroxidase 18 OS=Arabidopsis thaliana GN=PER18 PE=... [more]
PER30_ARATH1.311e-3037.70Peroxidase 30 OS=Arabidopsis thaliana GN=PER30 PE=... [more]
PER2_ARMRU1.311e-3037.89Peroxidase C2 OS=Armoracia rusticana GN=PRXC2 PE=3... [more]
PER8_ARATH2.920e-3040.35Peroxidase 8 OS=Arabidopsis thaliana GN=PER8 PE=2 ... [more]
PER1_ARATH6.504e-3036.81Peroxidase 1/2 OS=Arabidopsis thaliana GN=PER1 PE=... [more]
PERN_ARMRU1.109e-2939.68Peroxidase N OS=Armoracia rusticana GN=HRPN PE=2 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32004H12EF DevOvary1 Citrus clementina cDNA clone C32004H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876453 ID=FC876453; Name=FC876453; organism=Citrus clementina; type=EST; length=722bp
GGAGATCTAAACCAAGGTTGGTCACCTTTAGTGAGTGAAGAGTAGAAGAG
AAAATGGGTACGAAAGCTGTCTTCTTGCTTTTAGCTTTGCTTTCCTTCTC
AGCTGTGTCTCTGAGGTCTGCTTTGGCAGAAAATGAAGAGGACCCAGGTC
TTGTTATGAATTTTTACAAGGATACATGCCCTCAGGCCGAGGACATTATC
AGGGAACAAGTTAAGCTTCTGTACAAGCGCCACAAGAACACTGCATTTTC
TTGGCTTAGAAACATTTTCCATGACTGTGCTGTCCAGTCTTGTGATGCTT
CACTGCTTCTGGACTCGACAAGAAAGACCTTGTCTGAGAAGGAGATGGAC
AGGAGCTTTGGTATGAGGAACTTCAGGTACATTGAGAACATCAAAGAAGC
TGTTGAAAGAGAGTGCCCTGGTGTTGTTTCCTGTGCTGATATCCTTGTCC
TGTCCGATAGAGATGGCGTTGTTGCGCTTGGAGGCCCATACATTCCTCTC
AAGACAGGAAGAAGAGATGGTAGAAAAAGCAGAGCAGAGATACTTGAGCA
GTATCTCCCAGATCACAATGACAGCATGTCTGTTGTTCTTGAGAGGTTTG
CAGCCATTGGCATTGACGCCCCTGGACTTGTTGCTCTGCTAGGATCTCAC
AGTGTTGGCAGAACTCATTGTGTGAAGCTGGTGCACCGTCTGTACCCAGA
GTTGACCTGCACTGAACCTGAC
back to top