FC876454

Overview
NameFC876454
Unique NameFC876454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length903
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_ANTFO (50S ribosomal protein L2, chloroplastic OS=Anthoceros formosae GN=rpl2 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.840e-41
Identity = 82/134 (61.19%), Postives = 103/134 (76.87%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            M I  Y+  T  TRN +V   + +V+S P+  L + QH C KGRN RGIIT+ HRGGGHKR+YRKIDF R++KDI+GRI TIEYDPNRN +ICL +Y DGEK+YIL+P+G  IGD++VS TE PI +GNALPL+
Sbjct:    1 MVIRSYRAYTLGTRNRSVFEFEKKVRSKPQKKLTFRQH-CKKGRNNRGIITSRHRGGGHKRIYRKIDFLRDKKDIFGRIATIEYDPNRNTFICLTYYEDGEKKYILYPQGMRIGDSVVSSTEAPISIGNALPLT 133          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_MARPO (50S ribosomal protein L2, chloroplastic OS=Marchantia polymorpha GN=rpl2 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.403e-41
Identity = 86/134 (64.18%), Postives = 100/134 (74.63%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAI LY+  TP TRN +V   D  VK  P+  L Y +H   KGRN RGIIT+ HRGGGHKRLYRKIDF+RN+K I G+I TIEYDPNRN YICLI+Y DGEKRYIL+PRG  + DTI+S  E PI +GN LPL+
Sbjct:    1 MAIRLYRAYTPGTRNRSVPKFDEIVKCQPQKKLTYNKH-IKKGRNNRGIITSQHRGGGHKRLYRKIDFQRNKKYITGKIKTIEYDPNRNTYICLINYEDGEKRYILYPRGIKLDDTIISSEEAPILIGNTLPLT 133          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_HUPLU (50S ribosomal protein L2, chloroplastic OS=Huperzia lucidula GN=rpl2 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.531e-40
Identity = 84/135 (62.22%), Postives = 99/135 (73.33%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQ----VKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAI  Y+  TP  R+  V S     V+  P+  LI G   C KGRN RGIIT+ HRGGGHKRLYR+IDFRR+++ I GRIVT+EYDPNRNAYICL+HY DGEK+YILHP G  IGDTI+SG    I +GNALPL+
Sbjct:    1 MAIRFYRDYTPGARDRLVVSSSEGTVRFKPQKKLISG-FTCRKGRNNRGIITSRHRGGGHKRLYRQIDFRRSKRGISGRIVTVEYDPNRNAYICLVHYEDGEKKYILHPGGIKIGDTIISGPMATILIGNALPLT 134          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_ZYGCR (50S ribosomal protein L2, chloroplastic OS=Zygnema circumcarinatum GN=rpl2 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.729e-40
Identity = 85/134 (63.43%), Postives = 97/134 (72.39%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            M I  YK  TP TRN +V   +  V+S P   L  GQHR  KGRN RG+IT+ HRGGGHKRLYR IDF+R++  + GRIV+IEYDPNRNA ICLI Y DGEKRYILHPRG  IGD I+S T  PI  GNALPL+
Sbjct:    1 MGIRSYKAYTPGTRNRSVSQFEEIVQSKPEKQLTSGQHR-KKGRNNRGVITSRHRGGGHKRLYRHIDFKRDKYGMLGRIVSIEYDPNRNARICLISYQDGEKRYILHPRGISIGDQILSDTHAPISPGNALPLT 133          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_STAPU (50S ribosomal protein L2, chloroplastic OS=Staurastrum punctulatum GN=rpl2 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.539e-38
Identity = 81/134 (60.45%), Postives = 93/134 (69.40%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            M I  YK  TP TRN +V   +  ++  P   L YGQHR  KGRN RGIIT+ HRGGGHKRLYR+IDFRRN++ I G I TIEYDPNR A ICL  Y DGEKRYIL PRG  IGD I++  + PI  GN LPL+
Sbjct:    1 MGIRSYKAYTPGTRNRSVSQFEEIIQIKPEKKLTYGQHR-QKGRNNRGIITSRHRGGGHKRLYRQIDFRRNKQGIIGEIQTIEYDPNRKARICLTQYSDGEKRYILQPRGIRIGDQILASPDAPIVAGNTLPLT 133          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_PSINU (50S ribosomal protein L2, chloroplastic OS=Psilotum nudum GN=rpl2 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 7.234e-38
Identity = 76/136 (55.88%), Postives = 97/136 (71.32%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            MAI  Y+  TP TR+ +V   +   K  P+  L   +H   KGRN RGIIT+ HRGGGHKR+YR+IDFRRN  D  G+I TIEYDPNRN+YIC+++Y +G+KRYILHP+G  +GD I SGTE PI  GN +PL+ +
Sbjct:    1 MAIRSYRAYTPGTRHRSVSTFEEISKYKPKKRLTLNKHS-KKGRNNRGIITSRHRGGGHKRIYREIDFRRNNNDAPGKIATIEYDPNRNSYICIVNYENGDKRYILHPKGLNVGDLIFSGTEAPISNGNTIPLTKI 135          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_CHLAT (50S ribosomal protein L2, chloroplastic OS=Chlorokybus atmophyticus GN=rpl2 PE=3 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 2.749e-37
Identity = 75/136 (55.15%), Postives = 99/136 (72.79%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQV---KSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            M I LY+  TP TR  +V       +S P  +L YG+HR  +GRN RGIIT+ HRGGGHKRL R+IDFRR++  I  R+ TIEYDPNRN  I L++Y DGEKRY+LHPRG ++G+ I++G + P+++GNALPLS +
Sbjct:    1 MGIRLYRAYTPGTRFRSVSEFTDITRSKPEKSLTYGRHR-SQGRNNRGIITSRHRGGGHKRLSREIDFRRDKVGIPARVATIEYDPNRNCRIALLNYQDGEKRYVLHPRGLMVGEEIIAGPDAPLQLGNALPLSKI 135          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_GRATL (50S ribosomal protein L2, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl2 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.689e-37
Identity = 76/136 (55.88%), Postives = 97/136 (71.32%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQ---VKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            MAI LYK  TP TRN  + +        P   LI   HR  +GRN+RGIIT+ HRG GHKRLYR IDF+RN+ DI  ++V+IEYDPNRNA I L+HY DGEKRYILHPR   IG+T++SG +  +++GN+LPL+ +
Sbjct:    1 MAIRLYKAYTPGTRNRTISTFNEITNKKPEKTLIRKNHR-RQGRNSRGIITSRHRGKGHKRLYRTIDFKRNKYDIKAKVVSIEYDPNRNARIALLHYSDGEKRYILHPRSLNIGETVISGIKASLEVGNSLPLNYI 135          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_PORYE (50S ribosomal protein L2, chloroplastic OS=Porphyra yezoensis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.969e-36
Identity = 75/136 (55.15%), Postives = 97/136 (71.32%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVD--SQVKSN-PRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            MAI LY+  TP TRN  V   S++ ++ P  +LI   H C KGRN RG+IT  H+GGGHK+ YR IDF+RN  +I  ++ +IEYDPNRNA I L+HY DGEKRYILHPR   +G  ++SG   PI++GNALPLS++
Sbjct:    1 MAIRLYRAYTPGTRNRTVSTFSEITTDKPEKSLIVKHHFC-KGRNNRGVITCRHKGGGHKQQYRLIDFKRNRHNIVAKVASIEYDPNRNARIALLHYLDGEKRYILHPRSLSVGSMVLSGPTAPIEVGNALPLSSI 135          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_OLTVI (50S ribosomal protein L2, chloroplastic OS=Oltmannsiellopsis viridis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 5.184e-36
Identity = 76/136 (55.88%), Postives = 94/136 (69.12%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVD--SQVK-SNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            M I  YK +TP TRN +V   S++  S P  +L +   R  KGRN RG+IT+ HRGGGHKRLYR IDF+RN+  I  ++ TIEYDPNRNA I L+HY DGEKRYILHPRG  +G +I+S    P+  GNALPL  +
Sbjct:    1 MGIRFYKANTPGTRNRSVSDFSEITHSKPEKSLTFNVQRA-KGRNNRGVITSRHRGGGHKRLYRLIDFKRNKIGIAAKVATIEYDPNRNARIALLHYQDGEKRYILHPRGLNVGSSIISSLNAPVLTGNALPLKNI 135          
The following BLAST results are available for this feature:
BLAST of FC876454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_ANTFO1.840e-4161.1950S ribosomal protein L2, chloroplastic OS=Anthoce... [more]
RK2_MARPO2.403e-4164.1850S ribosomal protein L2, chloroplastic OS=Marchan... [more]
RK2_HUPLU4.531e-4062.2250S ribosomal protein L2, chloroplastic OS=Huperzi... [more]
RK2_ZYGCR7.729e-4063.4350S ribosomal protein L2, chloroplastic OS=Zygnema... [more]
RK2_STAPU5.539e-3860.4550S ribosomal protein L2, chloroplastic OS=Stauras... [more]
RK2_PSINU7.234e-3855.8850S ribosomal protein L2, chloroplastic OS=Psilotu... [more]
RK2_CHLAT2.749e-3755.1550S ribosomal protein L2, chloroplastic OS=Chlorok... [more]
RK2_GRATL4.689e-3755.8850S ribosomal protein L2, chloroplastic OS=Gracila... [more]
RK2_PORYE3.969e-3655.1550S ribosomal protein L2, chloroplastic OS=Porphyr... [more]
RK2_OLTVI5.184e-3655.8850S ribosomal protein L2, chloroplastic OS=Oltmann... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CA01RM1 EHR Citrus clementina cDNA clone KN0AAN2CA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876454 ID=FC876454; Name=FC876454; organism=Citrus clementina; type=EST; length=903bp
GCACGAGGAAAGAAAAGAACTTAAATCAAAATACTTAATAGCATGGCGAT
ACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACA
GTCAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGT
TGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGG
GGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAA
AAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAAT
GCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGATATATTTT
ACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAG
TTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGAACTATT
GATTTACGTAATTGGAAGTAACCAATTAGGTTTACGACGAAACCTAGAAA
TCGATCACTGATCCAATTTGAGTACCTCTACAGGATAGACCTCAACAGAA
AACTGAAGAGTAACGGCAGCAAGTGATTGAGTTCAGTAGTTCCTCATATA
AAATTATTGACTCTAGAGATATAGTAATATGGAGAAGACTAAATTGTTTC
AAGCACCGACAGAACCAGAAGCGCCCCTTGTTTCAAAGAGAGGAGGACGG
GTTATTCACATTTGATTTGATGGTCAGAGGCGAATTGAAAGCTAAGCAGT
GGTAATAGTAATTCGAAAGATTTCCCGGGGAAAAATAGAGATGTCTCCTA
CGTTACCCATAATATGTGGAAGTATCGACGTATTTTCATAGAGTCATTCG
GTCTGAATGCTACATGAAGAACATAAGCCCGATGACGGAACGGGAAGACC
TAG
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