FC876454

Overview
NameFC876454
Unique NameFC876454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length903
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_PORPU (50S ribosomal protein L2, chloroplastic OS=Porphyra purpurea GN=rpl2 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.771e-36
Identity = 76/136 (55.88%), Postives = 96/136 (70.59%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVD--SQVKSN-PRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            MAI LY+  TP TRN  V   S++ ++ P  +LI   H C KGRN RG+IT  H+GGGHK+ YR IDF+RN  +I  ++ +IEYDPNRNA I L+HY DGEKRYILHPR   +G  +VSG   PI++GNALPLS +
Sbjct:    1 MAIRLYRAYTPGTRNRTVSTFSEITTDKPEKSLINKHHFC-KGRNNRGVITCRHKGGGHKQRYRLIDFKRNRHNIIAKVASIEYDPNRNARIALLHYLDGEKRYILHPRSLSVGAIVVSGPMAPIEVGNALPLSTI 135          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_CHAVU (50S ribosomal protein L2, chloroplastic OS=Chara vulgaris GN=rpl2 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.771e-36
Identity = 77/136 (56.62%), Postives = 96/136 (70.59%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSN---PRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            M I +YK  TP TRN +V      +   P  +L  G+    KGRN +GIIT+ HRGGGHKRLYRKIDFRR +  IYG + TIEYDPNRN++ICL++Y DGEKRYIL+PRG  IGDTI+S  +  I +GN LPL+ +
Sbjct:    1 MGIRIYKAYTPGTRNRSVSDYKNISCLKPEKSLTSGK-MSKKGRNNQGIITSRHRGGGHKRLYRKIDFRRKKIGIYGIVKTIEYDPNRNSHICLVNYEDGEKRYILYPRGIKIGDTILSSMDASIFVGNTLPLTQI 135          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_ANEMR (50S ribosomal protein L2, plastid OS=Aneura mirabilis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.771e-36
Identity = 74/140 (52.86%), Postives = 96/140 (68.57%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAV---------DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            M I  Y+   P TR+G++            ++S P+  L+ G+H   +GRN RGIIT+ HRGGGH+RLYR IDFRR+++D+ G I TIEYDPNRN  ICL +YGDG+KRYIL+P G  IG+ I+SG E PI +GN  PLS
Sbjct:    1 MGIRSYQAYPPGTRDGSIVNSKEMVNSKEMIESEPQKVLVRGRH-IARGRNHRGIITSRHRGGGHRRLYRMIDFRRDKRDVSGEIKTIEYDPNRNTCICLTNYGDGKKRYILYPHGIEIGNKIISGIEAPISIGNTSPLS 139          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_PHATR (50S ribosomal protein L2, chloroplastic OS=Phaeodactylum tricornutum GN=rpl2 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.843e-36
Identity = 76/136 (55.88%), Postives = 95/136 (69.85%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            M+I LYK+ TP TRN A+   D   K+ P  +LI   HR  KGRN RGIIT  HRGGGHKR YR IDF+RN+  + G I +IEYDPNRNA I L++Y DGEKRYIL P+   +GD I+SG+  P+ +GN LPL+ +
Sbjct:    1 MSIRLYKSYTPGTRNRALSVFDELTKTTPEKSLIRKNHR-NKGRNNRGIITVRHRGGGHKRRYRLIDFKRNKYGVEGVIASIEYDPNRNARIALVNYTDGEKRYILQPKNLTVGDRILSGSGSPLNIGNTLPLNEI 135          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_ODOSI (50S ribosomal protein L2, chloroplastic OS=Odontella sinensis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.508e-35
Identity = 76/136 (55.88%), Postives = 92/136 (67.65%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQV---KSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            M+I LYK+ TP TRN A+ S     K+ P  +LI   HR  KGRN RG+IT  HRGGGHKR YR IDF R + ++ G +  IEYDPNRNA I L+HY DGEKRYILHP    +GD +VSG E  + +GNALPL  +
Sbjct:    1 MSIRLYKSYTPGTRNRALSSFTEITKTKPEKSLIQKNHR-SKGRNNRGVITIRHRGGGHKRRYRIIDFGRKKHNVEGVVAAIEYDPNRNARIALLHYTDGEKRYILHPNNLNVGDRVVSGMEAELVIGNALPLEKI 135          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_OSTTA (50S ribosomal protein L2, chloroplastic OS=Ostreococcus tauri GN=rpl2 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.732e-35
Identity = 75/136 (55.15%), Postives = 91/136 (66.91%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            MA+  YK  TP TRN +V       K+ P  +L    HR  KGRN RG+IT  HRGGGHKRLYR+IDFRRN+ D+   + TIEYDPNRNA I L+ Y DGEKRYILHP G  IGD+I++       +GN+LPL A+
Sbjct:    1 MALRFYKAYTPGTRNRSVADCSGLTKTRPEKSLTRSMHRA-KGRNNRGVITCRHRGGGHKRLYRQIDFRRNKYDMAATVKTIEYDPNRNARIALVEYQDGEKRYILHPNGLEIGDSIIASETAVNAVGNSLPLMAM 135          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_SYNP2 (50S ribosomal protein L2 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplB PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.277e-34
Identity = 75/133 (56.39%), Postives = 93/133 (69.92%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVD--SQV-KSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432
            M I  ++  TP TR   V   S++ KS P  +L   +HR  KGRN RG+IT  HRGGGHKRLYR IDFRR+++DI  ++  IEYDPNRNA I L+ Y DGEKRYIL P G  +GDTI++G E P ++GNALPL
Sbjct:    1 MGIRSFRPYTPGTRQATVSDFSEITKSKPEKSLTKYKHR-KKGRNNRGVITCRHRGGGHKRLYRLIDFRRDKRDITAQVTAIEYDPNRNARIALVQYEDGEKRYILQPAGLGVGDTIIAGEEAPYEIGNALPL 132          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_SYNS3 (50S ribosomal protein L2 OS=Synechococcus sp. (strain CC9311) GN=rplB PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.668e-34
Identity = 74/136 (54.41%), Postives = 94/136 (69.12%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVD--SQVKSN-PRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            MAI  ++  TP TR   V   S+V    P  +L+  +HR  KGRN RG+IT  HRGGGHKR YR +DFRRN+  +  ++  I YDP+RNA + L+ Y DGEKRYIL P G  IG T+VSGTEVPI++GNA+PLSA+
Sbjct:    1 MAIRTFRPYTPGTRTRVVTDFSEVTGRKPERSLVVSKHR-RKGRNNRGVITCRHRGGGHKRQYRLVDFRRNKHGVTAKVAAIHYDPHRNARLALLFYADGEKRYILAPAGISIGQTVVSGTEVPIEIGNAMPLSAI 135          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_SPIMX (50S ribosomal protein L2, chloroplastic OS=Spirogyra maxima GN=rpl2 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.668e-34
Identity = 76/136 (55.88%), Postives = 93/136 (68.38%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQV---KSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            M I  Y+  TP TRN +V       KS P   L     +  +GRN RG+IT+ HRGGGHKRLYR IDFRR+++ + G I+TIEYDPNRNA ICL  Y DGEKRYILH RG +IG+ I+SG + PI  GNALPL+ +
Sbjct:    1 MGIRSYRAYTPGTRNRSVSEFTEINKSRPEKRLTSKVSK-HQGRNNRGVITSRHRGGGHKRLYRDIDFRRDKQGVNGTILTIEYDPNRNARICLTSYEDGEKRYILHSRGVMIGNQILSGPDAPIVPGNALPLTNI 135          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_LEPTE (50S ribosomal protein L2, chloroplastic OS=Leptosira terrestris GN=rpl2 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.668e-34
Identity = 75/136 (55.15%), Postives = 92/136 (67.65%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            M I  YK  TP TRN ++   D   ++ P  +L     R  KGRN RGIIT+ HRGGGHKRLYR IDF+RN+  I G++ TIEYDPNRNA I  +HY DGEKRYIL+PRG  +G TI+S    PI +GN+LPL  +
Sbjct:    1 MGIRFYKPYTPGTRNRSMAEFDQITETKPEKHLTSWIPR-SKGRNNRGIITSRHRGGGHKRLYRNIDFKRNKLGILGQVATIEYDPNRNARIAKVHYQDGEKRYILYPRGLQLGQTILSNFNAPITIGNSLPLHQI 135          
The following BLAST results are available for this feature:
BLAST of FC876454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_PORPU6.771e-3655.8850S ribosomal protein L2, chloroplastic OS=Porphyr... [more]
RK2_CHAVU6.771e-3656.6250S ribosomal protein L2, chloroplastic OS=Chara v... [more]
RK2_ANEMR6.771e-3652.8650S ribosomal protein L2, plastid OS=Aneura mirabi... [more]
RK2_PHATR8.843e-3655.8850S ribosomal protein L2, chloroplastic OS=Phaeoda... [more]
RK2_ODOSI1.508e-3555.8850S ribosomal protein L2, chloroplastic OS=Odontel... [more]
RK2_OSTTA5.732e-3555.1550S ribosomal protein L2, chloroplastic OS=Ostreoc... [more]
RL2_SYNP21.277e-3456.3950S ribosomal protein L2 OS=Synechococcus sp. (str... [more]
RL2_SYNS31.668e-3454.4150S ribosomal protein L2 OS=Synechococcus sp. (str... [more]
RK2_SPIMX1.668e-3455.8850S ribosomal protein L2, chloroplastic OS=Spirogy... [more]
RK2_LEPTE1.668e-3455.1550S ribosomal protein L2, chloroplastic OS=Leptosi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN2CA01RM1 EHR Citrus clementina cDNA clone KN0AAN2CA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876454 ID=FC876454; Name=FC876454; organism=Citrus clementina; type=EST; length=903bp
GCACGAGGAAAGAAAAGAACTTAAATCAAAATACTTAATAGCATGGCGAT
ACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACA
GTCAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGT
TGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGG
GGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAA
AAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAAT
GCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGATATATTTT
ACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAG
TTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGAACTATT
GATTTACGTAATTGGAAGTAACCAATTAGGTTTACGACGAAACCTAGAAA
TCGATCACTGATCCAATTTGAGTACCTCTACAGGATAGACCTCAACAGAA
AACTGAAGAGTAACGGCAGCAAGTGATTGAGTTCAGTAGTTCCTCATATA
AAATTATTGACTCTAGAGATATAGTAATATGGAGAAGACTAAATTGTTTC
AAGCACCGACAGAACCAGAAGCGCCCCTTGTTTCAAAGAGAGGAGGACGG
GTTATTCACATTTGATTTGATGGTCAGAGGCGAATTGAAAGCTAAGCAGT
GGTAATAGTAATTCGAAAGATTTCCCGGGGAAAAATAGAGATGTCTCCTA
CGTTACCCATAATATGTGGAAGTATCGACGTATTTTCATAGAGTCATTCG
GTCTGAATGCTACATGAAGAACATAAGCCCGATGACGGAACGGGAAGACC
TAG
back to top