FC876454
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_PORPU (50S ribosomal protein L2, chloroplastic OS=Porphyra purpurea GN=rpl2 PE=3 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 6.771e-36 Identity = 76/136 (55.88%), Postives = 96/136 (70.59%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVD--SQVKSN-PRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441 MAI LY+ TP TRN V S++ ++ P +LI H C KGRN RG+IT H+GGGHK+ YR IDF+RN +I ++ +IEYDPNRNA I L+HY DGEKRYILHPR +G +VSG PI++GNALPLS + Sbjct: 1 MAIRLYRAYTPGTRNRTVSTFSEITTDKPEKSLINKHHFC-KGRNNRGVITCRHKGGGHKQRYRLIDFKRNRHNIIAKVASIEYDPNRNARIALLHYLDGEKRYILHPRSLSVGAIVVSGPMAPIEVGNALPLSTI 135
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_CHAVU (50S ribosomal protein L2, chloroplastic OS=Chara vulgaris GN=rpl2 PE=3 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 6.771e-36 Identity = 77/136 (56.62%), Postives = 96/136 (70.59%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQVKSN---PRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441 M I +YK TP TRN +V + P +L G+ KGRN +GIIT+ HRGGGHKRLYRKIDFRR + IYG + TIEYDPNRN++ICL++Y DGEKRYIL+PRG IGDTI+S + I +GN LPL+ + Sbjct: 1 MGIRIYKAYTPGTRNRSVSDYKNISCLKPEKSLTSGK-MSKKGRNNQGIITSRHRGGGHKRLYRKIDFRRKKIGIYGIVKTIEYDPNRNSHICLVNYEDGEKRYILYPRGIKIGDTILSSMDASIFVGNTLPLTQI 135
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_ANEMR (50S ribosomal protein L2, plastid OS=Aneura mirabilis GN=rpl2 PE=3 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 6.771e-36 Identity = 74/140 (52.86%), Postives = 96/140 (68.57%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAV---------DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435 M I Y+ P TR+G++ ++S P+ L+ G+H +GRN RGIIT+ HRGGGH+RLYR IDFRR+++D+ G I TIEYDPNRN ICL +YGDG+KRYIL+P G IG+ I+SG E PI +GN PLS Sbjct: 1 MGIRSYQAYPPGTRDGSIVNSKEMVNSKEMIESEPQKVLVRGRH-IARGRNHRGIITSRHRGGGHRRLYRMIDFRRDKRDVSGEIKTIEYDPNRNTCICLTNYGDGKKRYILYPHGIEIGNKIISGIEAPISIGNTSPLS 139
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_PHATR (50S ribosomal protein L2, chloroplastic OS=Phaeodactylum tricornutum GN=rpl2 PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 8.843e-36 Identity = 76/136 (55.88%), Postives = 95/136 (69.85%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441 M+I LYK+ TP TRN A+ D K+ P +LI HR KGRN RGIIT HRGGGHKR YR IDF+RN+ + G I +IEYDPNRNA I L++Y DGEKRYIL P+ +GD I+SG+ P+ +GN LPL+ + Sbjct: 1 MSIRLYKSYTPGTRNRALSVFDELTKTTPEKSLIRKNHR-NKGRNNRGIITVRHRGGGHKRRYRLIDFKRNKYGVEGVIASIEYDPNRNARIALVNYTDGEKRYILQPKNLTVGDRILSGSGSPLNIGNTLPLNEI 135
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_ODOSI (50S ribosomal protein L2, chloroplastic OS=Odontella sinensis GN=rpl2 PE=3 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 1.508e-35 Identity = 76/136 (55.88%), Postives = 92/136 (67.65%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQV---KSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441 M+I LYK+ TP TRN A+ S K+ P +LI HR KGRN RG+IT HRGGGHKR YR IDF R + ++ G + IEYDPNRNA I L+HY DGEKRYILHP +GD +VSG E + +GNALPL + Sbjct: 1 MSIRLYKSYTPGTRNRALSSFTEITKTKPEKSLIQKNHR-SKGRNNRGVITIRHRGGGHKRRYRIIDFGRKKHNVEGVVAAIEYDPNRNARIALLHYTDGEKRYILHPNNLNVGDRVVSGMEAELVIGNALPLEKI 135
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_OSTTA (50S ribosomal protein L2, chloroplastic OS=Ostreococcus tauri GN=rpl2 PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 5.732e-35 Identity = 75/136 (55.15%), Postives = 91/136 (66.91%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441 MA+ YK TP TRN +V K+ P +L HR KGRN RG+IT HRGGGHKRLYR+IDFRRN+ D+ + TIEYDPNRNA I L+ Y DGEKRYILHP G IGD+I++ +GN+LPL A+ Sbjct: 1 MALRFYKAYTPGTRNRSVADCSGLTKTRPEKSLTRSMHRA-KGRNNRGVITCRHRGGGHKRLYRQIDFRRNKYDMAATVKTIEYDPNRNARIALVEYQDGEKRYILHPNGLEIGDSIIASETAVNAVGNSLPLMAM 135
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_SYNP2 (50S ribosomal protein L2 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplB PE=3 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 1.277e-34 Identity = 75/133 (56.39%), Postives = 93/133 (69.92%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVD--SQV-KSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432 M I ++ TP TR V S++ KS P +L +HR KGRN RG+IT HRGGGHKRLYR IDFRR+++DI ++ IEYDPNRNA I L+ Y DGEKRYIL P G +GDTI++G E P ++GNALPL Sbjct: 1 MGIRSFRPYTPGTRQATVSDFSEITKSKPEKSLTKYKHR-KKGRNNRGVITCRHRGGGHKRLYRLIDFRRDKRDITAQVTAIEYDPNRNARIALVQYEDGEKRYILQPAGLGVGDTIIAGEEAPYEIGNALPL 132
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_SYNS3 (50S ribosomal protein L2 OS=Synechococcus sp. (strain CC9311) GN=rplB PE=3 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 1.668e-34 Identity = 74/136 (54.41%), Postives = 94/136 (69.12%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVD--SQVKSN-PRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441 MAI ++ TP TR V S+V P +L+ +HR KGRN RG+IT HRGGGHKR YR +DFRRN+ + ++ I YDP+RNA + L+ Y DGEKRYIL P G IG T+VSGTEVPI++GNA+PLSA+ Sbjct: 1 MAIRTFRPYTPGTRTRVVTDFSEVTGRKPERSLVVSKHR-RKGRNNRGVITCRHRGGGHKRQYRLVDFRRNKHGVTAKVAAIHYDPHRNARLALLFYADGEKRYILAPAGISIGQTVVSGTEVPIEIGNAMPLSAI 135
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_SPIMX (50S ribosomal protein L2, chloroplastic OS=Spirogyra maxima GN=rpl2 PE=3 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 1.668e-34 Identity = 76/136 (55.88%), Postives = 93/136 (68.38%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQV---KSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441 M I Y+ TP TRN +V KS P L + +GRN RG+IT+ HRGGGHKRLYR IDFRR+++ + G I+TIEYDPNRNA ICL Y DGEKRYILH RG +IG+ I+SG + PI GNALPL+ + Sbjct: 1 MGIRSYRAYTPGTRNRSVSEFTEINKSRPEKRLTSKVSK-HQGRNNRGVITSRHRGGGHKRLYRDIDFRRDKQGVNGTILTIEYDPNRNARICLTSYEDGEKRYILHSRGVMIGNQILSGPDAPIVPGNALPLTNI 135
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_LEPTE (50S ribosomal protein L2, chloroplastic OS=Leptosira terrestris GN=rpl2 PE=3 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 1.668e-34 Identity = 75/136 (55.15%), Postives = 92/136 (67.65%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441 M I YK TP TRN ++ D ++ P +L R KGRN RGIIT+ HRGGGHKRLYR IDF+RN+ I G++ TIEYDPNRNA I +HY DGEKRYIL+PRG +G TI+S PI +GN+LPL + Sbjct: 1 MGIRFYKPYTPGTRNRSMAEFDQITETKPEKHLTSWIPR-SKGRNNRGIITSRHRGGGHKRLYRNIDFKRNKLGILGQVATIEYDPNRNARIAKVHYQDGEKRYILYPRGLQLGQTILSNFNAPITIGNSLPLHQI 135 The following BLAST results are available for this feature:
BLAST of FC876454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876454 ID=FC876454; Name=FC876454; organism=Citrus clementina; type=EST; length=903bpback to top |