FC876454
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_SYNSC (50S ribosomal protein L2 OS=Synechococcus sp. (strain CC9605) GN=rplB PE=3 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 7.007e-33 Identity = 71/136 (52.21%), Postives = 92/136 (67.65%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVD--SQVKSN-PRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441 MAI ++ TP TR V S++ S P L+ +HR KGRN RG+IT HRGGGHKRLYR +DFRRN+ + ++ I YDP+RNA + L+ Y DGEKRYIL P G +G T+VSG + PI+ GNA+PLS+V Sbjct: 1 MAIRNFRPYTPGTRTRVVTDFSEITSRKPERTLVVAKHR-RKGRNNRGVITCRHRGGGHKRLYRVVDFRRNKHGVPAKVAAIHYDPHRNARLALLFYADGEKRYILAPAGVQVGQTVVSGPDAPIENGNAMPLSSV 135
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_NEPOL (50S ribosomal protein L2, chloroplastic OS=Nephroselmis olivacea GN=rpl2 PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 9.151e-33 Identity = 70/133 (52.63%), Postives = 87/133 (65.41%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQ---VKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432 M I Y+ TP TRN +V S P +L + HR +GRN G IT RGGGHKRLYR+IDFRR++ + R+ T+EYDPNR+A I L+HY DG KRYILHP+G IG ++S E PI +GNALPL Sbjct: 1 MGIRFYRAHTPGTRNRSVSDFHEITTSTPTKSLTHANHRA-RGRNHSGSITTRWRGGGHKRLYRQIDFRRDKVGVLARVATVEYDPNRSARIALLHYQDGSKRYILHPQGLAIGAEVMSSPEAPISIGNALPL 132
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_CHLRE (50S ribosomal protein L2, chloroplastic OS=Chlamydomonas reinhardtii GN=rpl2 PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 9.151e-33 Identity = 74/135 (54.81%), Postives = 87/135 (64.44%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVD-----SQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432 M I + TP TRN +V + S P L HR KGRN RGIIT HRGGGHKRLYR+IDFRR++ + ++V IEYDPNRNA I L+ Y DGEKRYI+HPRG IGD I S PI +GN+LPL Sbjct: 1 MGIRFLQAYTPGTRNRSVSDFSELTDKNSTPEKALTVSLHRA-KGRNNRGIITCRHRGGGHKRLYRQIDFRRDKIGVTAKVVRIEYDPNRNARIALLRYEDGEKRYIIHPRGLNIGDIIQSDLNAPILIGNSLPL 134
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_SYNJB (50S ribosomal protein L2 OS=Synechococcus sp. GN=rplB PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 1.195e-32 Identity = 71/142 (50.00%), Postives = 94/142 (66.20%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAV---------DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441 M I + TPSTR+ V ++ + P +L+ HR KGRN RG+IT HRGGGHKRLYR IDFRR+++ I G + T+EYDPNR+A+ICL+ Y DGEKRYIL PR +G TI++G E P ++GNA+PL + Sbjct: 1 MGIRTLRPYTPSTRHMTVSDFEELSRDENGKRPRPEKSLLQFIHR-KKGRNNRGVITCRHRGGGHKRLYRIIDFRRDKRGIPGTVKTVEYDPNRSAHICLVEYEDGEKRYILAPRNLQVGSTIMAGPEAPFEIGNAMPLERI 141
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_PROMT (50S ribosomal protein L2 OS=Prochlorococcus marinus (strain NATL2A) GN=rplB PE=3 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 2.662e-32 Identity = 70/136 (51.47%), Postives = 93/136 (68.38%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVD--SQVKSN-PRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441 MAI +K TP TR+ V S+V S+ P +L+ +HR KGRN RG+IT HRGGGHKRLYR +DFRRN+ + ++ I YDP+RNA + L+ Y DGEKRYIL P +G ++SG + PI+ GNALPLS++ Sbjct: 1 MAIRSFKPYTPGTRSRVVTDFSEVTSSKPERSLVVSKHR-KKGRNNRGVITCRHRGGGHKRLYRIVDFRRNKHGVSAKVAAIHYDPHRNARLALLFYSDGEKRYILAPADITVGQEVISGPDAPIETGNALPLSSM 135
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_PROMM (50S ribosomal protein L2 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplB PE=3 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 2.662e-32 Identity = 70/136 (51.47%), Postives = 89/136 (65.44%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441 MAI ++ TP TR V + P +L+ +HR KGRN RG+IT HRGGGHKRLYR +DFRRN+ I ++ I YDP+R A++ L+ Y DGEKRYIL P G IG ++SG E PI+ GNALPLSA+ Sbjct: 1 MAIRTFRPYTPGTRTRVVTDFNEVTGRKPERSLVVAKHR-RKGRNNRGVITCRHRGGGHKRLYRIVDFRRNKHGIPAKVAAIHYDPHRKAHLALLFYTDGEKRYILAPAGIAIGQQLISGPESPIETGNALPLSAI 135
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_PROM1 (50S ribosomal protein L2 OS=Prochlorococcus marinus (strain NATL1A) GN=rplB PE=3 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 2.662e-32 Identity = 70/136 (51.47%), Postives = 93/136 (68.38%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVD--SQVKSN-PRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441 MAI +K TP TR+ V S+V S+ P +L+ +HR KGRN RG+IT HRGGGHKRLYR +DFRRN+ + ++ I YDP+RNA + L+ Y DGEKRYIL P +G ++SG + PI+ GNALPLS++ Sbjct: 1 MAIRSFKPYTPGTRSRVVTDFSEVTSSKPERSLVVSKHR-KKGRNNRGVITCRHRGGGHKRLYRIVDFRRNKHGVSAKVAAIHYDPHRNARLALLFYSDGEKRYILAPADITVGQEVISGPDAPIETGNALPLSSM 135
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_ACAM1 (50S ribosomal protein L2 OS=Acaryochloris marina (strain MBIC 11017) GN=rplB PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 3.477e-32 Identity = 70/136 (51.47%), Postives = 88/136 (64.71%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQV---KSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441 M I Y+ T TR + P +L+ +HR KGRN RG+IT+ RGGGHKR YR IDF RN+ + G I T+EYDPNRNA I L++Y DGEKRYILHPR +G TIV+G + PI++GNALPL + Sbjct: 1 MGIRYYRPYTAGTRQKTSSDFAEITRDRPEKSLVKAKHRA-KGRNNRGVITSRRRGGGHKRRYRIIDFYRNKLGVPGTIATVEYDPNRNARIALVNYKDGEKRYILHPRNVQVGTTIVAGPDAPIEVGNALPLERI 135
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_PROMP (50S ribosomal protein L2 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplB PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 4.541e-32 Identity = 70/136 (51.47%), Postives = 93/136 (68.38%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVD--SQVK-SNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441 MAI +K TP TR V S++ S P +LI +HR KGRN RG+IT HRGGGHKR YR +DFRR++K+I ++ I YDP+RNA + L+ Y DGEKRYI+ P G +G ++SG VPI+ GNA+PLS++ Sbjct: 1 MAIRKFKPYTPGTRQRVVTDFSEITGSKPERSLIVSKHR-NKGRNNRGVITCRHRGGGHKRQYRLVDFRRDKKNINAKVAAIHYDPHRNARLALLFYEDGEKRYIIAPAGIKVGQNVISGEGVPIEEGNAMPLSSM 135
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_PROMA (50S ribosomal protein L2 OS=Prochlorococcus marinus GN=rplB PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 5.931e-32 Identity = 68/136 (50.00%), Postives = 90/136 (66.18%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441 MAI ++ TP TR V + P +L+ +HR KGRN RG+IT HRGGGHKR YR +DFRRN+ + ++ I YDP+RNA + L+ Y DGEKRYIL P G IG ++SG +VPI++GNALPLS++ Sbjct: 1 MAIRTFRPYTPGTRTRVVTDFNEVTGRKPERSLVIAKHRL-KGRNNRGVITCRHRGGGHKRQYRLVDFRRNKHGVPAKVAAIHYDPHRNARLALLFYKDGEKRYILAPAGISIGQEVLSGKDVPIEIGNALPLSSI 135 The following BLAST results are available for this feature:
BLAST of FC876454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876454 ID=FC876454; Name=FC876454; organism=Citrus clementina; type=EST; length=903bpback to top |