FC876454

Overview
NameFC876454
Unique NameFC876454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length903
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_SYNSC (50S ribosomal protein L2 OS=Synechococcus sp. (strain CC9605) GN=rplB PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.007e-33
Identity = 71/136 (52.21%), Postives = 92/136 (67.65%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVD--SQVKSN-PRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            MAI  ++  TP TR   V   S++ S  P   L+  +HR  KGRN RG+IT  HRGGGHKRLYR +DFRRN+  +  ++  I YDP+RNA + L+ Y DGEKRYIL P G  +G T+VSG + PI+ GNA+PLS+V
Sbjct:    1 MAIRNFRPYTPGTRTRVVTDFSEITSRKPERTLVVAKHR-RKGRNNRGVITCRHRGGGHKRLYRVVDFRRNKHGVPAKVAAIHYDPHRNARLALLFYADGEKRYILAPAGVQVGQTVVSGPDAPIENGNAMPLSSV 135          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_NEPOL (50S ribosomal protein L2, chloroplastic OS=Nephroselmis olivacea GN=rpl2 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.151e-33
Identity = 70/133 (52.63%), Postives = 87/133 (65.41%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQ---VKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432
            M I  Y+  TP TRN +V        S P  +L +  HR  +GRN  G IT   RGGGHKRLYR+IDFRR++  +  R+ T+EYDPNR+A I L+HY DG KRYILHP+G  IG  ++S  E PI +GNALPL
Sbjct:    1 MGIRFYRAHTPGTRNRSVSDFHEITTSTPTKSLTHANHRA-RGRNHSGSITTRWRGGGHKRLYRQIDFRRDKVGVLARVATVEYDPNRSARIALLHYQDGSKRYILHPQGLAIGAEVMSSPEAPISIGNALPL 132          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_CHLRE (50S ribosomal protein L2, chloroplastic OS=Chlamydomonas reinhardtii GN=rpl2 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 9.151e-33
Identity = 74/135 (54.81%), Postives = 87/135 (64.44%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVD-----SQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432
            M I   +  TP TRN +V      +   S P   L    HR  KGRN RGIIT  HRGGGHKRLYR+IDFRR++  +  ++V IEYDPNRNA I L+ Y DGEKRYI+HPRG  IGD I S    PI +GN+LPL
Sbjct:    1 MGIRFLQAYTPGTRNRSVSDFSELTDKNSTPEKALTVSLHRA-KGRNNRGIITCRHRGGGHKRLYRQIDFRRDKIGVTAKVVRIEYDPNRNARIALLRYEDGEKRYIIHPRGLNIGDIIQSDLNAPILIGNSLPL 134          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_SYNJB (50S ribosomal protein L2 OS=Synechococcus sp. GN=rplB PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.195e-32
Identity = 71/142 (50.00%), Postives = 94/142 (66.20%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAV---------DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            M I   +  TPSTR+  V         ++  +  P  +L+   HR  KGRN RG+IT  HRGGGHKRLYR IDFRR+++ I G + T+EYDPNR+A+ICL+ Y DGEKRYIL PR   +G TI++G E P ++GNA+PL  +
Sbjct:    1 MGIRTLRPYTPSTRHMTVSDFEELSRDENGKRPRPEKSLLQFIHR-KKGRNNRGVITCRHRGGGHKRLYRIIDFRRDKRGIPGTVKTVEYDPNRSAHICLVEYEDGEKRYILAPRNLQVGSTIMAGPEAPFEIGNAMPLERI 141          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_PROMT (50S ribosomal protein L2 OS=Prochlorococcus marinus (strain NATL2A) GN=rplB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.662e-32
Identity = 70/136 (51.47%), Postives = 93/136 (68.38%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVD--SQVKSN-PRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            MAI  +K  TP TR+  V   S+V S+ P  +L+  +HR  KGRN RG+IT  HRGGGHKRLYR +DFRRN+  +  ++  I YDP+RNA + L+ Y DGEKRYIL P    +G  ++SG + PI+ GNALPLS++
Sbjct:    1 MAIRSFKPYTPGTRSRVVTDFSEVTSSKPERSLVVSKHR-KKGRNNRGVITCRHRGGGHKRLYRIVDFRRNKHGVSAKVAAIHYDPHRNARLALLFYSDGEKRYILAPADITVGQEVISGPDAPIETGNALPLSSM 135          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_PROMM (50S ribosomal protein L2 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.662e-32
Identity = 70/136 (51.47%), Postives = 89/136 (65.44%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            MAI  ++  TP TR   V   +      P  +L+  +HR  KGRN RG+IT  HRGGGHKRLYR +DFRRN+  I  ++  I YDP+R A++ L+ Y DGEKRYIL P G  IG  ++SG E PI+ GNALPLSA+
Sbjct:    1 MAIRTFRPYTPGTRTRVVTDFNEVTGRKPERSLVVAKHR-RKGRNNRGVITCRHRGGGHKRLYRIVDFRRNKHGIPAKVAAIHYDPHRKAHLALLFYTDGEKRYILAPAGIAIGQQLISGPESPIETGNALPLSAI 135          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_PROM1 (50S ribosomal protein L2 OS=Prochlorococcus marinus (strain NATL1A) GN=rplB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.662e-32
Identity = 70/136 (51.47%), Postives = 93/136 (68.38%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVD--SQVKSN-PRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            MAI  +K  TP TR+  V   S+V S+ P  +L+  +HR  KGRN RG+IT  HRGGGHKRLYR +DFRRN+  +  ++  I YDP+RNA + L+ Y DGEKRYIL P    +G  ++SG + PI+ GNALPLS++
Sbjct:    1 MAIRSFKPYTPGTRSRVVTDFSEVTSSKPERSLVVSKHR-KKGRNNRGVITCRHRGGGHKRLYRIVDFRRNKHGVSAKVAAIHYDPHRNARLALLFYSDGEKRYILAPADITVGQEVISGPDAPIETGNALPLSSM 135          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_ACAM1 (50S ribosomal protein L2 OS=Acaryochloris marina (strain MBIC 11017) GN=rplB PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.477e-32
Identity = 70/136 (51.47%), Postives = 88/136 (64.71%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQV---KSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            M I  Y+  T  TR           +  P  +L+  +HR  KGRN RG+IT+  RGGGHKR YR IDF RN+  + G I T+EYDPNRNA I L++Y DGEKRYILHPR   +G TIV+G + PI++GNALPL  +
Sbjct:    1 MGIRYYRPYTAGTRQKTSSDFAEITRDRPEKSLVKAKHRA-KGRNNRGVITSRRRGGGHKRRYRIIDFYRNKLGVPGTIATVEYDPNRNARIALVNYKDGEKRYILHPRNVQVGTTIVAGPDAPIEVGNALPLERI 135          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_PROMP (50S ribosomal protein L2 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplB PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.541e-32
Identity = 70/136 (51.47%), Postives = 93/136 (68.38%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVD--SQVK-SNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            MAI  +K  TP TR   V   S++  S P  +LI  +HR  KGRN RG+IT  HRGGGHKR YR +DFRR++K+I  ++  I YDP+RNA + L+ Y DGEKRYI+ P G  +G  ++SG  VPI+ GNA+PLS++
Sbjct:    1 MAIRKFKPYTPGTRQRVVTDFSEITGSKPERSLIVSKHR-NKGRNNRGVITCRHRGGGHKRQYRLVDFRRDKKNINAKVAAIHYDPHRNARLALLFYEDGEKRYIIAPAGIKVGQNVISGEGVPIEEGNAMPLSSM 135          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_PROMA (50S ribosomal protein L2 OS=Prochlorococcus marinus GN=rplB PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.931e-32
Identity = 68/136 (50.00%), Postives = 90/136 (66.18%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            MAI  ++  TP TR   V   +      P  +L+  +HR  KGRN RG+IT  HRGGGHKR YR +DFRRN+  +  ++  I YDP+RNA + L+ Y DGEKRYIL P G  IG  ++SG +VPI++GNALPLS++
Sbjct:    1 MAIRTFRPYTPGTRTRVVTDFNEVTGRKPERSLVIAKHRL-KGRNNRGVITCRHRGGGHKRQYRLVDFRRNKHGVPAKVAAIHYDPHRNARLALLFYKDGEKRYILAPAGISIGQEVLSGKDVPIEIGNALPLSSI 135          
The following BLAST results are available for this feature:
BLAST of FC876454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_SYNSC7.007e-3352.2150S ribosomal protein L2 OS=Synechococcus sp. (str... [more]
RK2_NEPOL9.151e-3352.6350S ribosomal protein L2, chloroplastic OS=Nephros... [more]
RK2_CHLRE9.151e-3354.8150S ribosomal protein L2, chloroplastic OS=Chlamyd... [more]
RL2_SYNJB1.195e-3250.0050S ribosomal protein L2 OS=Synechococcus sp. GN=r... [more]
RL2_PROMT2.662e-3251.4750S ribosomal protein L2 OS=Prochlorococcus marinu... [more]
RL2_PROMM2.662e-3251.4750S ribosomal protein L2 OS=Prochlorococcus marinu... [more]
RL2_PROM12.662e-3251.4750S ribosomal protein L2 OS=Prochlorococcus marinu... [more]
RL2_ACAM13.477e-3251.4750S ribosomal protein L2 OS=Acaryochloris marina (... [more]
RL2_PROMP4.541e-3251.4750S ribosomal protein L2 OS=Prochlorococcus marinu... [more]
RL2_PROMA5.931e-3250.0050S ribosomal protein L2 OS=Prochlorococcus marinu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CA01RM1 EHR Citrus clementina cDNA clone KN0AAN2CA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876454 ID=FC876454; Name=FC876454; organism=Citrus clementina; type=EST; length=903bp
GCACGAGGAAAGAAAAGAACTTAAATCAAAATACTTAATAGCATGGCGAT
ACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACA
GTCAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGT
TGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGG
GGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAA
AAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAAT
GCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGATATATTTT
ACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAG
TTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGAACTATT
GATTTACGTAATTGGAAGTAACCAATTAGGTTTACGACGAAACCTAGAAA
TCGATCACTGATCCAATTTGAGTACCTCTACAGGATAGACCTCAACAGAA
AACTGAAGAGTAACGGCAGCAAGTGATTGAGTTCAGTAGTTCCTCATATA
AAATTATTGACTCTAGAGATATAGTAATATGGAGAAGACTAAATTGTTTC
AAGCACCGACAGAACCAGAAGCGCCCCTTGTTTCAAAGAGAGGAGGACGG
GTTATTCACATTTGATTTGATGGTCAGAGGCGAATTGAAAGCTAAGCAGT
GGTAATAGTAATTCGAAAGATTTCCCGGGGAAAAATAGAGATGTCTCCTA
CGTTACCCATAATATGTGGAAGTATCGACGTATTTTCATAGAGTCATTCG
GTCTGAATGCTACATGAAGAACATAAGCCCGATGACGGAACGGGAAGACC
TAG
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