FC876454

Overview
NameFC876454
Unique NameFC876454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length903
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_MOOTA (50S ribosomal protein L2 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplB PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.251e-30
Identity = 69/136 (50.74%), Postives = 90/136 (66.18%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVK---SNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            MAI  +K ++P  R   V +  +   + P   L+    + G GRN +G +T  HRGGGHKRLYR IDF+R++  I GR+ TIEYDPNR+A I LI+Y DGEKRYIL P    +GD ++SG E  IK+GNALPLS +
Sbjct:    1 MAIKKFKPTSPGRRQMTVSTFAEITATEPYKPLVEPLKKTG-GRNNQGRLTVRHRGGGHKRLYRVIDFKRDKDGIPGRVATIEYDPNRSANIALINYADGEKRYILAPENLQVGDQVISGPEADIKVGNALPLSQI 135          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_THEEB (50S ribosomal protein L2 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.470e-30
Identity = 68/137 (49.64%), Postives = 87/137 (63.50%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVK---SNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEK-DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            M I +Y+  TP  R   V    +     P  +L  G  R  KGRN RG+IT+  RGGGHKR YR +DFRR+ K +I  ++ T+EYDPNRNA I L+HY DGEKRYILHPR    G  I++  + PI++GNALPL  +
Sbjct:    1 MGIRVYRPYTPGVRQKTVSDFAEITTDKPEKSLTRGFKR-DKGRNNRGVITSRRRGGGHKRRYRIVDFRRSSKLNIPAKVATVEYDPNRNARIALLHYRDGEKRYILHPRDLTPGTEIIASPDAPIEVGNALPLGKI 136          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_AYWBP (50S ribosomal protein L2 OS=Aster yellows witches'-broom phytoplasma (strain AYWB) GN=rplB PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.470e-30
Identity = 69/132 (52.27%), Postives = 86/132 (65.15%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVD--SQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432
            MAI  YK +T   RN +V   S++ +      +   H+   GRN +G IT  HRGGG KR YR IDF+RN+ +I G++ TIEYDPNR+A I LIHY DGEKRYIL P+G  +G  IVSG E  IK+ N LPL
Sbjct:    1 MAIKKYKPTTNGCRNMSVSAFSEITTQTPERSLLVSHKDQAGRNNQGKITVRHRGGGVKRKYRLIDFKRNKDNIVGKVATIEYDPNRSANIALIHYVDGEKRYILAPKGLTVGMQIVSGKETDIKVANCLPL 132          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_RHOE4 (50S ribosomal protein L2 OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=rplB PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.237e-29
Identity = 71/139 (51.08%), Postives = 86/139 (61.87%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQV---KSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKD-IYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV*T 447
            MAI  YK +TP  R  +V       +S P  +L+   H  G GRNA G IT  H+GGGHKR YR IDFRRN+KD I  ++  IEYDPNR A I L+HY DGEKRYI+ P+G + G  + SG    IK GN LPL  + T
Sbjct:    1 MAIRKYKPTTPGRRGSSVSDFAEITRSTPEKSLVRPLHGRG-GRNAHGRITTRHKGGGHKRAYRLIDFRRNDKDGIPAKVAHIEYDPNRTANIALLHYADGEKRYIIAPKGLVQGSPVESGAGADIKPGNNLPLRNIPT 138          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_ONYPE (50S ribosomal protein L2 OS=Onion yellows phytoplasma GN=rplB PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.237e-29
Identity = 69/132 (52.27%), Postives = 86/132 (65.15%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVD--SQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432
            MAI  YK +T   RN +V   S++ +      +   H+   GRN +G IT  HRGGG KR YR IDF+RN+ +I G++ TIEYDPNR+A I LIHY DGEKRYIL P+G  +G  IVSG E  IK+ N LPL
Sbjct:    1 MAIKKYKPTTNGCRNMSVSAFSEITTQTPEKRLLVSHKDQAGRNNQGKITVRHRGGGVKRKYRLIDFKRNKDNIVGKVATIEYDPNRSANIALIHYLDGEKRYILAPKGLTVGMQIVSGKEADIKVANCLPL 132          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_MYCCT (50S ribosomal protein L2 OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=rplB PE=3 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 1.237e-29
Identity = 67/138 (48.55%), Postives = 91/138 (65.94%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRN-GAVDSQV----KSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            MAI  YK++T   RN   +D       K+ P  +L+  +     GRN RG+IT  H+GGGHK+ YR IDF+RN++DI+G I TIEYDPNRNA+ICL++Y DGEKRYIL  +G  +G  +V+     IK+GN+ PL  +
Sbjct:    1 MAIKKYKSTTNGRRNMTTIDYSAVLTTKNTPEKSLVVSKSSKA-GRNNRGLITTRHKGGGHKQKYRIIDFKRNKRDIFGTISTIEYDPNRNAFICLVNYVDGEKRYILFAKGMQVGMKVVASENADIKVGNSAPLKNI 137          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_MESFL (50S ribosomal protein L2 OS=Mesoplasma florum GN=rplB PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.237e-29
Identity = 68/137 (49.64%), Postives = 91/137 (66.42%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRN-GAVDSQVK---SNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            MAI  YK +T   RN  ++D +     S P  +L+  ++    GRN RG+IT  H+GGGHK+ YR IDF+RN++D+ G I TIEYDPNRNA+ICL++Y DGEKRYIL  +G  +G  IV+     IK+GNA PL  +
Sbjct:    1 MAIKKYKPTTNGRRNMTSIDYKATLTTSTPEKSLLAAKNSKA-GRNNRGLITTRHKGGGHKQKYRIIDFKRNKRDVVGTIATIEYDPNRNAFICLVNYLDGEKRYILFAKGMTVGMKIVASEHADIKVGNAAPLKNI 136          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_CORK4 (50S ribosomal protein L2 OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=rplB PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.615e-29
Identity = 70/139 (50.36%), Postives = 86/139 (61.87%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKD-IYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV*T 447
            MAI  YK +TP  R  +V   D   +S P  +L+   H+ G GRN  G IT  H+GGGHKR YR IDFRRN+KD +  ++  IEYDPNR A I L+HY DGEKRYI+ PR    G  + SG    IK+GN LPL  + T
Sbjct:    1 MAIRKYKPTTPGRRQSSVSGFDELTRSTPEKSLLRPLHKTG-GRNVHGHITTRHKGGGHKRQYRLIDFRRNDKDGVPAKVAHIEYDPNRTANIALLHYFDGEKRYIIAPRNLKQGTVVESGANADIKVGNNLPLRNIPT 138          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_THEPX (50S ribosomal protein L2 OS=Thermoanaerobacter sp. (strain X514) GN=rplB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.110e-29
Identity = 69/133 (51.88%), Postives = 84/133 (63.16%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432
            M I  +K ++P  R   V   +   K  P  +L+    + G GRN  G IT  HRGGGHKR YR IDF+R++  I G++  IEYDPNR AYI LIHY DGEKRYI+ P G  +GD I SG  V IK+GNALPL
Sbjct:    1 MGIKSFKPTSPGRRQMTVLTFEEVTKDKPEKSLVVTLTKTG-GRNVYGRITVRHRGGGHKRKYRIIDFKRDKDGIPGKVAAIEYDPNRTAYIALIHYLDGEKRYIIAPYGLKVGDIIESGENVDIKVGNALPL 132          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_THEP3 (50S ribosomal protein L2 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rplB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.110e-29
Identity = 69/133 (51.88%), Postives = 84/133 (63.16%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432
            M I  +K ++P  R   V   +   K  P  +L+    + G GRN  G IT  HRGGGHKR YR IDF+R++  I G++  IEYDPNR AYI LIHY DGEKRYI+ P G  +GD I SG  V IK+GNALPL
Sbjct:    1 MGIKSFKPTSPGRRQMTVLTFEEVTKDKPEKSLVVTLTKTG-GRNVYGRITVRHRGGGHKRKYRIIDFKRDKDGIPGKVAAIEYDPNRTAYIALIHYLDGEKRYIIAPYGLKVGDIIESGENVDIKVGNALPL 132          
The following BLAST results are available for this feature:
BLAST of FC876454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_MOOTA4.251e-3050.7450S ribosomal protein L2 OS=Moorella thermoacetica... [more]
RL2_THEEB9.470e-3049.6450S ribosomal protein L2 OS=Thermosynechococcus el... [more]
RL2_AYWBP9.470e-3052.2750S ribosomal protein L2 OS=Aster yellows witches'... [more]
RL2_RHOE41.237e-2951.0850S ribosomal protein L2 OS=Rhodococcus erythropol... [more]
RL2_ONYPE1.237e-2952.2750S ribosomal protein L2 OS=Onion yellows phytopla... [more]
RL2_MYCCT1.237e-2948.5550S ribosomal protein L2 OS=Mycoplasma capricolum ... [more]
RL2_MESFL1.237e-2949.6450S ribosomal protein L2 OS=Mesoplasma florum GN=r... [more]
RL2_CORK41.615e-2950.3650S ribosomal protein L2 OS=Corynebacterium kroppe... [more]
RL2_THEPX2.110e-2951.8850S ribosomal protein L2 OS=Thermoanaerobacter sp.... [more]
RL2_THEP32.110e-2951.8850S ribosomal protein L2 OS=Thermoanaerobacter pse... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CA01RM1 EHR Citrus clementina cDNA clone KN0AAN2CA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876454 ID=FC876454; Name=FC876454; organism=Citrus clementina; type=EST; length=903bp
GCACGAGGAAAGAAAAGAACTTAAATCAAAATACTTAATAGCATGGCGAT
ACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACA
GTCAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGT
TGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGG
GGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAA
AAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAAT
GCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGATATATTTT
ACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAG
TTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGAACTATT
GATTTACGTAATTGGAAGTAACCAATTAGGTTTACGACGAAACCTAGAAA
TCGATCACTGATCCAATTTGAGTACCTCTACAGGATAGACCTCAACAGAA
AACTGAAGAGTAACGGCAGCAAGTGATTGAGTTCAGTAGTTCCTCATATA
AAATTATTGACTCTAGAGATATAGTAATATGGAGAAGACTAAATTGTTTC
AAGCACCGACAGAACCAGAAGCGCCCCTTGTTTCAAAGAGAGGAGGACGG
GTTATTCACATTTGATTTGATGGTCAGAGGCGAATTGAAAGCTAAGCAGT
GGTAATAGTAATTCGAAAGATTTCCCGGGGAAAAATAGAGATGTCTCCTA
CGTTACCCATAATATGTGGAAGTATCGACGTATTTTCATAGAGTCATTCG
GTCTGAATGCTACATGAAGAACATAAGCCCGATGACGGAACGGGAAGACC
TAG
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