FC876454

Overview
NameFC876454
Unique NameFC876454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length903
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_MYCTU (50S ribosomal protein L2 OS=Mycobacterium tuberculosis GN=rplB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.110e-29
Identity = 70/134 (52.24%), Postives = 83/134 (61.94%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQV---KSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKD-IYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432
            MAI  YK +TP  R  +V       +S P  +L+   H  G GRNA G IT  H+GGGHKR YR IDFRRN+KD +  ++  IEYDPNR A I L+HY DGEKRYI+ P G   GD + SG    IK GN LPL
Sbjct:    1 MAIRKYKPTTPGRRGASVSDFAEITRSTPEKSLVRPLHGRG-GRNAHGRITTRHKGGGHKRAYRMIDFRRNDKDGVNAKVAHIEYDPNRTARIALLHYLDGEKRYIIAPNGLSQGDVVESGANADIKPGNNLPL 133          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_MYCTA (50S ribosomal protein L2 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=rplB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.110e-29
Identity = 70/134 (52.24%), Postives = 83/134 (61.94%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQV---KSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKD-IYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432
            MAI  YK +TP  R  +V       +S P  +L+   H  G GRNA G IT  H+GGGHKR YR IDFRRN+KD +  ++  IEYDPNR A I L+HY DGEKRYI+ P G   GD + SG    IK GN LPL
Sbjct:    1 MAIRKYKPTTPGRRGASVSDFAEITRSTPEKSLVRPLHGRG-GRNAHGRITTRHKGGGHKRAYRMIDFRRNDKDGVNAKVAHIEYDPNRTARIALLHYLDGEKRYIIAPNGLSQGDVVESGANADIKPGNNLPL 133          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_MYCBT (50S ribosomal protein L2 OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=rplB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.110e-29
Identity = 70/134 (52.24%), Postives = 83/134 (61.94%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQV---KSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKD-IYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432
            MAI  YK +TP  R  +V       +S P  +L+   H  G GRNA G IT  H+GGGHKR YR IDFRRN+KD +  ++  IEYDPNR A I L+HY DGEKRYI+ P G   GD + SG    IK GN LPL
Sbjct:    1 MAIRKYKPTTPGRRGASVSDFAEITRSTPEKSLVRPLHGRG-GRNAHGRITTRHKGGGHKRAYRMIDFRRNDKDGVNAKVAHIEYDPNRTARIALLHYLDGEKRYIIAPNGLSQGDVVESGANADIKPGNNLPL 133          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_MYCBP (50S ribosomal protein L2 OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=rplB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.110e-29
Identity = 70/134 (52.24%), Postives = 83/134 (61.94%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQV---KSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKD-IYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432
            MAI  YK +TP  R  +V       +S P  +L+   H  G GRNA G IT  H+GGGHKR YR IDFRRN+KD +  ++  IEYDPNR A I L+HY DGEKRYI+ P G   GD + SG    IK GN LPL
Sbjct:    1 MAIRKYKPTTPGRRGASVSDFAEITRSTPEKSLVRPLHGRG-GRNAHGRITTRHKGGGHKRAYRMIDFRRNDKDGVNAKVAHIEYDPNRTARIALLHYLDGEKRYIIAPNGLSQGDVVESGANADIKPGNNLPL 133          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_MYCBO (50S ribosomal protein L2 OS=Mycobacterium bovis GN=rplB PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 2.110e-29
Identity = 70/134 (52.24%), Postives = 83/134 (61.94%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQV---KSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKD-IYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432
            MAI  YK +TP  R  +V       +S P  +L+   H  G GRNA G IT  H+GGGHKR YR IDFRRN+KD +  ++  IEYDPNR A I L+HY DGEKRYI+ P G   GD + SG    IK GN LPL
Sbjct:    1 MAIRKYKPTTPGRRGASVSDFAEITRSTPEKSLVRPLHGRG-GRNAHGRITTRHKGGGHKRAYRMIDFRRNDKDGVNAKVAHIEYDPNRTARIALLHYLDGEKRYIIAPNGLSQGDVVESGANADIKPGNNLPL 133          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_ELUMP (50S ribosomal protein L2 OS=Elusimicrobium minutum (strain Pei191) GN=rplB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.110e-29
Identity = 66/136 (48.53%), Postives = 87/136 (63.97%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVD--SQVKSN-PRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            M I  ++  TPS R   V   S++ +  P   L+ G  + G GRN  G+I   H GGGHKR YR+IDF+R +  +  ++ TIEYDPNRNA ICL+HY DG+KRYI+HP G  IGD ++SG    IK+GN LPL  +
Sbjct:    1 MPIKTFRPYTPSRRTITVADFSEITTKTPEKRLVKGLRKTG-GRNNTGMIMVRHIGGGHKRAYRQIDFKREKYGVPAKVATIEYDPNRNARICLLHYADGDKRYIIHPVGLKIGDEVMSGPNAEIKVGNCLPLKNI 135          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_PELTS (50S ribosomal protein L2 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rplB PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.755e-29
Identity = 66/136 (48.53%), Postives = 89/136 (65.44%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            MAI  +K ++P  R   V   +   ++ P  +L+    + G GRNA+G IT  HRGGGHKRLYR IDF+R++  I  ++ +IEYDPNR+A I L+HY DGEKRYI+ P G  +G T+VSG +  IK GN LPL  +
Sbjct:    1 MAIKKFKPTSPGRRFVTVSDFEEITRTEPEKSLVEPLKKSG-GRNAQGRITVRHRGGGHKRLYRIIDFKRDKDGIPAKVASIEYDPNRSARIALLHYADGEKRYIIAPAGLEVGQTVVSGPDADIKAGNCLPLKNI 135          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_MYCMM (50S ribosomal protein L2 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=rplB PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.755e-29
Identity = 70/134 (52.24%), Postives = 83/134 (61.94%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQV---KSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKD-IYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432
            MAI  YK +TP  R  +V       +S P  +L+   H  G GRNA G IT  H+GGGHKR YR IDFRRN+KD +  ++  IEYDPNR A I L+HY DGEKRYI+ P G   GD + SG    IK GN LPL
Sbjct:    1 MAIRKYKPTTPGRRGASVSDFAEITRSTPEKSLVRPLHGHG-GRNAHGRITTRHKGGGHKRAYRVIDFRRNDKDGVNAKVAHIEYDPNRTARIALLHYLDGEKRYIIAPNGLSQGDVVESGANADIKPGNNLPL 133          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_GLOVI (50S ribosomal protein L2 OS=Gloeobacter violaceus GN=rplB PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.755e-29
Identity = 70/133 (52.63%), Postives = 90/133 (67.67%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTR--NGAVDSQV-KSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432
            M I  Y+  TP TR  +GA  ++V KS P   L    HR  +GRN +G+IT+  RGGGHKRLYR IDF+R+++ I   ++ IEYDPNRNA I L+ Y DGEKRYILHP G  +G  I +G + PI++G ALPL
Sbjct:    1 MGIRKYRPMTPGTRQRSGADFAEVTKSKPEKKLTKYVHR-KQGRNNQGVITSRFRGGGHKRLYRFIDFKRDKRGIPAEVLAIEYDPNRNARIALVQYTDGEKRYILHPVGLKVGARISAGEDAPIELGCALPL 132          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_RHOOB (50S ribosomal protein L2 OS=Rhodococcus opacus (strain B4) GN=rplB PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 6.138e-29
Identity = 70/139 (50.36%), Postives = 85/139 (61.15%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQV---KSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKD-IYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV*T 447
            MAI  YK +TP  R  +V       +S P  +L+   H  G GRNA G IT  H+GGGHKR YR IDFRRN+KD +  ++  IEYDPNR A I L+HY DGEKRYI+ P+G   G  + SG    IK GN LPL  + T
Sbjct:    1 MAIRKYKPTTPGRRGSSVSDFAEITRSTPEKSLVRPLHGRG-GRNAHGRITTRHKGGGHKRAYRLIDFRRNDKDGVPAKVAHIEYDPNRTARIALLHYADGEKRYIIAPKGLFQGAPVESGAGADIKPGNNLPLRNIPT 138          
The following BLAST results are available for this feature:
BLAST of FC876454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_MYCTU2.110e-2952.2450S ribosomal protein L2 OS=Mycobacterium tubercul... [more]
RL2_MYCTA2.110e-2952.2450S ribosomal protein L2 OS=Mycobacterium tubercul... [more]
RL2_MYCBT2.110e-2952.2450S ribosomal protein L2 OS=Mycobacterium bovis (s... [more]
RL2_MYCBP2.110e-2952.2450S ribosomal protein L2 OS=Mycobacterium bovis (s... [more]
RL2_MYCBO2.110e-2952.2450S ribosomal protein L2 OS=Mycobacterium bovis GN... [more]
RL2_ELUMP2.110e-2948.5350S ribosomal protein L2 OS=Elusimicrobium minutum... [more]
RL2_PELTS2.755e-2948.5350S ribosomal protein L2 OS=Pelotomaculum thermopr... [more]
RL2_MYCMM2.755e-2952.2450S ribosomal protein L2 OS=Mycobacterium marinum ... [more]
RL2_GLOVI2.755e-2952.6350S ribosomal protein L2 OS=Gloeobacter violaceus ... [more]
RL2_RHOOB6.138e-2950.3650S ribosomal protein L2 OS=Rhodococcus opacus (st... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CA01RM1 EHR Citrus clementina cDNA clone KN0AAN2CA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876454 ID=FC876454; Name=FC876454; organism=Citrus clementina; type=EST; length=903bp
GCACGAGGAAAGAAAAGAACTTAAATCAAAATACTTAATAGCATGGCGAT
ACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACA
GTCAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGT
TGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGG
GGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAA
AAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAAT
GCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGATATATTTT
ACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAG
TTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGAACTATT
GATTTACGTAATTGGAAGTAACCAATTAGGTTTACGACGAAACCTAGAAA
TCGATCACTGATCCAATTTGAGTACCTCTACAGGATAGACCTCAACAGAA
AACTGAAGAGTAACGGCAGCAAGTGATTGAGTTCAGTAGTTCCTCATATA
AAATTATTGACTCTAGAGATATAGTAATATGGAGAAGACTAAATTGTTTC
AAGCACCGACAGAACCAGAAGCGCCCCTTGTTTCAAAGAGAGGAGGACGG
GTTATTCACATTTGATTTGATGGTCAGAGGCGAATTGAAAGCTAAGCAGT
GGTAATAGTAATTCGAAAGATTTCCCGGGGAAAAATAGAGATGTCTCCTA
CGTTACCCATAATATGTGGAAGTATCGACGTATTTTCATAGAGTCATTCG
GTCTGAATGCTACATGAAGAACATAAGCCCGATGACGGAACGGGAAGACC
TAG
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