FC876454

Overview
NameFC876454
Unique NameFC876454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length903
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10362 contig Ccv1_Contig10362:1..903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2A_ATRBE (50S ribosomal protein L2-A, chloroplastic OS=Atropa belladonna GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 2.463e-70
Identity = 127/131 (96.95%), Postives = 128/131 (97.71%), Query Frame = 1 
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTSTPSTRNG VDSQVKSNPRNNLIYGQ RCGKGRNARGIITA HRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct:    1 MAIHLYKTSTPSTRNGTVDSQVKSNPRNNLIYGQRRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131
[Close]
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_GOSBA (50S ribosomal protein L2, chloroplastic OS=Gossypium barbadense GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 4.202e-70
Identity = 126/131 (96.18%), Postives = 127/131 (96.95%), Query Frame = 1 
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTSTP TRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITA HRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYIC IHYGDGEKRYILHPRGAIIGD IVSGTEVPIKMGNALPL+
Sbjct:    1 MAIHLYKTSTPGTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICFIHYGDGEKRYILHPRGAIIGDIIVSGTEVPIKMGNALPLT 131
[Close]
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_SINAL (50S ribosomal protein L2, chloroplastic OS=Sinapis alba GN=rpl2 PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 5.488e-70
Identity = 126/131 (96.18%), Postives = 127/131 (96.95%), Query Frame = 1 
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQH CGKGRNARGIIT  HRGGGHKRLYRKIDFRRN KDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct:    1 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHHCGKGRNARGIITVRHRGGGHKRLYRKIDFRRNTKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131
[Close]
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_MORIN (50S ribosomal protein L2, chloroplastic OS=Morus indica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 5.488e-70
Identity = 125/131 (95.42%), Postives = 128/131 (97.71%), Query Frame = 1 
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTSTPSTR GAVD QVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYG+IVTIEYDPNRNAYICLIHYG GEKRYILHPRGA+IGDTIVSGTEVPIKMGNALPL+
Sbjct:    1 MAIHLYKTSTPSTRKGAVDRQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGKIVTIEYDPNRNAYICLIHYGGGEKRYILHPRGALIGDTIVSGTEVPIKMGNALPLT 131
[Close]
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_BARVE (50S ribosomal protein L2, chloroplastic OS=Barbarea verna GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 5.488e-70
Identity = 126/131 (96.18%), Postives = 127/131 (96.95%), Query Frame = 1 
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQH CGKGRNARGIIT  HRGGGHKRLYRKIDFRRN KDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct:    1 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHHCGKGRNARGIITVRHRGGGHKRLYRKIDFRRNAKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131
[Close]
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_ARAHI (50S ribosomal protein L2, chloroplastic OS=Arabis hirsuta GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 5.488e-70
Identity = 126/131 (96.18%), Postives = 127/131 (96.95%), Query Frame = 1 
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQH CGKGRNARGIIT  HRGGGHKRLYRKIDFRRN KDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct:    1 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHHCGKGRNARGIITVRHRGGGHKRLYRKIDFRRNAKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131
[Close]
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_HELAN (50S ribosomal protein L2, chloroplastic OS=Helianthus annuus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 7.167e-70
Identity = 126/131 (96.18%), Postives = 128/131 (97.71%), Query Frame = 1 
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAI+LYKTSTPSTRNG VDSQVKSNPRNNLIYGQH CGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHY DGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct:    1 MAINLYKTSTPSTRNGTVDSQVKSNPRNNLIYGQHHCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYRDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131
[Close]
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_PHAVU (50S ribosomal protein L2, chloroplastic OS=Phaseolus vulgaris GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.223e-69
Identity = 125/131 (95.42%), Postives = 130/131 (99.24%), Query Frame = 1 
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTSTPSTRNGAVDSQVKSNPRN+LIYGQHRCGKGRNARGIITAGHRGGGHKRLYR+IDFRRNEK+IYGRIVTIEYDPNRNA ICLIHYGDGEK+YILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct:    1 MAIHLYKTSTPSTRNGAVDSQVKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRQIDFRRNEKNIYGRIVTIEYDPNRNASICLIHYGDGEKKYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131
[Close]
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_PHAAO (50S ribosomal protein L2, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=rpl2-A PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.223e-69
Identity = 126/131 (96.18%), Postives = 128/131 (97.71%), Query Frame = 1 
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTST STRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEK+I GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI MGNALPL+
Sbjct:    1 MAIHLYKTSTSSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKEISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLT 131
[Close]
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_EUCGG (50S ribosomal protein L2, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.597e-69
Identity = 126/131 (96.18%), Postives = 128/131 (97.71%), Query Frame = 1 
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTSTPSTRNGAVDSQVKSN RNNLIYGQHRC KGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIV+IEYDPNRNA ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct:    1 MAIHLYKTSTPSTRNGAVDSQVKSNTRNNLIYGQHRCSKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVSIEYDPNRNASICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131
The following BLAST results are available for this feature:
BLAST of FC876454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2A_ATRBE2.463e-7096.9550S ribosomal protein L2-A, chloroplastic OS=Atrop... [more]
RK2_GOSBA4.202e-7096.1850S ribosomal protein L2, chloroplastic OS=Gossypi... [more]
RK2_SINAL5.488e-7096.1850S ribosomal protein L2, chloroplastic OS=Sinapis... [more]
RK2_MORIN5.488e-7095.4250S ribosomal protein L2, chloroplastic OS=Morus i... [more]
RK2_BARVE5.488e-7096.1850S ribosomal protein L2, chloroplastic OS=Barbare... [more]
RK2_ARAHI5.488e-7096.1850S ribosomal protein L2, chloroplastic OS=Arabis ... [more]
RK2_HELAN7.167e-7096.1850S ribosomal protein L2, chloroplastic OS=Heliant... [more]
RK2_PHAVU1.223e-6995.4250S ribosomal protein L2, chloroplastic OS=Phaseol... [more]
RK2_PHAAO1.223e-6996.1850S ribosomal protein L2, chloroplastic OS=Phalaen... [more]
RK2_EUCGG1.597e-6996.1850S ribosomal protein L2, chloroplastic OS=Eucalyp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CA01RM1 EHR Citrus clementina cDNA clone KN0AAN2CA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876454 ID=FC876454; Name=FC876454; organism=Citrus clementina; type=EST; length=903bp
GCACGAGGAAAGAAAAGAACTTAAATCAAAATACTTAATAGCATGGCGAT
ACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACA
GTCAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGT
TGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGG
GGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAA
AAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAAT
GCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGATATATTTT
ACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAG
TTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGAACTATT
GATTTACGTAATTGGAAGTAACCAATTAGGTTTACGACGAAACCTAGAAA
TCGATCACTGATCCAATTTGAGTACCTCTACAGGATAGACCTCAACAGAA
AACTGAAGAGTAACGGCAGCAAGTGATTGAGTTCAGTAGTTCCTCATATA
AAATTATTGACTCTAGAGATATAGTAATATGGAGAAGACTAAATTGTTTC
AAGCACCGACAGAACCAGAAGCGCCCCTTGTTTCAAAGAGAGGAGGACGG
GTTATTCACATTTGATTTGATGGTCAGAGGCGAATTGAAAGCTAAGCAGT
GGTAATAGTAATTCGAAAGATTTCCCGGGGAAAAATAGAGATGTCTCCTA
CGTTACCCATAATATGTGGAAGTATCGACGTATTTTCATAGAGTCATTCG
GTCTGAATGCTACATGAAGAACATAAGCCCGATGACGGAACGGGAAGACC
TAG
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