FC876454

Overview
NameFC876454
Unique NameFC876454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length903
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10362 contig Ccv1_Contig10362:1..903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_CRUWA (50S ribosomal protein L2, chloroplastic OS=Crucihimalaya wallichii GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.597e-69
Identity = 126/131 (96.18%), Postives = 127/131 (96.95%), Query Frame = 1 
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTSTPSTRNGAV SQVKSNPRNNLIYGQH CGKGRNARGIITA HRGGGHKRLYRKIDFRRN KDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct:    1 MAIHLYKTSTPSTRNGAVASQVKSNPRNNLIYGQHHCGKGRNARGIITARHRGGGHKRLYRKIDFRRNAKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131
[Close]
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_CERDE (50S ribosomal protein L2, chloroplastic OS=Ceratophyllum demersum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.597e-69
Identity = 124/131 (94.66%), Postives = 128/131 (97.71%), Query Frame = 1 
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTSTPSTRNG+VDS+VKSNPRNNLIYGQH CGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDT+VSGTEVPI MGNALPL+
Sbjct:    1 MAIHLYKTSTPSTRNGSVDSKVKSNPRNNLIYGQHHCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTVVSGTEVPISMGNALPLT 131
[Close]
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_OLIPU (50S ribosomal protein L2, chloroplastic OS=Olimarabidopsis pumila GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 2.085e-69
Identity = 126/131 (96.18%), Postives = 127/131 (96.95%), Query Frame = 1 
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLI GQH CGKGRNARGIITA HRGGGHKRLYRKIDFRRN KDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct:    1 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLICGQHHCGKGRNARGIITARHRGGGHKRLYRKIDFRRNAKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131
[Close]
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_ARATH (50S ribosomal protein L2, chloroplastic OS=Arabidopsis thaliana GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 2.085e-69
Identity = 126/131 (96.18%), Postives = 127/131 (96.95%), Query Frame = 1 
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLI GQH CGKGRNARGIITA HRGGGHKRLYRKIDFRRN KDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct:    1 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLICGQHHCGKGRNARGIITARHRGGGHKRLYRKIDFRRNAKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131
[Close]
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_POPTR (50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.723e-69
Identity = 125/131 (95.42%), Postives = 128/131 (97.71%), Query Frame = 1 
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTSTPSTRNGAVDSQVKSN RNNLIYGQHRCGKGRN+RGIITA HRGGGHKRLYRKIDFRRNEK IYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTI+SGTEVPIKMGNALPL+
Sbjct:    1 MAIHLYKTSTPSTRNGAVDSQVKSNTRNNLIYGQHRCGKGRNSRGIITARHRGGGHKRLYRKIDFRRNEKYIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIISGTEVPIKMGNALPLT 131
[Close]
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2B_LIRTU (50S ribosomal protein L2-B, chloroplastic OS=Liriodendron tulipifera GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.723e-69
Identity = 125/131 (95.42%), Postives = 127/131 (96.95%), Query Frame = 1 
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLI+GQH CGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKD  GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI MGNALPL+
Sbjct:    1 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIHGQHHCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDTSGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLT 131
[Close]
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2A_POPAL (50S ribosomal protein L2-A, chloroplastic OS=Populus alba GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.723e-69
Identity = 126/131 (96.18%), Postives = 127/131 (96.95%), Query Frame = 1 
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTSTPSTRNGAVDSQVKSN RNNLIYGQHRC KGRNARGIITA HRGGGHKRLYRKIDFRRNEK IYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTI+SGTEVPIKMGNALPLS
Sbjct:    1 MAIHLYKTSTPSTRNGAVDSQVKSNTRNNLIYGQHRCSKGRNARGIITARHRGGGHKRLYRKIDFRRNEKYIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIISGTEVPIKMGNALPLS 131
[Close]
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_LOBMA (50S ribosomal protein L2, chloroplastic OS=Lobularia maritima GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 3.557e-69
Identity = 125/131 (95.42%), Postives = 127/131 (96.95%), Query Frame = 1 
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAI+LYKTSTPSTRNGAVDSQVKSNPRNNLIYGQH CGKGRNARGIIT  HRGGGHKRLYRKIDFRRN KDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct:    1 MAINLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHHCGKGRNARGIITVRHRGGGHKRLYRKIDFRRNAKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131
[Close]
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_DIOEL (50S ribosomal protein L2, chloroplastic OS=Dioscorea elephantipes GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 3.557e-69
Identity = 127/131 (96.95%), Postives = 127/131 (96.95%), Query Frame = 1 
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTSTPSTRNGAVDSQVKSN RNNLI GQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI MGNALPLS
Sbjct:    1 MAIHLYKTSTPSTRNGAVDSQVKSNLRNNLISGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLS 131
[Close]
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_CAPBU (50S ribosomal protein L2, chloroplastic OS=Capsella bursa-pastoris GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 3.557e-69
Identity = 125/131 (95.42%), Postives = 127/131 (96.95%), Query Frame = 1 
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAI+LYKTSTPSTRNGAVDSQVKSNPRNNLIYGQH CGKGRNARGIITA HRGGGHKRLYRKIDFRRN  DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct:    1 MAIYLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHHCGKGRNARGIITARHRGGGHKRLYRKIDFRRNANDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131
The following BLAST results are available for this feature:
BLAST of FC876454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_CRUWA1.597e-6996.1850S ribosomal protein L2, chloroplastic OS=Crucihi... [more]
RK2_CERDE1.597e-6994.6650S ribosomal protein L2, chloroplastic OS=Ceratop... [more]
RK2_OLIPU2.085e-6996.1850S ribosomal protein L2, chloroplastic OS=Olimara... [more]
RK2_ARATH2.085e-6996.1850S ribosomal protein L2, chloroplastic OS=Arabido... [more]
RK2_POPTR2.723e-6995.4250S ribosomal protein L2, chloroplastic OS=Populus... [more]
RK2B_LIRTU2.723e-6995.4250S ribosomal protein L2-B, chloroplastic OS=Lirio... [more]
RK2A_POPAL2.723e-6996.1850S ribosomal protein L2-A, chloroplastic OS=Popul... [more]
RK2_LOBMA3.557e-6995.4250S ribosomal protein L2, chloroplastic OS=Lobular... [more]
RK2_DIOEL3.557e-6996.9550S ribosomal protein L2, chloroplastic OS=Dioscor... [more]
RK2_CAPBU3.557e-6995.4250S ribosomal protein L2, chloroplastic OS=Capsell... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CA01RM1 EHR Citrus clementina cDNA clone KN0AAN2CA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876454 ID=FC876454; Name=FC876454; organism=Citrus clementina; type=EST; length=903bp
GCACGAGGAAAGAAAAGAACTTAAATCAAAATACTTAATAGCATGGCGAT
ACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACA
GTCAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGT
TGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGG
GGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAA
AAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAAT
GCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGATATATTTT
ACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAG
TTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGAACTATT
GATTTACGTAATTGGAAGTAACCAATTAGGTTTACGACGAAACCTAGAAA
TCGATCACTGATCCAATTTGAGTACCTCTACAGGATAGACCTCAACAGAA
AACTGAAGAGTAACGGCAGCAAGTGATTGAGTTCAGTAGTTCCTCATATA
AAATTATTGACTCTAGAGATATAGTAATATGGAGAAGACTAAATTGTTTC
AAGCACCGACAGAACCAGAAGCGCCCCTTGTTTCAAAGAGAGGAGGACGG
GTTATTCACATTTGATTTGATGGTCAGAGGCGAATTGAAAGCTAAGCAGT
GGTAATAGTAATTCGAAAGATTTCCCGGGGAAAAATAGAGATGTCTCCTA
CGTTACCCATAATATGTGGAAGTATCGACGTATTTTCATAGAGTCATTCG
GTCTGAATGCTACATGAAGAACATAAGCCCGATGACGGAACGGGAAGACC
TAG
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