FC876454

Overview
NameFC876454
Unique NameFC876454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length903
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_RICB8 (50S ribosomal protein L2 OS=Rickettsia bellii (strain OSU 85-389) GN=rplB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.152e-25
Identity = 67/133 (50.38%), Postives = 82/133 (61.65%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGA-VD--SQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432
            MA+  +   TPS R    VD  S  K  P   L  G  + G GRN +G IT+  RGGGHKRLYR IDF+RN+ DI   +  IEYDPNR A+I LI Y DGE  YIL P+  ++GD I+S  +  IK+GN LPL
Sbjct:    1 MALKSFNPITPSLRELVQVDRTSLWKGRPFKALTKGISKTG-GRNNQGRITSWQRGGGHKRLYRVIDFKRNKLDISAIVERIEYDPNRTAFIALIKYEDGEHAYILAPQKLVVGDKIISSKDADIKIGNCLPL 132          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_GEOSF (50S ribosomal protein L2 OS=Geobacter sp. (strain FRC-32) GN=rplB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.152e-25
Identity = 60/136 (44.12%), Postives = 86/136 (63.24%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRN---GAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            MAI  YK ++   R+      +    S P  +L+    + G GRN  G IT+ H GGGHK+ YR IDFRR+++DI  ++ ++EYDP R+A I L++Y DGEKRYI+ P    +GDT+V+ T   IK GNALP+ ++
Sbjct:    1 MAIKSYKPTSAGRRHQTCSTFEEITTSQPERSLVVKLKKTG-GRNNFGRITSRHIGGGHKQKYRIIDFRRDKRDIPAKVASVEYDPYRSARIALLNYADGEKRYIIAPLDLKVGDTVVASTSADIKPGNALPIRSI 135          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_DESAA (50S ribosomal protein L2 OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rplB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.152e-25
Identity = 61/136 (44.85%), Postives = 81/136 (59.56%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRN---GAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            MA+   K ++P  R    G  +   K  P  +LI    + G GRNA G +T  HRGGG +R  R +DF+RN+  I  ++  IEYDPNR A + L+HY DGEKRYI+ P    +GD + SG E  IK GNALPL+ +
Sbjct:    1 MAVRKTKPTSPGRRFQEFGTFEEITKKKPEKSLIKVVKKSG-GRNANGRVTCRHRGGGSRRQLRIVDFKRNKTGIPAKVAAIEYDPNRGARLALLHYVDGEKRYIIAPVNLTVGDMVESGPEADIKPGNALPLNNI 135          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_STRE4 (50S ribosomal protein L2 OS=Streptococcus equi subsp. equi (strain 4047) GN=rplB PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.117e-25
Identity = 64/133 (48.12%), Postives = 81/133 (60.90%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRN-GAVDSQ--VKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432
            M I +YK +T   RN  ++D      S P  +L+        GRN  G IT  H+GGGHKR YR IDF+RN+  +   + TIEYDPNR A I L+HY DG K YI+ P+G  +G  IVSG +  IK+GNALPL
Sbjct:    1 MGIKVYKPTTNGRRNMTSLDFAEITTSTPEKSLLVSLKNKA-GRNNNGRITVRHQGGGHKRHYRLIDFKRNKDGVEAVVKTIEYDPNRTANIALVHYTDGVKAYIIAPKGLEVGQRIVSGPDADIKVGNALPL 132          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_RICAH (50S ribosomal protein L2 OS=Rickettsia akari (strain Hartford) GN=rplB PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.117e-25
Identity = 66/136 (48.53%), Postives = 84/136 (61.76%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGA-VD--SQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            MA+  +   TPS R    VD  S  K  P  +L  G  + G GRN +G IT+ HRGGGHK+LYR IDF+RN+ DI   +  IEYDPNR A+I LI Y DGE  YIL P+   +GD ++S  +  IK+GN LPL  +
Sbjct:    1 MALRNFNPITPSLRELVQVDRTSLWKGRPLKSLTKGISKTG-GRNNQGRITSWHRGGGHKKLYRIIDFKRNKIDISAVVERIEYDPNRTAFIALIKYEDGEYSYILAPQKLSVGDRVMSSQDADIKIGNCLPLKFI 135          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_DESVM (50S ribosomal protein L2 OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=rplB PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.117e-25
Identity = 63/136 (46.32%), Postives = 80/136 (58.82%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            MA+   K ++P  R   V   +   +S P  +L  G  +   GRN  G +T   RGGGHKRLYR IDFRRN+  I   +  IEYDPNR A I L+HY DGEKRYIL P G   GD + +G    IK GNA+P++ +
Sbjct:    1 MAVRKLKPTSPGRRFQTVSDFEEVTRSTPEKSLTEGLTK-KSGRNNNGRVTMRRRGGGHKRLYRIIDFRRNKLGIAATVAHIEYDPNRTARIALLHYADGEKRYILAPLGIKQGDMVQAGEGADIKPGNAMPMARI 135          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_DEIGD (50S ribosomal protein L2 OS=Deinococcus geothermalis (strain DSM 11300) GN=rplB PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.117e-25
Identity = 65/137 (47.45%), Postives = 81/137 (59.12%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEK-DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            MA+  Y+  TPS R           K  P   L     + G GRN  G IT+   GGGHKRLYR IDF+R +K ++  ++  IEYDPNR+A I L+HY DGEKRYIL P G  +G T+ +G E   K+GNALPL  V
Sbjct:    1 MAVKKYRPYTPSRRQMTTADFSGLTKKRPEKALTVPLPKTG-GRNNHGRITSRFIGGGHKRLYRIIDFKRRDKANVPAKVAAIEYDPNRSARIALLHYVDGEKRYILAPEGLTVGQTVNAGPEAEPKLGNALPLRFV 136          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_BACFR (50S ribosomal protein L2 OS=Bacteroides fragilis GN=rplB PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.117e-25
Identity = 58/136 (42.65%), Postives = 85/136 (62.50%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRN---GAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            MA+  +K +TP  R+   G  +    S P  +L+YG+   G GRN  G +T  + GGGH+++ R +DF+RN+  +   + TIEYDPNR+A I L+ Y DGEKRYI+ P G  +G T++SG     ++GNALPL  +
Sbjct:    1 MAVRKFKPTTPGQRHKIIGTFEEITASVPEKSLVYGKKSSG-GRNNEGKMTMRYLGGGHRKVIRIVDFKRNKDGVPAVVKTIEYDPNRSARIALLFYADGEKRYIIAPNGLQVGATLMSGENAAPEIGNALPLQNI 135          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_BACFN (50S ribosomal protein L2 OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=rplB PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.117e-25
Identity = 58/136 (42.65%), Postives = 85/136 (62.50%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRN---GAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            MA+  +K +TP  R+   G  +    S P  +L+YG+   G GRN  G +T  + GGGH+++ R +DF+RN+  +   + TIEYDPNR+A I L+ Y DGEKRYI+ P G  +G T++SG     ++GNALPL  +
Sbjct:    1 MAVRKFKPTTPGQRHKIIGTFEEITASVPEKSLVYGKKSSG-GRNNEGKMTMRYLGGGHRKVIRIVDFKRNKDGVPAVVKTIEYDPNRSARIALLFYADGEKRYIIAPNGLQVGATLMSGENAAPEIGNALPLQNI 135          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_ACIF5 (50S ribosomal protein L2 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=rplB PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.117e-25
Identity = 55/111 (49.55%), Postives = 75/111 (67.57%), Query Frame = 1
Query:  109 KSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            K NP + L+  Q   G GRN  G +T  H+GGGHK  YR +DF+RN+ DI G++  +EYDPNR+A+I LI Y DGE+RYIL  +G  +GD ++S  + PIK GN +PL  +
Sbjct:   26 KGNPHSALVEVQSHSG-GRNNLGRVTRRHQGGGHKSHYRLVDFKRNKLDIPGKVERLEYDPNRSAHIALICYVDGERRYILAAKGMSVGDPVLSAEQTPIKPGNCMPLRGI 135          
The following BLAST results are available for this feature:
BLAST of FC876454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_RICB83.152e-2550.3850S ribosomal protein L2 OS=Rickettsia bellii (str... [more]
RL2_GEOSF3.152e-2544.1250S ribosomal protein L2 OS=Geobacter sp. (strain ... [more]
RL2_DESAA3.152e-2544.8550S ribosomal protein L2 OS=Desulfatibacillum alke... [more]
RL2_STRE44.117e-2548.1250S ribosomal protein L2 OS=Streptococcus equi sub... [more]
RL2_RICAH4.117e-2548.5350S ribosomal protein L2 OS=Rickettsia akari (stra... [more]
RL2_DESVM4.117e-2546.3250S ribosomal protein L2 OS=Desulfovibrio vulgaris... [more]
RL2_DEIGD4.117e-2547.4550S ribosomal protein L2 OS=Deinococcus geothermal... [more]
RL2_BACFR4.117e-2542.6550S ribosomal protein L2 OS=Bacteroides fragilis G... [more]
RL2_BACFN4.117e-2542.6550S ribosomal protein L2 OS=Bacteroides fragilis (... [more]
RL2_ACIF54.117e-2549.5550S ribosomal protein L2 OS=Acidithiobacillus ferr... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CA01RM1 EHR Citrus clementina cDNA clone KN0AAN2CA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876454 ID=FC876454; Name=FC876454; organism=Citrus clementina; type=EST; length=903bp
GCACGAGGAAAGAAAAGAACTTAAATCAAAATACTTAATAGCATGGCGAT
ACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACA
GTCAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGT
TGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGG
GGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAA
AAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAAT
GCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGATATATTTT
ACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAG
TTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGAACTATT
GATTTACGTAATTGGAAGTAACCAATTAGGTTTACGACGAAACCTAGAAA
TCGATCACTGATCCAATTTGAGTACCTCTACAGGATAGACCTCAACAGAA
AACTGAAGAGTAACGGCAGCAAGTGATTGAGTTCAGTAGTTCCTCATATA
AAATTATTGACTCTAGAGATATAGTAATATGGAGAAGACTAAATTGTTTC
AAGCACCGACAGAACCAGAAGCGCCCCTTGTTTCAAAGAGAGGAGGACGG
GTTATTCACATTTGATTTGATGGTCAGAGGCGAATTGAAAGCTAAGCAGT
GGTAATAGTAATTCGAAAGATTTCCCGGGGAAAAATAGAGATGTCTCCTA
CGTTACCCATAATATGTGGAAGTATCGACGTATTTTCATAGAGTCATTCG
GTCTGAATGCTACATGAAGAACATAAGCCCGATGACGGAACGGGAAGACC
TAG
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