FC876454
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_THISH (50S ribosomal protein L2 OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=rplB PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.565e-24 Identity = 55/108 (50.93%), Postives = 74/108 (68.52%), Query Frame = 1 Query: 109 KSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432 K P L+ + R G GRN +G IT H GGGHK+ YR IDF+R++ I GR+ +EYDPNR+A+I L+ Y DGE+RY++ P+G GD ++SGT PI+ GN LPL Sbjct: 26 KGEPYAPLVEKKVRSG-GRNNQGRITTRHVGGGHKQRYRIIDFKRDKDGIPGRVERLEYDPNRSAHIALVLYADGERRYVIAPKGVQAGDQLLSGTNAPIRAGNTLPL 132
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_SACD2 (50S ribosomal protein L2 OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=rplB PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.565e-24 Identity = 58/108 (53.70%), Postives = 70/108 (64.81%), Query Frame = 1 Query: 109 KSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432 K P L+ + + G GRN G IT H GGGHK+ YR IDFRRN+ I ++ +EYDPNR AYI L+ Y DGE+RYI+ P+G GD I SG PIK GNALPL Sbjct: 26 KGAPHAPLLEKKSKSG-GRNNNGRITTRHIGGGHKQHYRVIDFRRNKDGIPAKVERLEYDPNRTAYIALVCYADGERRYIIAPKGVKAGDVIQSGDAAPIKPGNALPL 132
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_POLNA (50S ribosomal protein L2 OS=Polaromonas naphthalenivorans (strain CJ2) GN=rplB PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.565e-24 Identity = 63/134 (47.01%), Postives = 83/134 (61.94%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAV----DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432 MA+ K ++P R G V D K P L+ Q + GRN G IT H+GGGHK YR +DF+RN+ I ++ IEYDPNR A+I LI Y DGE+ YI+ PRG +G TI+SG+E PI++GN LP+ Sbjct: 1 MAVIKMKPTSPGMR-GMVKISRDHLHKGEPYAPLLEPQFQ-HSGRNNNGHITVRHKGGGHKHHYRVVDFKRNKDAIPAKVERIEYDPNRTAHIALICYADGERAYIIAPRGLEVGATILSGSEAPIRVGNTLPI 132
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_LACH4 (50S ribosomal protein L2 OS=Lactobacillus helveticus (strain DPC 4571) GN=rplB PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.565e-24 Identity = 63/136 (46.32%), Postives = 79/136 (58.09%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQV---KSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441 MAI +YK +T R+ K+ P L+ Q GRN+ G IT HRGGGHK+ YR IDF+RN+ + + IEYDPNR A I L+HY DG K YIL P+G +GD + SG V IK GNAL L + Sbjct: 1 MAIKIYKPTTNGRRHMTSSDFAEITKTKPEKTLLESQSHTA-GRNSYGHITVRHRGGGHKQKYRIIDFKRNKDNTKAVVKAIEYDPNRTANIALLHYTDGIKAYILAPKGLKVGDIVESGDSVDIKPGNALALKNI 135
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_KOCRD (50S ribosomal protein L2 OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=rplB PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.565e-24 Identity = 64/134 (47.76%), Postives = 81/134 (60.45%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQV---KSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKD-IYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432 MAI +K +TP R +V V ++ P +L+ + G GRN G IT H+GGGHKR YR IDFRR++KD + ++ IEYDPNR A I L+HY DG KRYI+ P GD + SG IK GN LPL Sbjct: 1 MAIRKHKPTTPGRRGSSVADFVEITRTTPEKSLVRPLPKKG-GRNNTGRITTRHKGGGHKRQYRVIDFRRHDKDGVDAKVAHIEYDPNRTARIALLHYVDGTKRYIIAPNRLQQGDVVESGPNADIKPGNNLPL 133
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_GEOUR (50S ribosomal protein L2 OS=Geobacter uraniireducens (strain Rf4) GN=rplB PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.565e-24 Identity = 58/136 (42.65%), Postives = 85/136 (62.50%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRN---GAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441 MAI YK ++ R+ + P +L+ + G GRN G +T+ H GGGHK+ YR IDFRR+++DI ++ ++EYDP R+A I L++Y DGEKRYI+ P +GDT++SG IK GNALP+ ++ Sbjct: 1 MAIKSYKPTSAGRRHQTCSTFEEITTDKPEKSLLVKLKKTG-GRNNFGRVTSRHIGGGHKQKYRIIDFRRDKRDIPAKVSSVEYDPYRSARIALLNYADGEKRYIIAPLDLKVGDTVISGPSADIKPGNALPIRSI 135
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_BORBZ (50S ribosomal protein L2 OS=Borrelia burgdorferi (strain ZS7) GN=rplB PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.565e-24 Identity = 64/138 (46.38%), Postives = 83/138 (60.14%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAV----DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEK-DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441 M I YK T S R D ++P +L G+ + GR++ G I+ RGGGHKR YR IDF R +K I R+ +IEYDPNR+A I L+ Y DGEKRYI+ P+G +GD + SG PIK+GNALPL + Sbjct: 1 MGIKTYKPKTSSLRYKTTLSFDDLSKGNDPLKSLTKGK-KFKSGRDSSGRISIRRRGGGHKRKYRLIDFNRRDKFSIPARVASIEYDPNRSANIALLVYKDGEKRYIISPKGIKVGDVLESGPNAPIKIGNALPLENI 137
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_BORBU (50S ribosomal protein L2 OS=Borrelia burgdorferi GN=rplB PE=3 SV=2) HSP 1 Score: 113.62 bits (283), Expect = 1.565e-24 Identity = 64/138 (46.38%), Postives = 83/138 (60.14%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAV----DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEK-DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441 M I YK T S R D ++P +L G+ + GR++ G I+ RGGGHKR YR IDF R +K I R+ +IEYDPNR+A I L+ Y DGEKRYI+ P+G +GD + SG PIK+GNALPL + Sbjct: 1 MGIKTYKPKTSSLRYKTTLSFDDLSKGNDPLKSLTKGK-KFKSGRDSSGRISIRRRGGGHKRKYRLIDFNRRDKFSIPARVASIEYDPNRSANIALLVYKDGEKRYIISPKGIKVGDVLESGPNAPIKIGNALPLENI 137
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_AZOSE (50S ribosomal protein L2 OS=Azoarcus sp. (strain EbN1) GN=rplB PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.565e-24 Identity = 55/108 (50.93%), Postives = 71/108 (65.74%), Query Frame = 1 Query: 109 KSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432 K P L+ Q + GRN G IT H+GGGHK+ YR +DFRRN+ I R+ +EYDPNR+A I LI Y DGE+ YI+ P+G +G T++SG E PIK GN LP+ Sbjct: 26 KGRPHAALVEKQSK-NAGRNNSGRITVRHQGGGHKQHYRLVDFRRNKDGIAARVERVEYDPNRSANIALICYADGERAYIIAPKGLEVGQTVLSGPEAPIKAGNVLPI 132
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_AQUAE (50S ribosomal protein L2 OS=Aquifex aeolicus GN=rplB PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.565e-24 Identity = 58/117 (49.57%), Postives = 77/117 (65.81%), Query Frame = 1 Query: 118 PRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVS--------GTEVP-IKMGNALPLSAV 441 P +L+ HR RG ITA HRGGGHK+LYR IDF+R++ + ++V+IEYDP R+A ICL+HY DGEKRYI+ P G +GDT++S G +P IK GNA+PL + Sbjct: 44 PEKSLLKWWHRAKGRSRQRGNITARHRGGGHKKLYRIIDFKRDKSLVPAKVVSIEYDPFRSARICLLHYADGEKRYIIWPEGLKVGDTVMSISWEDAEAGKPLPEIKPGNAMPLKYI 160 The following BLAST results are available for this feature:
BLAST of FC876454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC876454 ID=FC876454; Name=FC876454; organism=Citrus clementina; type=EST; length=903bpback to top |