FC876454

Overview
NameFC876454
Unique NameFC876454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length903
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_THISH (50S ribosomal protein L2 OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=rplB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.565e-24
Identity = 55/108 (50.93%), Postives = 74/108 (68.52%), Query Frame = 1
Query:  109 KSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432
            K  P   L+  + R G GRN +G IT  H GGGHK+ YR IDF+R++  I GR+  +EYDPNR+A+I L+ Y DGE+RY++ P+G   GD ++SGT  PI+ GN LPL
Sbjct:   26 KGEPYAPLVEKKVRSG-GRNNQGRITTRHVGGGHKQRYRIIDFKRDKDGIPGRVERLEYDPNRSAHIALVLYADGERRYVIAPKGVQAGDQLLSGTNAPIRAGNTLPL 132          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_SACD2 (50S ribosomal protein L2 OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=rplB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.565e-24
Identity = 58/108 (53.70%), Postives = 70/108 (64.81%), Query Frame = 1
Query:  109 KSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432
            K  P   L+  + + G GRN  G IT  H GGGHK+ YR IDFRRN+  I  ++  +EYDPNR AYI L+ Y DGE+RYI+ P+G   GD I SG   PIK GNALPL
Sbjct:   26 KGAPHAPLLEKKSKSG-GRNNNGRITTRHIGGGHKQHYRVIDFRRNKDGIPAKVERLEYDPNRTAYIALVCYADGERRYIIAPKGVKAGDVIQSGDAAPIKPGNALPL 132          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_POLNA (50S ribosomal protein L2 OS=Polaromonas naphthalenivorans (strain CJ2) GN=rplB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.565e-24
Identity = 63/134 (47.01%), Postives = 83/134 (61.94%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAV----DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432
            MA+   K ++P  R G V    D   K  P   L+  Q +   GRN  G IT  H+GGGHK  YR +DF+RN+  I  ++  IEYDPNR A+I LI Y DGE+ YI+ PRG  +G TI+SG+E PI++GN LP+
Sbjct:    1 MAVIKMKPTSPGMR-GMVKISRDHLHKGEPYAPLLEPQFQ-HSGRNNNGHITVRHKGGGHKHHYRVVDFKRNKDAIPAKVERIEYDPNRTAHIALICYADGERAYIIAPRGLEVGATILSGSEAPIRVGNTLPI 132          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_LACH4 (50S ribosomal protein L2 OS=Lactobacillus helveticus (strain DPC 4571) GN=rplB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.565e-24
Identity = 63/136 (46.32%), Postives = 79/136 (58.09%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQV---KSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            MAI +YK +T   R+          K+ P   L+  Q     GRN+ G IT  HRGGGHK+ YR IDF+RN+ +    +  IEYDPNR A I L+HY DG K YIL P+G  +GD + SG  V IK GNAL L  +
Sbjct:    1 MAIKIYKPTTNGRRHMTSSDFAEITKTKPEKTLLESQSHTA-GRNSYGHITVRHRGGGHKQKYRIIDFKRNKDNTKAVVKAIEYDPNRTANIALLHYTDGIKAYILAPKGLKVGDIVESGDSVDIKPGNALALKNI 135          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_KOCRD (50S ribosomal protein L2 OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=rplB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.565e-24
Identity = 64/134 (47.76%), Postives = 81/134 (60.45%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQV---KSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKD-IYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432
            MAI  +K +TP  R  +V   V   ++ P  +L+    + G GRN  G IT  H+GGGHKR YR IDFRR++KD +  ++  IEYDPNR A I L+HY DG KRYI+ P     GD + SG    IK GN LPL
Sbjct:    1 MAIRKHKPTTPGRRGSSVADFVEITRTTPEKSLVRPLPKKG-GRNNTGRITTRHKGGGHKRQYRVIDFRRHDKDGVDAKVAHIEYDPNRTARIALLHYVDGTKRYIIAPNRLQQGDVVESGPNADIKPGNNLPL 133          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_GEOUR (50S ribosomal protein L2 OS=Geobacter uraniireducens (strain Rf4) GN=rplB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.565e-24
Identity = 58/136 (42.65%), Postives = 85/136 (62.50%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRN---GAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            MAI  YK ++   R+      +      P  +L+    + G GRN  G +T+ H GGGHK+ YR IDFRR+++DI  ++ ++EYDP R+A I L++Y DGEKRYI+ P    +GDT++SG    IK GNALP+ ++
Sbjct:    1 MAIKSYKPTSAGRRHQTCSTFEEITTDKPEKSLLVKLKKTG-GRNNFGRVTSRHIGGGHKQKYRIIDFRRDKRDIPAKVSSVEYDPYRSARIALLNYADGEKRYIIAPLDLKVGDTVISGPSADIKPGNALPIRSI 135          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_BORBZ (50S ribosomal protein L2 OS=Borrelia burgdorferi (strain ZS7) GN=rplB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.565e-24
Identity = 64/138 (46.38%), Postives = 83/138 (60.14%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAV----DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEK-DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            M I  YK  T S R        D    ++P  +L  G+ +   GR++ G I+   RGGGHKR YR IDF R +K  I  R+ +IEYDPNR+A I L+ Y DGEKRYI+ P+G  +GD + SG   PIK+GNALPL  +
Sbjct:    1 MGIKTYKPKTSSLRYKTTLSFDDLSKGNDPLKSLTKGK-KFKSGRDSSGRISIRRRGGGHKRKYRLIDFNRRDKFSIPARVASIEYDPNRSANIALLVYKDGEKRYIISPKGIKVGDVLESGPNAPIKIGNALPLENI 137          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_BORBU (50S ribosomal protein L2 OS=Borrelia burgdorferi GN=rplB PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.565e-24
Identity = 64/138 (46.38%), Postives = 83/138 (60.14%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAV----DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEK-DIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            M I  YK  T S R        D    ++P  +L  G+ +   GR++ G I+   RGGGHKR YR IDF R +K  I  R+ +IEYDPNR+A I L+ Y DGEKRYI+ P+G  +GD + SG   PIK+GNALPL  +
Sbjct:    1 MGIKTYKPKTSSLRYKTTLSFDDLSKGNDPLKSLTKGK-KFKSGRDSSGRISIRRRGGGHKRKYRLIDFNRRDKFSIPARVASIEYDPNRSANIALLVYKDGEKRYIISPKGIKVGDVLESGPNAPIKIGNALPLENI 137          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_AZOSE (50S ribosomal protein L2 OS=Azoarcus sp. (strain EbN1) GN=rplB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.565e-24
Identity = 55/108 (50.93%), Postives = 71/108 (65.74%), Query Frame = 1
Query:  109 KSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432
            K  P   L+  Q +   GRN  G IT  H+GGGHK+ YR +DFRRN+  I  R+  +EYDPNR+A I LI Y DGE+ YI+ P+G  +G T++SG E PIK GN LP+
Sbjct:   26 KGRPHAALVEKQSK-NAGRNNSGRITVRHQGGGHKQHYRLVDFRRNKDGIAARVERVEYDPNRSANIALICYADGERAYIIAPKGLEVGQTVLSGPEAPIKAGNVLPI 132          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RL2_AQUAE (50S ribosomal protein L2 OS=Aquifex aeolicus GN=rplB PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.565e-24
Identity = 58/117 (49.57%), Postives = 77/117 (65.81%), Query Frame = 1
Query:  118 PRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVS--------GTEVP-IKMGNALPLSAV 441
            P  +L+   HR       RG ITA HRGGGHK+LYR IDF+R++  +  ++V+IEYDP R+A ICL+HY DGEKRYI+ P G  +GDT++S        G  +P IK GNA+PL  +
Sbjct:   44 PEKSLLKWWHRAKGRSRQRGNITARHRGGGHKKLYRIIDFKRDKSLVPAKVVSIEYDPFRSARICLLHYADGEKRYIIWPEGLKVGDTVMSISWEDAEAGKPLPEIKPGNAMPLKYI 160          
The following BLAST results are available for this feature:
BLAST of FC876454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_THISH1.565e-2450.9350S ribosomal protein L2 OS=Thioalkalivibrio sp. (... [more]
RL2_SACD21.565e-2453.7050S ribosomal protein L2 OS=Saccharophagus degrada... [more]
RL2_POLNA1.565e-2447.0150S ribosomal protein L2 OS=Polaromonas naphthalen... [more]
RL2_LACH41.565e-2446.3250S ribosomal protein L2 OS=Lactobacillus helvetic... [more]
RL2_KOCRD1.565e-2447.7650S ribosomal protein L2 OS=Kocuria rhizophila (st... [more]
RL2_GEOUR1.565e-2442.6550S ribosomal protein L2 OS=Geobacter uraniireduce... [more]
RL2_BORBZ1.565e-2446.3850S ribosomal protein L2 OS=Borrelia burgdorferi (... [more]
RL2_BORBU1.565e-2446.3850S ribosomal protein L2 OS=Borrelia burgdorferi G... [more]
RL2_AZOSE1.565e-2450.9350S ribosomal protein L2 OS=Azoarcus sp. (strain E... [more]
RL2_AQUAE1.565e-2449.5750S ribosomal protein L2 OS=Aquifex aeolicus GN=rp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CA01RM1 EHR Citrus clementina cDNA clone KN0AAN2CA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876454 ID=FC876454; Name=FC876454; organism=Citrus clementina; type=EST; length=903bp
GCACGAGGAAAGAAAAGAACTTAAATCAAAATACTTAATAGCATGGCGAT
ACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACA
GTCAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGT
TGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGG
GGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAA
AAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAAT
GCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGATATATTTT
ACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAG
TTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGAACTATT
GATTTACGTAATTGGAAGTAACCAATTAGGTTTACGACGAAACCTAGAAA
TCGATCACTGATCCAATTTGAGTACCTCTACAGGATAGACCTCAACAGAA
AACTGAAGAGTAACGGCAGCAAGTGATTGAGTTCAGTAGTTCCTCATATA
AAATTATTGACTCTAGAGATATAGTAATATGGAGAAGACTAAATTGTTTC
AAGCACCGACAGAACCAGAAGCGCCCCTTGTTTCAAAGAGAGGAGGACGG
GTTATTCACATTTGATTTGATGGTCAGAGGCGAATTGAAAGCTAAGCAGT
GGTAATAGTAATTCGAAAGATTTCCCGGGGAAAAATAGAGATGTCTCCTA
CGTTACCCATAATATGTGGAAGTATCGACGTATTTTCATAGAGTCATTCG
GTCTGAATGCTACATGAAGAACATAAGCCCGATGACGGAACGGGAAGACC
TAG
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