FC876454

Overview
NameFC876454
Unique NameFC876454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length903
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10362 contig Ccv1_Contig10362:1..903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_CALFG (50S ribosomal protein L2, chloroplastic OS=Calycanthus floridus var. glaucus GN=rpl2 PE=3 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 2.306e-68
Identity = 124/131 (94.66%), Postives = 125/131 (95.42%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTSTPSTRNGAVD QVKSNPRNNLIYGQH C KGRNARGIITA HRGGGHKRLYRKIDFRRNEKDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI MGNALPL+
Sbjct:    1 MAIHLYKTSTPSTRNGAVDGQVKSNPRNNLIYGQHHCSKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLT 131          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_PLAOC (50S ribosomal protein L2, chloroplastic OS=Platanus occidentalis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 5.136e-68
Identity = 124/130 (95.38%), Postives = 127/130 (97.69%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432
            MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRN+K+I GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGD+IVSGTEV IKMGNAL L
Sbjct:    1 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNKKNIEGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDSIVSGTEVSIKMGNALRL 130          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_NANDO (50S ribosomal protein L2, chloroplastic OS=Nandina domestica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 6.708e-68
Identity = 124/131 (94.66%), Postives = 125/131 (95.42%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTSTPSTRNG V SQVKSNPRNNLIYGQ RCGKGRNARGIITA HRGGGHKRLYRKIDFRRNEKDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI MGNALPL+
Sbjct:    1 MAIHLYKTSTPSTRNGTVGSQVKSNPRNNLIYGQRRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLT 131          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_PHAAN (50S ribosomal protein L2, chloroplastic OS=Phaseolus angularis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 8.761e-68
Identity = 124/132 (93.94%), Postives = 129/132 (97.73%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDS-QVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTSTPSTRNG VDS QVKSNPRN+LIYGQHRCGKGRNARGIITAGHRGGGHKRLYR+IDFRRNEK+IYGRIVTIEYDPNRNA ICLIHYGDGEK+YILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct:    1 MAIHLYKTSTPSTRNGTVDSRQVKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRQIDFRRNEKNIYGRIVTIEYDPNRNASICLIHYGDGEKKYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 132          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_LOTJA (50S ribosomal protein L2, chloroplastic OS=Lotus japonicus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 1.144e-67
Identity = 123/131 (93.89%), Postives = 126/131 (96.18%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTSTPSTRN AVDSQVKSNPRN LIYG H C KGRNARGIITAGHRGGGHKRLYRKIDFRRNEK+IYG+IVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct:    1 MAIHLYKTSTPSTRNRAVDSQVKSNPRNRLIYGLHCCSKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGKIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_NYMAL (50S ribosomal protein L2, chloroplastic OS=Nymphaea alba GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.494e-67
Identity = 123/131 (93.89%), Postives = 124/131 (94.66%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTSTPSTR GAVDSQ KSNPR  LIYGQHRCGKGRNARGIITA HRGGGHKRLYRKIDFRRNEKDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI MGNALPL+
Sbjct:    1 MAIHLYKTSTPSTRKGAVDSQAKSNPRTKLIYGQHRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLT 131          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_PELHO (50S ribosomal protein L2, chloroplastic OS=Pelargonium hortorum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 2.549e-67
Identity = 122/133 (91.73%), Postives = 127/133 (95.49%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            MAIHLYKTSTPSTR  AVDSQ KSNPRN+LIYGQHRCGKGRNARGIITAGHRGGGHKRLYR+IDFRRNE +IYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGA IGDTIVSGTEVPIKMGNALPL+ +
Sbjct:    1 MAIHLYKTSTPSTRKRAVDSQGKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRQIDFRRNENNIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGARIGDTIVSGTEVPIKMGNALPLTNI 133          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_OENPA (50S ribosomal protein L2, chloroplastic OS=Oenothera parviflora GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 3.329e-67
Identity = 123/130 (94.62%), Postives = 125/130 (96.15%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432
            MAIHLYKTSTPSTRNGAVDSQVKSN R NLIYGQ RC KGRNARGIITAGHRGGGHKRLYRKIDFRRNE+DIYGRIV+IEYDPNRNA ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL
Sbjct:    1 MAIHLYKTSTPSTRNGAVDSQVKSNTRKNLIYGQPRCSKGRNARGIITAGHRGGGHKRLYRKIDFRRNERDIYGRIVSIEYDPNRNASICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 130          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_OENGL (50S ribosomal protein L2, chloroplastic OS=Oenothera glazioviana GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 3.329e-67
Identity = 123/130 (94.62%), Postives = 125/130 (96.15%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432
            MAIHLYKTSTPSTRNGAVDSQVKSN R NLIYGQ RC KGRNARGIITAGHRGGGHKRLYRKIDFRRNE+DIYGRIV+IEYDPNRNA ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL
Sbjct:    1 MAIHLYKTSTPSTRNGAVDSQVKSNTRKNLIYGQPRCSKGRNARGIITAGHRGGGHKRLYRKIDFRRNERDIYGRIVSIEYDPNRNASICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 130          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_OENEH (50S ribosomal protein L2, chloroplastic OS=Oenothera elata subsp. hookeri GN=rpl2-A PE=3 SV=2)

HSP 1 Score: 255.373 bits (651), Expect = 3.329e-67
Identity = 123/130 (94.62%), Postives = 125/130 (96.15%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432
            MAIHLYKTSTPSTRNGAVDSQVKSN R NLIYGQ RC KGRNARGIITAGHRGGGHKRLYRKIDFRRNE+DIYGRIV+IEYDPNRNA ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL
Sbjct:    1 MAIHLYKTSTPSTRNGAVDSQVKSNTRKNLIYGQPRCSKGRNARGIITAGHRGGGHKRLYRKIDFRRNERDIYGRIVSIEYDPNRNASICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 130          
The following BLAST results are available for this feature:
BLAST of FC876454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_CALFG2.306e-6894.6650S ribosomal protein L2, chloroplastic OS=Calycan... [more]
RK2_PLAOC5.136e-6895.3850S ribosomal protein L2, chloroplastic OS=Platanu... [more]
RK2_NANDO6.708e-6894.6650S ribosomal protein L2, chloroplastic OS=Nandina... [more]
RK2_PHAAN8.761e-6893.9450S ribosomal protein L2, chloroplastic OS=Phaseol... [more]
RK2_LOTJA1.144e-6793.8950S ribosomal protein L2, chloroplastic OS=Lotus j... [more]
RK2_NYMAL1.494e-6793.8950S ribosomal protein L2, chloroplastic OS=Nymphae... [more]
RK2_PELHO2.549e-6791.7350S ribosomal protein L2, chloroplastic OS=Pelargo... [more]
RK2_OENPA3.329e-6794.6250S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENGL3.329e-6794.6250S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENEH3.329e-6794.6250S ribosomal protein L2, chloroplastic OS=Oenothe... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CA01RM1 EHR Citrus clementina cDNA clone KN0AAN2CA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876454 ID=FC876454; Name=FC876454; organism=Citrus clementina; type=EST; length=903bp
GCACGAGGAAAGAAAAGAACTTAAATCAAAATACTTAATAGCATGGCGAT
ACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACA
GTCAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGT
TGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGG
GGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAA
AAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAAT
GCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGATATATTTT
ACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAG
TTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGAACTATT
GATTTACGTAATTGGAAGTAACCAATTAGGTTTACGACGAAACCTAGAAA
TCGATCACTGATCCAATTTGAGTACCTCTACAGGATAGACCTCAACAGAA
AACTGAAGAGTAACGGCAGCAAGTGATTGAGTTCAGTAGTTCCTCATATA
AAATTATTGACTCTAGAGATATAGTAATATGGAGAAGACTAAATTGTTTC
AAGCACCGACAGAACCAGAAGCGCCCCTTGTTTCAAAGAGAGGAGGACGG
GTTATTCACATTTGATTTGATGGTCAGAGGCGAATTGAAAGCTAAGCAGT
GGTAATAGTAATTCGAAAGATTTCCCGGGGAAAAATAGAGATGTCTCCTA
CGTTACCCATAATATGTGGAAGTATCGACGTATTTTCATAGAGTCATTCG
GTCTGAATGCTACATGAAGAACATAAGCCCGATGACGGAACGGGAAGACC
TAG
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