FC876454
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_CALFG (50S ribosomal protein L2, chloroplastic OS=Calycanthus floridus var. glaucus GN=rpl2 PE=3 SV=1) HSP 1 Score: 259.225 bits (661), Expect = 2.306e-68 Identity = 124/131 (94.66%), Postives = 125/131 (95.42%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435 MAIHLYKTSTPSTRNGAVD QVKSNPRNNLIYGQH C KGRNARGIITA HRGGGHKRLYRKIDFRRNEKDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI MGNALPL+ Sbjct: 1 MAIHLYKTSTPSTRNGAVDGQVKSNPRNNLIYGQHHCSKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLT 131
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_PLAOC (50S ribosomal protein L2, chloroplastic OS=Platanus occidentalis GN=rpl2-A PE=3 SV=1) HSP 1 Score: 258.07 bits (658), Expect = 5.136e-68 Identity = 124/130 (95.38%), Postives = 127/130 (97.69%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRN+K+I GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGD+IVSGTEV IKMGNAL L Sbjct: 1 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNKKNIEGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDSIVSGTEVSIKMGNALRL 130
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_NANDO (50S ribosomal protein L2, chloroplastic OS=Nandina domestica GN=rpl2-A PE=3 SV=1) HSP 1 Score: 257.684 bits (657), Expect = 6.708e-68 Identity = 124/131 (94.66%), Postives = 125/131 (95.42%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435 MAIHLYKTSTPSTRNG V SQVKSNPRNNLIYGQ RCGKGRNARGIITA HRGGGHKRLYRKIDFRRNEKDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI MGNALPL+ Sbjct: 1 MAIHLYKTSTPSTRNGTVGSQVKSNPRNNLIYGQRRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLT 131
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_PHAAN (50S ribosomal protein L2, chloroplastic OS=Phaseolus angularis GN=rpl2 PE=3 SV=1) HSP 1 Score: 257.299 bits (656), Expect = 8.761e-68 Identity = 124/132 (93.94%), Postives = 129/132 (97.73%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDS-QVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435 MAIHLYKTSTPSTRNG VDS QVKSNPRN+LIYGQHRCGKGRNARGIITAGHRGGGHKRLYR+IDFRRNEK+IYGRIVTIEYDPNRNA ICLIHYGDGEK+YILHPRGAIIGDTIVSGTEVPIKMGNALPL+ Sbjct: 1 MAIHLYKTSTPSTRNGTVDSRQVKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRQIDFRRNEKNIYGRIVTIEYDPNRNASICLIHYGDGEKKYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 132
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_LOTJA (50S ribosomal protein L2, chloroplastic OS=Lotus japonicus GN=rpl2-A PE=3 SV=1) HSP 1 Score: 256.914 bits (655), Expect = 1.144e-67 Identity = 123/131 (93.89%), Postives = 126/131 (96.18%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435 MAIHLYKTSTPSTRN AVDSQVKSNPRN LIYG H C KGRNARGIITAGHRGGGHKRLYRKIDFRRNEK+IYG+IVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+ Sbjct: 1 MAIHLYKTSTPSTRNRAVDSQVKSNPRNRLIYGLHCCSKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGKIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 131
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_NYMAL (50S ribosomal protein L2, chloroplastic OS=Nymphaea alba GN=rpl2-A PE=3 SV=1) HSP 1 Score: 256.529 bits (654), Expect = 1.494e-67 Identity = 123/131 (93.89%), Postives = 124/131 (94.66%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435 MAIHLYKTSTPSTR GAVDSQ KSNPR LIYGQHRCGKGRNARGIITA HRGGGHKRLYRKIDFRRNEKDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI MGNALPL+ Sbjct: 1 MAIHLYKTSTPSTRKGAVDSQAKSNPRTKLIYGQHRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLT 131
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_PELHO (50S ribosomal protein L2, chloroplastic OS=Pelargonium hortorum GN=rpl2-A PE=3 SV=1) HSP 1 Score: 255.758 bits (652), Expect = 2.549e-67 Identity = 122/133 (91.73%), Postives = 127/133 (95.49%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441 MAIHLYKTSTPSTR AVDSQ KSNPRN+LIYGQHRCGKGRNARGIITAGHRGGGHKRLYR+IDFRRNE +IYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGA IGDTIVSGTEVPIKMGNALPL+ + Sbjct: 1 MAIHLYKTSTPSTRKRAVDSQGKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRQIDFRRNENNIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGARIGDTIVSGTEVPIKMGNALPLTNI 133
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_OENPA (50S ribosomal protein L2, chloroplastic OS=Oenothera parviflora GN=rpl2-A PE=3 SV=1) HSP 1 Score: 255.373 bits (651), Expect = 3.329e-67 Identity = 123/130 (94.62%), Postives = 125/130 (96.15%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432 MAIHLYKTSTPSTRNGAVDSQVKSN R NLIYGQ RC KGRNARGIITAGHRGGGHKRLYRKIDFRRNE+DIYGRIV+IEYDPNRNA ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL Sbjct: 1 MAIHLYKTSTPSTRNGAVDSQVKSNTRKNLIYGQPRCSKGRNARGIITAGHRGGGHKRLYRKIDFRRNERDIYGRIVSIEYDPNRNASICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 130
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_OENGL (50S ribosomal protein L2, chloroplastic OS=Oenothera glazioviana GN=rpl2-A PE=3 SV=1) HSP 1 Score: 255.373 bits (651), Expect = 3.329e-67 Identity = 123/130 (94.62%), Postives = 125/130 (96.15%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432 MAIHLYKTSTPSTRNGAVDSQVKSN R NLIYGQ RC KGRNARGIITAGHRGGGHKRLYRKIDFRRNE+DIYGRIV+IEYDPNRNA ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL Sbjct: 1 MAIHLYKTSTPSTRNGAVDSQVKSNTRKNLIYGQPRCSKGRNARGIITAGHRGGGHKRLYRKIDFRRNERDIYGRIVSIEYDPNRNASICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 130
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_OENEH (50S ribosomal protein L2, chloroplastic OS=Oenothera elata subsp. hookeri GN=rpl2-A PE=3 SV=2) HSP 1 Score: 255.373 bits (651), Expect = 3.329e-67 Identity = 123/130 (94.62%), Postives = 125/130 (96.15%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432 MAIHLYKTSTPSTRNGAVDSQVKSN R NLIYGQ RC KGRNARGIITAGHRGGGHKRLYRKIDFRRNE+DIYGRIV+IEYDPNRNA ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL Sbjct: 1 MAIHLYKTSTPSTRNGAVDSQVKSNTRKNLIYGQPRCSKGRNARGIITAGHRGGGHKRLYRKIDFRRNERDIYGRIVSIEYDPNRNASICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 130 The following BLAST results are available for this feature:
BLAST of FC876454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876454 ID=FC876454; Name=FC876454; organism=Citrus clementina; type=EST; length=903bpback to top |