FC876454

Overview
NameFC876454
Unique NameFC876454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length903
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10362 contig Ccv1_Contig10362:1..903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_OENBI (50S ribosomal protein L2, chloroplastic OS=Oenothera biennis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 3.329e-67
Identity = 123/130 (94.62%), Postives = 125/130 (96.15%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432
            MAIHLYKTSTPSTRNGAVDSQVKSN R NLIYGQ RC KGRNARGIITAGHRGGGHKRLYRKIDFRRNE+DIYGRIV+IEYDPNRNA ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL
Sbjct:    1 MAIHLYKTSTPSTRNGAVDSQVKSNTRKNLIYGQPRCSKGRNARGIITAGHRGGGHKRLYRKIDFRRNERDIYGRIVSIEYDPNRNASICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 130          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_OENAR (50S ribosomal protein L2, chloroplastic OS=Oenothera argillicola GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 3.329e-67
Identity = 123/130 (94.62%), Postives = 125/130 (96.15%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432
            MAIHLYKTSTPSTRNGAVDSQVKSN R NLIYGQ RC KGRNARGIITAGHRGGGHKRLYRKIDFRRNE+DIYGRIV+IEYDPNRNA ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL
Sbjct:    1 MAIHLYKTSTPSTRNGAVDSQVKSNTRKNLIYGQPRCSKGRNARGIITAGHRGGGHKRLYRKIDFRRNERDIYGRIVSIEYDPNRNASICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 130          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_RANMC (50S ribosomal protein L2, chloroplastic OS=Ranunculus macranthus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 5.679e-67
Identity = 122/131 (93.13%), Postives = 124/131 (94.66%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTSTPSTRNGAV SQVKSNPRNNLIYGQ  CGKGRNARGIIT  HRGGGHKRLYRKIDFRRNEKDI G+IVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI MGNALPL+
Sbjct:    1 MAIHLYKTSTPSTRNGAVGSQVKSNPRNNLIYGQRHCGKGRNARGIITVRHRGGGHKRLYRKIDFRRNEKDISGKIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLT 131          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_SPIOL (50S ribosomal protein L2, chloroplastic OS=Spinacia oleracea GN=rpl2-A PE=1 SV=4)

HSP 1 Score: 250.751 bits (639), Expect = 8.200e-66
Identity = 123/131 (93.89%), Postives = 125/131 (95.42%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTST STRNGAV  QVKSNPRNNLI GQ RCGKGRNARGIITA HRGGGHKRLYRKIDFRRNEKDIYG+IVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+
Sbjct:    1 MAIHLYKTSTSSTRNGAV--QVKSNPRNNLISGQRRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDIYGKIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 129          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_LOLPR (50S ribosomal protein L2, chloroplastic OS=Lolium perenne GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 4.500e-64
Identity = 116/131 (88.55%), Postives = 122/131 (93.13%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MA HLYKT  PSTR G VD QVKSNPRNNLI+G+HRCGKGRN+RGIITA HRGGGHKRLYRKIDFRRN+KDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGT+VPI MGNALPL+
Sbjct:    1 MAKHLYKTPIPSTRKGTVDRQVKSNPRNNLIHGRHRCGKGRNSRGIITARHRGGGHKRLYRKIDFRRNQKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_ILLOL (50S ribosomal protein L2, chloroplastic OS=Illicium oligandrum GN=rpl2 PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 4.500e-64
Identity = 118/133 (88.72%), Postives = 123/133 (92.48%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRN--NLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAIHLYKTSTPSTRNGAVDSQ KS P+   +LIYGQH CGKGRNARG+IT GHRGGGHKRLYRKI+FRRNEKDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGA IGDTIVSGTEVPI MGNALPL+
Sbjct:    1 MAIHLYKTSTPSTRNGAVDSQAKSTPQKQKSLIYGQHHCGKGRNARGVITTGHRGGGHKRLYRKINFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGARIGDTIVSGTEVPISMGNALPLT 133          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_HORVU (50S ribosomal protein L2, chloroplastic OS=Hordeum vulgare GN=rpl2-A PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 4.500e-64
Identity = 116/131 (88.55%), Postives = 122/131 (93.13%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MA HLYKT  PSTR G VD QVKSNPRNNLI+G+HRCGKGRN+RGIITA HRGGGHKRLYRKIDFRRN+KDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGT+VPI MGNALPL+
Sbjct:    1 MAKHLYKTPIPSTRKGTVDRQVKSNPRNNLIHGRHRCGKGRNSRGIITARHRGGGHKRLYRKIDFRRNQKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_AGRST (50S ribosomal protein L2, chloroplastic OS=Agrostis stolonifera GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 4.500e-64
Identity = 116/131 (88.55%), Postives = 122/131 (93.13%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MA HLYKT  PSTR G VD QVKSNPRNNLI+G+HRCGKGRN+RGIITA HRGGGHKRLYRKIDFRRN+KDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGT+VPI MGNALPL+
Sbjct:    1 MAKHLYKTPIPSTRKGTVDRQVKSNPRNNLIHGRHRCGKGRNSRGIITARHRGGGHKRLYRKIDFRRNQKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_SACOF (50S ribosomal protein L2, chloroplastic OS=Saccharum officinarum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 1.002e-63
Identity = 116/131 (88.55%), Postives = 121/131 (92.37%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MA HLYKT  PSTR G VD QVKSNPRN LI+G+HRCGKGRNARGIITA HRGGGHKRLYRKIDFRRN+KDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGT+VPI MGNALPL+
Sbjct:    1 MAKHLYKTPIPSTRKGTVDRQVKSNPRNKLIHGRHRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNQKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_SACHY (50S ribosomal protein L2, chloroplastic OS=Saccharum hybrid GN=rpl2-A PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 1.002e-63
Identity = 116/131 (88.55%), Postives = 121/131 (92.37%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MA HLYKT  PSTR G VD QVKSNPRN LI+G+HRCGKGRNARGIITA HRGGGHKRLYRKIDFRRN+KDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGT+VPI MGNALPL+
Sbjct:    1 MAKHLYKTPIPSTRKGTVDRQVKSNPRNKLIHGRHRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNQKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131          
The following BLAST results are available for this feature:
BLAST of FC876454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_OENBI3.329e-6794.6250S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENAR3.329e-6794.6250S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_RANMC5.679e-6793.1350S ribosomal protein L2, chloroplastic OS=Ranuncu... [more]
RK2_SPIOL8.200e-6693.8950S ribosomal protein L2, chloroplastic OS=Spinaci... [more]
RK2_LOLPR4.500e-6488.5550S ribosomal protein L2, chloroplastic OS=Lolium ... [more]
RK2_ILLOL4.500e-6488.7250S ribosomal protein L2, chloroplastic OS=Illiciu... [more]
RK2_HORVU4.500e-6488.5550S ribosomal protein L2, chloroplastic OS=Hordeum... [more]
RK2_AGRST4.500e-6488.5550S ribosomal protein L2, chloroplastic OS=Agrosti... [more]
RK2_SACOF1.002e-6388.5550S ribosomal protein L2, chloroplastic OS=Sacchar... [more]
RK2_SACHY1.002e-6388.5550S ribosomal protein L2, chloroplastic OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CA01RM1 EHR Citrus clementina cDNA clone KN0AAN2CA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876454 ID=FC876454; Name=FC876454; organism=Citrus clementina; type=EST; length=903bp
GCACGAGGAAAGAAAAGAACTTAAATCAAAATACTTAATAGCATGGCGAT
ACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACA
GTCAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGT
TGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGG
GGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAA
AAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAAT
GCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGATATATTTT
ACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAG
TTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGAACTATT
GATTTACGTAATTGGAAGTAACCAATTAGGTTTACGACGAAACCTAGAAA
TCGATCACTGATCCAATTTGAGTACCTCTACAGGATAGACCTCAACAGAA
AACTGAAGAGTAACGGCAGCAAGTGATTGAGTTCAGTAGTTCCTCATATA
AAATTATTGACTCTAGAGATATAGTAATATGGAGAAGACTAAATTGTTTC
AAGCACCGACAGAACCAGAAGCGCCCCTTGTTTCAAAGAGAGGAGGACGG
GTTATTCACATTTGATTTGATGGTCAGAGGCGAATTGAAAGCTAAGCAGT
GGTAATAGTAATTCGAAAGATTTCCCGGGGAAAAATAGAGATGTCTCCTA
CGTTACCCATAATATGTGGAAGTATCGACGTATTTTCATAGAGTCATTCG
GTCTGAATGCTACATGAAGAACATAAGCCCGATGACGGAACGGGAAGACC
TAG
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