FC876454
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_OENBI (50S ribosomal protein L2, chloroplastic OS=Oenothera biennis GN=rpl2-A PE=3 SV=1) HSP 1 Score: 255.373 bits (651), Expect = 3.329e-67 Identity = 123/130 (94.62%), Postives = 125/130 (96.15%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432 MAIHLYKTSTPSTRNGAVDSQVKSN R NLIYGQ RC KGRNARGIITAGHRGGGHKRLYRKIDFRRNE+DIYGRIV+IEYDPNRNA ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL Sbjct: 1 MAIHLYKTSTPSTRNGAVDSQVKSNTRKNLIYGQPRCSKGRNARGIITAGHRGGGHKRLYRKIDFRRNERDIYGRIVSIEYDPNRNASICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 130
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_OENAR (50S ribosomal protein L2, chloroplastic OS=Oenothera argillicola GN=rpl2-A PE=3 SV=1) HSP 1 Score: 255.373 bits (651), Expect = 3.329e-67 Identity = 123/130 (94.62%), Postives = 125/130 (96.15%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 432 MAIHLYKTSTPSTRNGAVDSQVKSN R NLIYGQ RC KGRNARGIITAGHRGGGHKRLYRKIDFRRNE+DIYGRIV+IEYDPNRNA ICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL Sbjct: 1 MAIHLYKTSTPSTRNGAVDSQVKSNTRKNLIYGQPRCSKGRNARGIITAGHRGGGHKRLYRKIDFRRNERDIYGRIVSIEYDPNRNASICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL 130
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_RANMC (50S ribosomal protein L2, chloroplastic OS=Ranunculus macranthus GN=rpl2-A PE=3 SV=1) HSP 1 Score: 254.603 bits (649), Expect = 5.679e-67 Identity = 122/131 (93.13%), Postives = 124/131 (94.66%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435 MAIHLYKTSTPSTRNGAV SQVKSNPRNNLIYGQ CGKGRNARGIIT HRGGGHKRLYRKIDFRRNEKDI G+IVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPI MGNALPL+ Sbjct: 1 MAIHLYKTSTPSTRNGAVGSQVKSNPRNNLIYGQRHCGKGRNARGIITVRHRGGGHKRLYRKIDFRRNEKDISGKIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLT 131
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_SPIOL (50S ribosomal protein L2, chloroplastic OS=Spinacia oleracea GN=rpl2-A PE=1 SV=4) HSP 1 Score: 250.751 bits (639), Expect = 8.200e-66 Identity = 123/131 (93.89%), Postives = 125/131 (95.42%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435 MAIHLYKTST STRNGAV QVKSNPRNNLI GQ RCGKGRNARGIITA HRGGGHKRLYRKIDFRRNEKDIYG+IVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPL+ Sbjct: 1 MAIHLYKTSTSSTRNGAV--QVKSNPRNNLISGQRRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDIYGKIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLT 129
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_LOLPR (50S ribosomal protein L2, chloroplastic OS=Lolium perenne GN=rpl2-A PE=3 SV=1) HSP 1 Score: 244.973 bits (624), Expect = 4.500e-64 Identity = 116/131 (88.55%), Postives = 122/131 (93.13%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435 MA HLYKT PSTR G VD QVKSNPRNNLI+G+HRCGKGRN+RGIITA HRGGGHKRLYRKIDFRRN+KDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGT+VPI MGNALPL+ Sbjct: 1 MAKHLYKTPIPSTRKGTVDRQVKSNPRNNLIHGRHRCGKGRNSRGIITARHRGGGHKRLYRKIDFRRNQKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_ILLOL (50S ribosomal protein L2, chloroplastic OS=Illicium oligandrum GN=rpl2 PE=3 SV=1) HSP 1 Score: 244.973 bits (624), Expect = 4.500e-64 Identity = 118/133 (88.72%), Postives = 123/133 (92.48%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQVKSNPRN--NLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435 MAIHLYKTSTPSTRNGAVDSQ KS P+ +LIYGQH CGKGRNARG+IT GHRGGGHKRLYRKI+FRRNEKDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGA IGDTIVSGTEVPI MGNALPL+ Sbjct: 1 MAIHLYKTSTPSTRNGAVDSQAKSTPQKQKSLIYGQHHCGKGRNARGVITTGHRGGGHKRLYRKINFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGARIGDTIVSGTEVPISMGNALPLT 133
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_HORVU (50S ribosomal protein L2, chloroplastic OS=Hordeum vulgare GN=rpl2-A PE=2 SV=1) HSP 1 Score: 244.973 bits (624), Expect = 4.500e-64 Identity = 116/131 (88.55%), Postives = 122/131 (93.13%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435 MA HLYKT PSTR G VD QVKSNPRNNLI+G+HRCGKGRN+RGIITA HRGGGHKRLYRKIDFRRN+KDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGT+VPI MGNALPL+ Sbjct: 1 MAKHLYKTPIPSTRKGTVDRQVKSNPRNNLIHGRHRCGKGRNSRGIITARHRGGGHKRLYRKIDFRRNQKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_AGRST (50S ribosomal protein L2, chloroplastic OS=Agrostis stolonifera GN=rpl2-A PE=3 SV=1) HSP 1 Score: 244.973 bits (624), Expect = 4.500e-64 Identity = 116/131 (88.55%), Postives = 122/131 (93.13%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435 MA HLYKT PSTR G VD QVKSNPRNNLI+G+HRCGKGRN+RGIITA HRGGGHKRLYRKIDFRRN+KDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGT+VPI MGNALPL+ Sbjct: 1 MAKHLYKTPIPSTRKGTVDRQVKSNPRNNLIHGRHRCGKGRNSRGIITARHRGGGHKRLYRKIDFRRNQKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_SACOF (50S ribosomal protein L2, chloroplastic OS=Saccharum officinarum GN=rpl2-A PE=3 SV=1) HSP 1 Score: 243.817 bits (621), Expect = 1.002e-63 Identity = 116/131 (88.55%), Postives = 121/131 (92.37%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435 MA HLYKT PSTR G VD QVKSNPRN LI+G+HRCGKGRNARGIITA HRGGGHKRLYRKIDFRRN+KDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGT+VPI MGNALPL+ Sbjct: 1 MAKHLYKTPIPSTRKGTVDRQVKSNPRNKLIHGRHRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNQKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_SACHY (50S ribosomal protein L2, chloroplastic OS=Saccharum hybrid GN=rpl2-A PE=2 SV=1) HSP 1 Score: 243.817 bits (621), Expect = 1.002e-63 Identity = 116/131 (88.55%), Postives = 121/131 (92.37%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435 MA HLYKT PSTR G VD QVKSNPRN LI+G+HRCGKGRNARGIITA HRGGGHKRLYRKIDFRRN+KDI GRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGT+VPI MGNALPL+ Sbjct: 1 MAKHLYKTPIPSTRKGTVDRQVKSNPRNKLIHGRHRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNQKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTKVPISMGNALPLT 131 The following BLAST results are available for this feature:
BLAST of FC876454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876454 ID=FC876454; Name=FC876454; organism=Citrus clementina; type=EST; length=903bpback to top |