FC876454

Overview
NameFC876454
Unique NameFC876454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length903
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10362 contig Ccv1_Contig10362:1..903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_CUSEX (50S ribosomal protein L2, plastid OS=Cuscuta exaltata GN=rpl2 PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.238e-55
Identity = 104/131 (79.39%), Postives = 113/131 (86.26%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            M   L KT  PSTRNG +  QVKS    NLIYG+HRCGKGRNARGIITA HRGGGHKRLYRKIDFRRN+K+IYGRI+TIEYDPNRNA+ICLIHY +GEK YILHPRG IIGDTIVSGTEV IK+GNALPL+
Sbjct:    1 MVRKLNKTYAPSTRNGTIKGQVKSARGKNLIYGKHRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNKKNIYGRIITIEYDPNRNAHICLIHYRNGEKGYILHPRGTIIGDTIVSGTEVSIKIGNALPLT 131          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_CUSRE (50S ribosomal protein L2, plastid OS=Cuscuta reflexa GN=rpl2 PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.923e-55
Identity = 105/131 (80.15%), Postives = 113/131 (86.26%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            M I LYK   PST NG +  QVKS    NLI G+HRCGKGRNARGIITA HRGGGHKRLYRKIDF RN+K+IYGRIVTIEYDPNRNA+ICLIHY +GEKRYILHPRGAIIGDTIVSGTEV IK+GNALPL+
Sbjct:    1 MVIKLYKNYAPSTHNGTLKGQVKSARGKNLISGKHRCGKGRNARGIITARHRGGGHKRLYRKIDFWRNKKNIYGRIVTIEYDPNRNAHICLIHYRNGEKRYILHPRGAIIGDTIVSGTEVSIKIGNALPLT 131          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_CYCTA (50S ribosomal protein L2, chloroplastic OS=Cycas taitungensis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.573e-53
Identity = 99/136 (72.79%), Postives = 113/136 (83.09%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            MAI  Y+T TPSTRN  +   D +V+SNP+  L  GQHRCGKGRN+RGIITA HRGGGHKRLYR+IDF+RNEK I+G IVTIEYDPNR+AYICL+HYGDGEK+YILHPRG IIGDTI SG   PI +GNALPL+ V
Sbjct:    1 MAIRSYRTYTPSTRNRPISSYDGRVRSNPQKKLTSGQHRCGKGRNSRGIITARHRGGGHKRLYRQIDFQRNEKYIFGEIVTIEYDPNRSAYICLVHYGDGEKKYILHPRGVIIGDTITSGPRAPISIGNALPLTDV 136          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_PINTH (50S ribosomal protein L2, chloroplastic OS=Pinus thunbergii GN=rpl2 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.240e-46
Identity = 88/134 (65.67%), Postives = 106/134 (79.10%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAI  Y+  TP TRN +V   D +V+ +P+  L  GQH CGKGRN RGIITA HRGGGHKRLYR+IDFRRN++ I G IVTIEYDPNR+AYIC +HY +G+K YILHPRG +IGDTI+SG + PI +GNALPL+
Sbjct:    1 MAIRSYRILTPDTRNRSVSGFDGRVQLDPQKKLTSGQHHCGKGRNGRGIITARHRGGGHKRLYRQIDFRRNKEHISGEIVTIEYDPNRSAYICKVHYKNGDKMYILHPRGVMIGDTILSGPKAPISIGNALPLT 134          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_PINKO (50S ribosomal protein L2, chloroplastic OS=Pinus koraiensis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.678e-45
Identity = 86/134 (64.18%), Postives = 105/134 (78.36%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAI  Y+  TP T N +V   D +V+ +P+  L  GQH CGKGRNARGIITA HRGGGHKRLYR+IDFRR+++ I G IVTIEYDPNR+AYIC +HY +G+K YILHPRG +IGDTI+SG + PI +GN LPL+
Sbjct:    1 MAIRSYRILTPDTHNRSVSGFDGRVQLDPQKKLTSGQHHCGKGRNARGIITARHRGGGHKRLYRQIDFRRDKEHISGEIVTIEYDPNRSAYICKVHYKNGDKMYILHPRGVMIGDTILSGPKAPISIGNVLPLT 134          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_CRYJA (50S ribosomal protein L2, chloroplastic OS=Cryptomeria japonica GN=rpl2 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 7.979e-45
Identity = 88/132 (66.67%), Postives = 105/132 (79.55%), Query Frame = 1
Query:   58 YKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKD-IYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            Y T TP TR+ ++   D +VKS+P+  L  GQHRCGKGRN  GIIT  HRGGGHKRLYR+IDFRR+EK+ I G+IVTIE DPNR+AYICL+HY DG+K YILHPRG +IGDTI+SG   PI MGNALPL+ +
Sbjct:    6 YSTFTPGTRDKSLSSFDGKVKSHPQKKLTSGQHRCGKGRNNSGIITIRHRGGGHKRLYRQIDFRRSEKNNILGKIVTIESDPNRSAYICLVHYRDGQKTYILHPRGIMIGDTILSGPRAPISMGNALPLTNI 137          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_ANGEV (50S ribosomal protein L2, chloroplastic OS=Angiopteris evecta GN=rpl2 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.032e-44
Identity = 90/134 (67.16%), Postives = 103/134 (76.87%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAI LY+  TP TRN +V   +  V+  PR  L  GQH  GKGRN RGIIT+ HRGGGHKRLYR++DFRRN+ D+ GRI +IEYDPNRN YICL++Y DGEKRYILHPRG  IGD IVSG+E PI  GNALPLS
Sbjct:    1 MAIRLYRAYTPGTRNRSVLGFEELVRIKPRKKLTSGQHS-GKGRNNRGIITSRHRGGGHKRLYRRMDFRRNKIDVPGRIDSIEYDPNRNTYICLVNYEDGEKRYILHPRGIKIGDMIVSGSEAPISRGNALPLS 133          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_CUSGR (50S ribosomal protein L2, plastid OS=Cuscuta gronovii GN=rpl2 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.172e-44
Identity = 91/135 (67.41%), Postives = 104/135 (77.04%), Query Frame = 1
Query:   43 MAIHLYKTSTPST--RNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441
            M I LYK    ST  RNG   ++ K     NLI G+  CGKGRNA GIIT  HRGGGHKRL RKI+F+RNEKDI G+I TIEYDPNRNAYICLIHY +GEK YILHPRGA+IGDTI+SG EV IK+GN+LPL+ +
Sbjct:    1 MIIKLYKIEPTSTLTRNGTSQAKPK-----NLISGKRNCGKGRNANGIITIRHRGGGHKRLCRKINFKRNEKDISGKIKTIEYDPNRNAYICLIHYVNGEKWYILHPRGALIGDTIISGPEVSIKIGNSLPLNEI 130          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_PICAB (50S ribosomal protein L2, chloroplastic OS=Picea abies GN=rpl2 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.352e-43
Identity = 85/134 (63.43%), Postives = 105/134 (78.36%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            MAI  Y+  TP TRN +V   D +V+ +P+  L  GQH CG  RN RGIITA HRGGGHKRLYR+IDFRR+++ I G+IVTIEYDPNR+AYIC +HY +G+K YILHPRG +IGDTI+SG + PI +GNALPL+
Sbjct:    1 MAIRSYRILTPDTRNRSVSGFDGRVQLDPQKKLTSGQHHCGS-RNGRGIITARHRGGGHKRLYRQIDFRRDKEHISGKIVTIEYDPNRSAYICKVHYKNGDKMYILHPRGVMIGDTILSGPKAPISIGNALPLT 133          
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_PHYPA (50S ribosomal protein L2, chloroplastic OS=Physcomitrella patens GN=rpl2 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.841e-42
Identity = 85/134 (63.43%), Postives = 101/134 (75.37%), Query Frame = 1
Query:   43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435
            M I LYK  TP TRN +V      VK+NP+  L + QH   +GRN RG+IT+  RGGGHKRLYR+IDFRRN+K+I G+I TIEYDPNR A ICL+HY DGEKRYILHPRG  +GDTI+S  E PI +GNALPL+
Sbjct:    1 MTIRLYKAYTPGTRNRSVLGFKELVKTNPQKKLTFWQHN-KQGRNNRGVITSRFRGGGHKRLYRQIDFRRNKKNISGKITTIEYDPNRTANICLVHYEDGEKRYILHPRGLKVGDTIISSNEAPILIGNALPLT 133          
The following BLAST results are available for this feature:
BLAST of FC876454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2_CUSEX2.238e-5579.3950S ribosomal protein L2, plastid OS=Cuscuta exalt... [more]
RK2_CUSRE2.923e-5580.1550S ribosomal protein L2, plastid OS=Cuscuta refle... [more]
RK2_CYCTA3.573e-5372.7950S ribosomal protein L2, chloroplastic OS=Cycas t... [more]
RK2_PINTH3.240e-4665.6750S ribosomal protein L2, chloroplastic OS=Pinus t... [more]
RK2_PINKO4.678e-4564.1850S ribosomal protein L2, chloroplastic OS=Pinus k... [more]
RK2_CRYJA7.979e-4566.6750S ribosomal protein L2, chloroplastic OS=Cryptom... [more]
RK2_ANGEV3.032e-4467.1650S ribosomal protein L2, chloroplastic OS=Angiopt... [more]
RK2_CUSGR5.172e-4467.4150S ribosomal protein L2, plastid OS=Cuscuta grono... [more]
RK2_PICAB3.352e-4363.4350S ribosomal protein L2, chloroplastic OS=Picea a... [more]
RK2_PHYPA4.841e-4263.4350S ribosomal protein L2, chloroplastic OS=Physcom... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CA01RM1 EHR Citrus clementina cDNA clone KN0AAN2CA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876454 ID=FC876454; Name=FC876454; organism=Citrus clementina; type=EST; length=903bp
GCACGAGGAAAGAAAAGAACTTAAATCAAAATACTTAATAGCATGGCGAT
ACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACA
GTCAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGT
TGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGG
GGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAA
AAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAAT
GCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGATATATTTT
ACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAG
TTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGAACTATT
GATTTACGTAATTGGAAGTAACCAATTAGGTTTACGACGAAACCTAGAAA
TCGATCACTGATCCAATTTGAGTACCTCTACAGGATAGACCTCAACAGAA
AACTGAAGAGTAACGGCAGCAAGTGATTGAGTTCAGTAGTTCCTCATATA
AAATTATTGACTCTAGAGATATAGTAATATGGAGAAGACTAAATTGTTTC
AAGCACCGACAGAACCAGAAGCGCCCCTTGTTTCAAAGAGAGGAGGACGG
GTTATTCACATTTGATTTGATGGTCAGAGGCGAATTGAAAGCTAAGCAGT
GGTAATAGTAATTCGAAAGATTTCCCGGGGAAAAATAGAGATGTCTCCTA
CGTTACCCATAATATGTGGAAGTATCGACGTATTTTCATAGAGTCATTCG
GTCTGAATGCTACATGAAGAACATAAGCCCGATGACGGAACGGGAAGACC
TAG
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