FC876454
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_CUSEX (50S ribosomal protein L2, plastid OS=Cuscuta exaltata GN=rpl2 PE=3 SV=1) HSP 1 Score: 216.083 bits (549), Expect = 2.238e-55 Identity = 104/131 (79.39%), Postives = 113/131 (86.26%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435 M L KT PSTRNG + QVKS NLIYG+HRCGKGRNARGIITA HRGGGHKRLYRKIDFRRN+K+IYGRI+TIEYDPNRNA+ICLIHY +GEK YILHPRG IIGDTIVSGTEV IK+GNALPL+ Sbjct: 1 MVRKLNKTYAPSTRNGTIKGQVKSARGKNLIYGKHRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNKKNIYGRIITIEYDPNRNAHICLIHYRNGEKGYILHPRGTIIGDTIVSGTEVSIKIGNALPLT 131
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_CUSRE (50S ribosomal protein L2, plastid OS=Cuscuta reflexa GN=rpl2 PE=3 SV=1) HSP 1 Score: 215.698 bits (548), Expect = 2.923e-55 Identity = 105/131 (80.15%), Postives = 113/131 (86.26%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435 M I LYK PST NG + QVKS NLI G+HRCGKGRNARGIITA HRGGGHKRLYRKIDF RN+K+IYGRIVTIEYDPNRNA+ICLIHY +GEKRYILHPRGAIIGDTIVSGTEV IK+GNALPL+ Sbjct: 1 MVIKLYKNYAPSTHNGTLKGQVKSARGKNLISGKHRCGKGRNARGIITARHRGGGHKRLYRKIDFWRNKKNIYGRIVTIEYDPNRNAHICLIHYRNGEKRYILHPRGAIIGDTIVSGTEVSIKIGNALPLT 131
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_CYCTA (50S ribosomal protein L2, chloroplastic OS=Cycas taitungensis GN=rpl2 PE=3 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 3.573e-53 Identity = 99/136 (72.79%), Postives = 113/136 (83.09%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441 MAI Y+T TPSTRN + D +V+SNP+ L GQHRCGKGRN+RGIITA HRGGGHKRLYR+IDF+RNEK I+G IVTIEYDPNR+AYICL+HYGDGEK+YILHPRG IIGDTI SG PI +GNALPL+ V Sbjct: 1 MAIRSYRTYTPSTRNRPISSYDGRVRSNPQKKLTSGQHRCGKGRNSRGIITARHRGGGHKRLYRQIDFQRNEKYIFGEIVTIEYDPNRSAYICLVHYGDGEKKYILHPRGVIIGDTITSGPRAPISIGNALPLTDV 136
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_PINTH (50S ribosomal protein L2, chloroplastic OS=Pinus thunbergii GN=rpl2 PE=3 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 3.240e-46 Identity = 88/134 (65.67%), Postives = 106/134 (79.10%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435 MAI Y+ TP TRN +V D +V+ +P+ L GQH CGKGRN RGIITA HRGGGHKRLYR+IDFRRN++ I G IVTIEYDPNR+AYIC +HY +G+K YILHPRG +IGDTI+SG + PI +GNALPL+ Sbjct: 1 MAIRSYRILTPDTRNRSVSGFDGRVQLDPQKKLTSGQHHCGKGRNGRGIITARHRGGGHKRLYRQIDFRRNKEHISGEIVTIEYDPNRSAYICKVHYKNGDKMYILHPRGVMIGDTILSGPKAPISIGNALPLT 134
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_PINKO (50S ribosomal protein L2, chloroplastic OS=Pinus koraiensis GN=rpl2 PE=3 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 4.678e-45 Identity = 86/134 (64.18%), Postives = 105/134 (78.36%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435 MAI Y+ TP T N +V D +V+ +P+ L GQH CGKGRNARGIITA HRGGGHKRLYR+IDFRR+++ I G IVTIEYDPNR+AYIC +HY +G+K YILHPRG +IGDTI+SG + PI +GN LPL+ Sbjct: 1 MAIRSYRILTPDTHNRSVSGFDGRVQLDPQKKLTSGQHHCGKGRNARGIITARHRGGGHKRLYRQIDFRRDKEHISGEIVTIEYDPNRSAYICKVHYKNGDKMYILHPRGVMIGDTILSGPKAPISIGNVLPLT 134
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_CRYJA (50S ribosomal protein L2, chloroplastic OS=Cryptomeria japonica GN=rpl2 PE=3 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 7.979e-45 Identity = 88/132 (66.67%), Postives = 105/132 (79.55%), Query Frame = 1 Query: 58 YKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKD-IYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441 Y T TP TR+ ++ D +VKS+P+ L GQHRCGKGRN GIIT HRGGGHKRLYR+IDFRR+EK+ I G+IVTIE DPNR+AYICL+HY DG+K YILHPRG +IGDTI+SG PI MGNALPL+ + Sbjct: 6 YSTFTPGTRDKSLSSFDGKVKSHPQKKLTSGQHRCGKGRNNSGIITIRHRGGGHKRLYRQIDFRRSEKNNILGKIVTIESDPNRSAYICLVHYRDGQKTYILHPRGIMIGDTILSGPRAPISMGNALPLTNI 137
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_ANGEV (50S ribosomal protein L2, chloroplastic OS=Angiopteris evecta GN=rpl2 PE=3 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 3.032e-44 Identity = 90/134 (67.16%), Postives = 103/134 (76.87%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435 MAI LY+ TP TRN +V + V+ PR L GQH GKGRN RGIIT+ HRGGGHKRLYR++DFRRN+ D+ GRI +IEYDPNRN YICL++Y DGEKRYILHPRG IGD IVSG+E PI GNALPLS Sbjct: 1 MAIRLYRAYTPGTRNRSVLGFEELVRIKPRKKLTSGQHS-GKGRNNRGIITSRHRGGGHKRLYRRMDFRRNKIDVPGRIDSIEYDPNRNTYICLVNYEDGEKRYILHPRGIKIGDMIVSGSEAPISRGNALPLS 133
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_CUSGR (50S ribosomal protein L2, plastid OS=Cuscuta gronovii GN=rpl2 PE=3 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 5.172e-44 Identity = 91/135 (67.41%), Postives = 104/135 (77.04%), Query Frame = 1 Query: 43 MAIHLYKTSTPST--RNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAV 441 M I LYK ST RNG ++ K NLI G+ CGKGRNA GIIT HRGGGHKRL RKI+F+RNEKDI G+I TIEYDPNRNAYICLIHY +GEK YILHPRGA+IGDTI+SG EV IK+GN+LPL+ + Sbjct: 1 MIIKLYKIEPTSTLTRNGTSQAKPK-----NLISGKRNCGKGRNANGIITIRHRGGGHKRLCRKINFKRNEKDISGKIKTIEYDPNRNAYICLIHYVNGEKWYILHPRGALIGDTIISGPEVSIKIGNSLPLNEI 130
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_PICAB (50S ribosomal protein L2, chloroplastic OS=Picea abies GN=rpl2 PE=3 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 3.352e-43 Identity = 85/134 (63.43%), Postives = 105/134 (78.36%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435 MAI Y+ TP TRN +V D +V+ +P+ L GQH CG RN RGIITA HRGGGHKRLYR+IDFRR+++ I G+IVTIEYDPNR+AYIC +HY +G+K YILHPRG +IGDTI+SG + PI +GNALPL+ Sbjct: 1 MAIRSYRILTPDTRNRSVSGFDGRVQLDPQKKLTSGQHHCGS-RNGRGIITARHRGGGHKRLYRQIDFRRDKEHISGKIVTIEYDPNRSAYICKVHYKNGDKMYILHPRGVMIGDTILSGPKAPISIGNALPLT 133
BLAST of FC876454 vs. ExPASy Swiss-Prot
Match: RK2_PHYPA (50S ribosomal protein L2, chloroplastic OS=Physcomitrella patens GN=rpl2 PE=3 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 4.841e-42 Identity = 85/134 (63.43%), Postives = 101/134 (75.37%), Query Frame = 1 Query: 43 MAIHLYKTSTPSTRNGAV---DSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLS 435 M I LYK TP TRN +V VK+NP+ L + QH +GRN RG+IT+ RGGGHKRLYR+IDFRRN+K+I G+I TIEYDPNR A ICL+HY DGEKRYILHPRG +GDTI+S E PI +GNALPL+ Sbjct: 1 MTIRLYKAYTPGTRNRSVLGFKELVKTNPQKKLTFWQHN-KQGRNNRGVITSRFRGGGHKRLYRQIDFRRNKKNISGKITTIEYDPNRTANICLVHYEDGEKRYILHPRGLKVGDTIISSNEAPILIGNALPLT 133 The following BLAST results are available for this feature:
BLAST of FC876454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876454 ID=FC876454; Name=FC876454; organism=Citrus clementina; type=EST; length=903bpback to top |