FC876468

Overview
NameFC876468
Unique NameFC876468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10367 contig Ccv1_Contig10367:1..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: ERF61_ARATH (Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana GN=ERF061 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.284e-16
Identity = 38/59 (64.41%), Postives = 43/59 (72.88%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPEL 436
            Y+G+R R WGKWVAEIR P  R R+WLG+Y T  AAA AYD A + LRG  ARLNFP L
Sbjct:  136 YRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNL 194          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: ERF56_ARATH (Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.284e-16
Identity = 37/63 (58.73%), Postives = 46/63 (73.02%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQE 448
            Y+G+R R WGKWVAEIR P  R+R+WLG++ T   AA AYD A F LRG  A+LNFP LI ++
Sbjct:   71 YRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEKAALAYDQAAFQLRGDIAKLNFPNLIHED 133          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: ERF57_ARATH (Ethylene-responsive transcription factor ERF057 OS=Arabidopsis thaliana GN=ERF057 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.413e-15
Identity = 37/81 (45.68%), Postives = 55/81 (67.90%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDDLRDVSAASIRKKATEV 502
            Y+G+R R+WGKWVAEIR P  R+R+WLG++ T   AA AYD A   +RG +ARLNFP+++ ++   + + + SI  K   +
Sbjct:  111 YRGVRQRQWGKWVAEIRLPKNRTRLWLGTFETAQEAALAYDQAAHKIRGDNARLNFPDIV-RQGHYKQILSPSINAKIESI 190          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.413e-15
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELI 439
            Y+G+R R WGKW AEIR+PNK +R+WLG++ T   AA AYD A F  RG  A+LNFPE I
Sbjct:   70 YRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFPEHI 129          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: ERF20_ARATH (Ethylene-responsive transcription factor ERF020 OS=Arabidopsis thaliana GN=ERF020 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.410e-15
Identity = 44/91 (48.35%), Postives = 57/91 (62.64%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSA----RLNFPELIFQEDDLRDVSAASIRKKATEVGAKVDA 520
            YKGIR RKWGKWV+EIR P  R R+WLGS++T   AA A+D A + L  PS+      NFP L+       ++S  SI+K A++ G  VDA
Sbjct:   14 YKGIRRRKWGKWVSEIRVPGTRQRLWLGSFSTAEGAAVAHDVAFYCLHRPSSLDDESFNFPHLL-TTSLASNISPKSIQKAASDAGMAVDA 103          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.148e-15
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPE 433
            Y+G+R R WGKW AEIR+P++ +R+WLG++ T  AAARAYD A    RG  A+LNFPE
Sbjct:   77 YRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPE 134          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: ERF58_ARATH (Ethylene-responsive transcription factor ERF058 OS=Arabidopsis thaliana GN=ERF058 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.111e-15
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPEL 436
            Y+G+R R WGKWVAEIR P  R+R+WLG++ T   AA AYD A + LRG  ARLNFP+L
Sbjct:   83 YRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPDL 141          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: ERF60_ARATH (Ethylene-responsive transcription factor ERF060 OS=Arabidopsis thaliana GN=ERF060 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.370e-15
Identity = 37/65 (56.92%), Postives = 47/65 (72.31%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPELIFQEDD 454
            Y+G+R R WGKWVAEIR P  R+R+WLG++ T   AA AYD A + LRG  ARLNFP+  F+ +D
Sbjct:   93 YRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAAMAYDLAAYKLRGEFARLNFPQ--FRHED 155          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.370e-15
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKR-SRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFP 430
            Y+G+R R WGK+ AEIR+PNKR SR+WLG++ T I AARAYD A F LRG  A LNFP
Sbjct:  156 YRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFP 213          
BLAST of FC876468 vs. ExPASy Swiss-Prot
Match: DRE2D_ARATH (Dehydration-responsive element-binding protein 2D OS=Arabidopsis thaliana GN=DREB2D PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.370e-15
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 2
Query:  260 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPE 433
            YKG+R R WGKWVAEIREPN+ +R+WLG++ T   AA AYD+A   L GP A LN PE
Sbjct:   42 YKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSREAALAYDSAARKLYGPEAHLNLPE 99          
The following BLAST results are available for this feature:
BLAST of FC876468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
ERF61_ARATH8.284e-1664.41Ethylene-responsive transcription factor ERF061 OS... [more]
ERF56_ARATH8.284e-1658.73Ethylene-responsive transcription factor ERF056 OS... [more]
ERF57_ARATH1.413e-1545.68Ethylene-responsive transcription factor ERF057 OS... [more]
EF112_ARATH1.413e-1560.00Ethylene-responsive transcription factor ERF112 OS... [more]
ERF20_ARATH2.410e-1548.35Ethylene-responsive transcription factor ERF020 OS... [more]
EF110_ARATH3.148e-1558.62Ethylene-responsive transcription factor ERF110 OS... [more]
ERF58_ARATH4.111e-1561.02Ethylene-responsive transcription factor ERF058 OS... [more]
ERF60_ARATH5.370e-1556.92Ethylene-responsive transcription factor ERF060 OS... [more]
EF102_ARATH5.370e-1565.52Ethylene-responsive transcription factor 5 OS=Arab... [more]
DRE2D_ARATH5.370e-1562.07Dehydration-responsive element-binding protein 2D ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CB05RM1 EHR Citrus clementina cDNA clone KN0AAN2CB05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876468 ID=FC876468; Name=FC876468; organism=Citrus clementina; type=EST; length=683bp
GCACGAGGCGGCACGAGGCACATATATAAGTGACTTGTACAGCATCTGCG
GCAATAAAAGTGGAGTCGCCTTAATTATTTTTGGGTTGGGCATCGGTATG
TGTCCCTCAGAACTCACAACAAGAAGAAAACTTTGATTAATTATCTACGA
AAACGACATGGAAGGAGGCGGGTGCTGCAGCACTTCGACTTCAACGAAAA
GCCCAGAGAAGCGGAAGCCAAGGCAGCAGCGGCAACACCAACAGCAGCAG
GAAAAGCCGTACAAGGGGATAAGGATGAGGAAGTGGGGGAAGTGGGTCGC
TGAAATTAGAGAGCCTAACAAGAGATCCAGAATCTGGCTTGGTTCTTACA
CCACGCCTATAGCCGCCGCACGTGCCTACGACACGGCCGTCTTCTATCTC
CGGGGCCCTTCCGCTCGTCTTAACTTCCCCGAATTGATTTTCCAAGAAGA
CGATCTTCGAGACGTTTCTGCCGCTTCAATACGCAAGAAAGCTACCGAAG
TTGGCGCTAAGGTCGACGCTTTACAAGCTGCTCTCCATGCTGCTAATTCA
GAATCTGAATCCAATTCCAATTCCAATTTCAATTCCATTCGATTGTCCGA
GAAGCCTGATTTAAACAAGTTTCCAGAGAGTTCTGATGAAGATTGATAAC
ACAAAATACTTGCAAGCTCACAATTACCTACCC
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