FC876487

Overview
NameFC876487
Unique NameFC876487
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length829
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876487 vs. ExPASy Swiss-Prot
Match: PRR73_ORYSI (Two-component response regulator-like PRR73 OS=Oryza sativa subsp. indica GN=PRR73 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.959e-12
Identity = 35/47 (74.47%), Postives = 40/47 (85.11%), Query Frame = 1 
Query:  451 REAALNKFRLKRKDRCYDKKVRYESRKKLAEQRPRVKGQFVRQVHSE 591
            REAALNKFR KRK R + KKVRY+SRK+LAEQRPR++GQFVRQ   E
Sbjct:  712 REAALNKFRQKRKVRNFGKKVRYQSRKRLAEQRPRIRGQFVRQSGQE 758
The following BLAST results are available for this feature:
BLAST of FC876487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PRR73_ORYSI5.959e-1274.47Two-component response regulator-like PRR73 OS=Ory... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN2CD02RM1 EHR Citrus clementina cDNA clone KN0AAN2CD02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876487 ID=FC876487; Name=FC876487; organism=Citrus clementina; type=EST; length=829bp
GAATTCGAAACTGATTCTGAGAAGAATTTTTCCAATATTCTTACTGCCTG
TAACTCTTATACTCCAGCTGCCACTCTAAGCACCCAAAGAAGTGTTAACT
CTCTGGCTACTGGTCACTCTAAGCAATCTGAACTTGCAGTGTCACACCCT
CAACAGCGGCCATGTCCTGTCCCTGTTTCAGTGAAAGTTAATTCGACCAA
TCAAGCTATGCACAAGTTAGATCACAAGTTAGACTCTCTGGAGGATCTAG
GGCATATTTCTCCTGCTACTGATCAGAGTGCAAGTAGCAGTTTCTGTAAT
GGTGCTGTAAGTCGACTAAACAGCATGGGGTATGGAAGTGCTTGTGGAAG
TAACAGCAATTTGGATCAGGTTACTGCTGGAAGGGCTGCTGCAGAGAGCA
AGAATGAAGAAGGTTTATTCCCTTCCAATGGCAACTTGCGATCAATACAA
AGAGAAGCAGCTCTTAATAAGTTCCGGTTAAAGCGGAAAGACAGATGTTA
TGATAAGAAGGTCCGGTACGAAAGTAGAAAAAAACTTGCAGAACAGCGTC
CCAGAGTCAAAGGACAATTTGTTCGTCAAGTACATTCGGAGACTCTACCC
CTAGAATCTGAGAATCACTCTGGCAATATATCAGATGGTTAGTGTATAAA
CATATCATAGTTAGAATGGGGATAGAATAGTATATGACTTAGATTAGGTT
TACATTTCTTATAGTGGTTGTGCTGACTTCAGATCCATGTTTGTTCGTAT
ATATGTAAATGACAGATAATACAATTATACAGTGTATCTTTTGTGACAGC
AGCGTTGTAACATATGTATTCCCATTCTT
back to top