FC876499

Overview
NameFC876499
Unique NameFC876499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length829
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_PROMA (Protein grpE OS=Prochlorococcus marinus GN=grpE PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.579e-23
Identity = 65/176 (36.93%), Postives = 99/176 (56.25%), Query Frame = 1
Query:  343 EEAPTSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEK--------------IDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMREDS 828
            EE  TS   E L + +E +AS +   + + E + +S  D+               +D E ++  L +E    R++ +RI+ADFDNFRKR  +++  L        +  +L V+DNFERA+ QI  + E    I+ +YQ++YKQLV++L  LGV P+  VG  FDP LHEA++RE S
Sbjct:    3 EEVSTSN-QEDLVADQEVIASEESDLSPKEEKVSESTIDDDDSLNDAELQSNKQTLDNEARLEQLEKEHETLRSQYVRIAADFDNFRKRQSRDQDDLKLQLTCNTLSEILPVVDNFERARQQINPEGEEALTIHRNYQNLYKQLVDVLKKLGVAPMRVVGQSFDPTLHEALLREPS 177          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_PROM3 (Protein grpE OS=Prochlorococcus marinus (strain MIT 9303) GN=grpE PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.745e-23
Identity = 59/145 (40.69%), Postives = 87/145 (60.00%), Query Frame = 1
Query:  394 ALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMREDS 828
            A  ++D+ + +   A L   E     LE++  +L EE    R++ +RI+ADFDNFRKR  +++  L        +  +L V+DNFERA+ Q++ Q E  + ++ SYQ +YKQLVE+L  LGV  +  VG  FDP LHEA+ RE S
Sbjct:   27 ASMNSDEGQPSAQSAPLADNEARLQQLEQEHSSLREEHETLRSQYMRIAADFDNFRKRQSRDQDDLRLQLICTTLSEILPVVDNFERARQQLEPQGEEAQALHRSYQGLYKQLVEVLKQLGVASMRVVGQAFDPTLHEAVSREPS 171          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_PROM0 (Protein grpE OS=Prochlorococcus marinus (strain MIT 9301) GN=grpE PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.503e-23
Identity = 55/154 (35.71%), Postives = 92/154 (59.74%), Query Frame = 1
Query:  370 ETLQSYKEALASNDDTKAAEIEAL-LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMREDS 828
            E   S + +   ND+  + + E +  +  ++   + + ++  L +E    + + +RISADFDNFRKR  +++  L      + +  +L ++DNFERA+ Q+K ++E  + ++ SYQ +YKQLVE+L   GV P+  VG  FDP LHEA++RE S
Sbjct:   24 EDKSSMQNSTTENDELSSQKTEEINTEELKNTISNNDARLEQLEKEHETLKNQYVRISADFDNFRKRQSRDQDDLKIQLVSKTLTAILPIVDNFERARQQLKPESEEAQALHRSYQGLYKQLVEVLKQQGVSPMRVVGQQFDPNLHEAVLREPS 177          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_GLOVI (Protein grpE OS=Gloeobacter violaceus GN=grpE PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.503e-23
Identity = 56/152 (36.84%), Postives = 90/152 (59.21%), Query Frame = 1
Query:  382 SYKEALASNDDTKAAEIEALLKSFED---EKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMREDS 828
            SY EA  +  +  AAE    +   +    E  DL++K+ +  ++ +       R+ ADFDNFRKRT++E+  L      ++++ +L V DNF+RA+   +   E EE ++NSYQ +Y+Q + +L  +GV  +E +G PFDP  HEAI+RE+S
Sbjct:   17 SYAEAATT--EASAAEATGFIARIDQLAAENSDLQKKLADYEQKYT-------RLMADFDNFRKRTQREKDELAYFVSAKLLKDILPVFDNFDRARAFAQPDNEREEKLHNSYQQVYRQFLSVLEKMGVTAMEAIGQPFDPAQHEAILREES 159          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_PROM2 (Protein grpE OS=Prochlorococcus marinus (strain MIT 9215) GN=grpE PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.799e-23
Identity = 55/154 (35.71%), Postives = 94/154 (61.04%), Query Frame = 1
Query:  370 ETLQSYKEALASNDDTKAAEIEAL-LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMREDS 828
            E + S + +   ND+  + + EA+  +  ++   + + ++  L +E    + + +RISADFDNFRKR  +++  L      + +  +L ++DNFERA+ Q++ ++E  + ++ SYQ +YKQLVE+L   GV P+  VG  FDP LHEA++RE S
Sbjct:   24 EDISSEQNSTNENDELTSQKKEAINTEELKNTISNNDARLKQLEKEHETLKNQYVRISADFDNFRKRQSRDQDDLKIQIVSKTLTAILPIVDNFERARQQLQPESEEAQALHRSYQGLYKQLVEVLKQQGVSPMRVVGQQFDPNLHEAVLREPS 177          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_PROM9 (Protein grpE OS=Prochlorococcus marinus (strain MIT 9312) GN=grpE PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.671e-22
Identity = 56/154 (36.36%), Postives = 90/154 (58.44%), Query Frame = 1
Query:  370 ETLQSYKEALASNDDTKAAEIEAL-LKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMREDS 828
            E   S  E    ND+    + E +  +  ++   + + ++  L +E    + + +RISADFDNFRKR  +++  L      + +  +L ++DNFERA+ Q+K ++E  + ++ SYQ +YKQLVE+L   GV P+  VG  FDP LHEA++RE S
Sbjct:   24 EDNSSAAEKTIENDELSPQKTEEINTEELKNTISNNDARLEQLEKEHETLKNQYVRISADFDNFRKRQSRDQDDLKVQLVSKTLTAILPIVDNFERARQQLKPESEEAQALHRSYQGLYKQLVEVLKQQGVSPMRVVGQQFDPNLHEAVLREPS 177          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_PROMM (Protein grpE OS=Prochlorococcus marinus (strain MIT 9313) GN=grpE PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.183e-22
Identity = 57/145 (39.31%), Postives = 88/145 (60.69%), Query Frame = 1
Query:  394 ALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMREDS 828
            A  ++D+ +++   A L   E     LE++  +L EE    R++ +RI+ADFDNFRKR  +++  L        +  +L V+DNFERA+ Q++ Q E  + ++ SYQ +YKQLV++L  +GV  +  VG  FDP LHEA+ RE S
Sbjct:   27 ASINSDEGQSSAQSAPLADNEARLQQLEQEHSSLREEHETLRSQYMRIAADFDNFRKRQSRDQDDLRFQLICTTLSEILPVVDNFERARQQLEPQGEEAQALHRSYQGLYKQLVDVLKQMGVASMRVVGQVFDPTLHEAVSREPS 171          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_PROMT (Protein grpE OS=Prochlorococcus marinus (strain NATL2A) GN=grpE PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.851e-22
Identity = 51/120 (42.50%), Postives = 76/120 (63.33%), Query Frame = 1
Query:  469 DLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMREDS 828
            D E ++  L +E     ++ +RI+ADFDNFRKR  +++  L        +  +L ++DNFERA+ Q+  + E  + ++ SYQ +YKQLVE+L +LGV P+  V   FDP LHEA+MRE S
Sbjct:   75 DTEARLQQLEKEHETLNSQYMRIAADFDNFRKRQTRDQDDLKIQLTCTTLSEILPIVDNFERARQQLNPEGEEAQALHRSYQGLYKQLVEVLKNLGVAPMRVVDQAFDPSLHEAVMREPS 194          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_PROM1 (Protein grpE OS=Prochlorococcus marinus (strain NATL1A) GN=grpE PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.851e-22
Identity = 51/120 (42.50%), Postives = 76/120 (63.33%), Query Frame = 1
Query:  469 DLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMREDS 828
            D E ++  L +E     ++ +RI+ADFDNFRKR  +++  L        +  +L ++DNFERA+ Q+  + E  + ++ SYQ +YKQLVE+L +LGV P+  V   FDP LHEA+MRE S
Sbjct:   75 DTEARLQQLEKEHETLNSQYMRIAADFDNFRKRQTRDQDDLKIQLTCTTLSEILPIVDNFERARQQLNPEGEEAQALHRSYQGLYKQLVEVLKNLGVAPMRVVDQAFDPSLHEAVMREPS 194          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_PROM5 (Protein grpE OS=Prochlorococcus marinus (strain MIT 9515) GN=grpE PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.724e-22
Identity = 54/150 (36.00%), Postives = 90/150 (60.00%), Query Frame = 1
Query:  379 QSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMREDS 828
            Q+ ++    +D+ +  + E L  +  +    LE+    L +E    +++ +RI+ADFDNFRKR  +++  L      + +  +L ++DNFERA+ Q+K + +  + ++ SYQ +YKQLVE+L   GV P+  VG  FDP LHEA++RE S
Sbjct:   32 QTNEDKKLPDDNNEKIDAEDLKNTITNNDARLEQ----LEKEHETLKSQYVRIAADFDNFRKRQSRDQDDLKIQLVSKALTAILPIVDNFERARQQLKPEGDEAQTLHRSYQGLYKQLVEVLKQQGVAPMRVVGQQFDPNLHEAVLREPS 177          
The following BLAST results are available for this feature:
BLAST of FC876499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GRPE_PROMA2.579e-2336.93Protein grpE OS=Prochlorococcus marinus GN=grpE PE... [more]
GRPE_PROM35.745e-2340.69Protein grpE OS=Prochlorococcus marinus (strain MI... [more]
GRPE_PROM07.503e-2335.71Protein grpE OS=Prochlorococcus marinus (strain MI... [more]
GRPE_GLOVI7.503e-2336.84Protein grpE OS=Gloeobacter violaceus GN=grpE PE=3... [more]
GRPE_PROM29.799e-2335.71Protein grpE OS=Prochlorococcus marinus (strain MI... [more]
GRPE_PROM91.671e-2236.36Protein grpE OS=Prochlorococcus marinus (strain MI... [more]
GRPE_PROMM2.183e-2239.31Protein grpE OS=Prochlorococcus marinus (strain MI... [more]
GRPE_PROMT2.851e-2242.50Protein grpE OS=Prochlorococcus marinus (strain NA... [more]
GRPE_PROM12.851e-2242.50Protein grpE OS=Prochlorococcus marinus (strain NA... [more]
GRPE_PROM53.724e-2236.00Protein grpE OS=Prochlorococcus marinus (strain MI... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN2CE04RM1 EHR Citrus clementina cDNA clone KN0AAN2CE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876499 ID=FC876499; Name=FC876499; organism=Citrus clementina; type=EST; length=829bp
GCACGAGGCATAAAAACGCCGCCGTTTCACGCATCTTCTCTTCCCGCCAC
ACGTGCAGCCCCCATTTCCTTAAAATCTCCGAAACCCATCTGTATTTCCT
TCAGACAACGTCTAATAAGCACCAGCAGACTTTATCATCGGTCAAATTCT
CTCCGGTTCGTAAGTGTTCAGTCTCTCCGGTTCGTAAAGTTCTCTCCTTT
AGCTTCAACTGGAGAAACTGAAACCCAAGAGGAAATTCAGGAACCCCAAA
TTGAGGAATCTTCCGATGGTGCTGTTGGCATTGAAGATGGCACTAGTGAC
GATGATAGCTCTGGAGCTACTAGTGATGACACCTCAGATGCTGAGGAAGC
ACCTACTTCATTCATTATGGAAACACTCCAATCATACAAAGAAGCTTTGG
CCAGTAATGACGATACCAAAGCTGCTGAAATAGAGGCTTTATTAAAATCC
TTTGAAGATGAGAAAATTGATCTTGAGAGGAAAGTTGTTAACTTGTCTGA
AGAATTGTCAGCTGAGAGGGCTCGTATTCTTAGGATCAGTGCTGACTTTG
ACAATTTTCGTAAGAGAACGGAGAAGGAACGCCTTTCACTGGTAACAAAT
GCTCAAGGAGAAGTCATGGAGAGATTGTTGCAAGTTTTGGATAATTTTGA
GAGAGCTAAAACTCAAATTAAGGTGCAGACCGAGGGAGAGGAGNAAATAA
ACAACAGCTATCAGAGCATATATAAGCAATTAGTGGAAATCCTANGATCA
CTTGGTGTTGTTCCTGTGGAGACGGTTGGGAATCCTTTTGATCCATTGCT
TCACGAAGCAATTATGCGCGAGGATTCCA
back to top