FC876499

Overview
NameFC876499
Unique NameFC876499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length829
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_GEOKA (Protein grpE OS=Geobacillus kaustophilus GN=grpE PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.208e-16
Identity = 47/126 (37.30%), Postives = 73/126 (57.94%), Query Frame = 1
Query:  457 DEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEE--XINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMREDS 828
            +E    + ++  L  +LS    R LR+ ADF+NFR+RT +E  +        +   LL VLDNFERA   +K++T+ E+   I    + +Y+ LV+ L   GV  +E VG PFDP LH+A+M+ ++
Sbjct:   59 EELAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERA---LKIETDNEQAKSILQGMEMVYRSLVDALKKEGVEAIEAVGKPFDPYLHQAVMQAEA 181          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_BACP2 (Protein grpE OS=Bacillus pumilus (strain SAFR-032) GN=grpE PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.208e-16
Identity = 46/122 (37.70%), Postives = 70/122 (57.38%), Query Frame = 1
Query:  454 EDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMR 819
            +DE+   + K+  L + L  +  +ILR+ ADF+N+++R   E  ++       V+  LL  LDNFERA   I    E  + +    Q +Y+QLVE L + GV P+E VG  FDP LH+A+M+
Sbjct:   30 QDEQSAFQEKIDELQQLLDEKENKILRVQADFENYKRRARTEVETVQKYRSQHVVSDLLPALDNFERA-LGIDPDNEQAKSLLEGMQMVYRQLVEALKNEGVEPIEAVGKEFDPNLHQAVMQ 150          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_BACCN (Protein grpE OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=grpE PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.376e-15
Identity = 52/167 (31.14%), Postives = 91/167 (54.49%), Query Frame = 1
Query:  343 EEAPTSFIMETLQSY-KEALASNDDTKAAEIEALLKSFEDEKID---LERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMR-EDS 828
            EE     + ET ++  +EA    +  ++   EA  ++  +EK +   L+ KV  L  +L+    R+LR+ ADF+N+++R + ++ +        ++  +L  LDNFERA  Q++   E  + +    + +Y+QL+E L   GV  +E VG  FDP  H+A+M+ EDS
Sbjct:    2 EERNEQVVEETKEAQTEEATIEKNSEESVTEEATEETVVEEKSEAALLQEKVDELQAKLTETEGRMLRLQADFENYKRRVQLDKQAAEKYRAQSLVSDILPALDNFERA-MQVEASDEQTKSLLQGMEMVYRQLLEALNKEGVEMIEAVGKQFDPHEHQAVMQVEDS 167          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_CARHZ (Protein grpE OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=grpE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.758e-15
Identity = 47/122 (38.52%), Postives = 73/122 (59.84%), Query Frame = 1
Query:  457 DEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMRE 822
            DE  + E +   L +E +  + + LR+ ADFDN+RKRT++E+  L+     E +++LL VLDNFERA   +K +    + +    +  ++QL+EIL    V  +E  G PF+P LHEA+M E
Sbjct:   40 DEAKNWEEEYNKLLDEHNRLKNQYLRLYADFDNYRKRTQREKEELLKYEGMEFLKKLLPVLDNFERA---LKEKDTDPQKVIEGVELTHRQLLEILNQHEVKAIEAQGQPFNPELHEALMVE 158          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_BACHD (Protein grpE OS=Bacillus halodurans GN=grpE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.758e-15
Identity = 46/139 (33.09%), Postives = 77/139 (55.40%), Query Frame = 1
Query:  403 SNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMR 819
            SN+D+  A  E       +E  + E+++  L  ++     R+LRI AD+DNFR+R  +E+ +        ++E LL  LDNFERA   ++ + E  + +    + +Y+Q+ E L   G+  +ET G  FDP LH+A+M+
Sbjct:   28 SNEDSDEANEEG------NELSEEEKRIAELEGQVDELNQRLLRIQADYDNFRRRQREEKEAAAKYRAQSLIEELLPALDNFERA-LLVEPEQEETKTLLKGMEMVYRQVSEALKKEGLEVIETKGETFDPHLHQAVMQ 159          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_ALKOO (Protein grpE OS=Alkaliphilus oremlandii (strain OhILAs) GN=grpE PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.758e-15
Identity = 49/146 (33.56%), Postives = 81/146 (55.48%), Query Frame = 1
Query:  391 EALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMREDS 828
            E++ SN +    E+E+   + ED    LE+K+   + +     ++  R+ ADF N++KR EKE+  +   A  ++   LL ++DNFERA  Q   +TE  + +      +YKQL++ L   GV  +E +  PFD  LH A+M+E+S
Sbjct:   16 ESVDSNLEATVEEMESTKGTSED----LEQKLAEKTAQYEDIFSQFQRLQADFTNYKKRVEKEKGDIYLYANEKIALDLLNIIDNFERA-IQSTEKTEENDSLLQGISLVYKQLLDTLTKHGVEEIEAMEKPFDMNLHYAVMQEES 156          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_METST (Protein grpE OS=Methanosphaera stadtmanae (strain DSM 3091) GN=grpE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.520e-15
Identity = 47/138 (34.06%), Postives = 79/138 (57.25%), Query Frame = 1
Query:  415 TKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMREDS 828
            ++A EIE   K  E EK  +E  +    +E+   + ++ RI ADF+NF+KR+ KE+   V  A   ++ ++L+  ++ ERA     ++ + ++ +    + IYK+L +IL   GV P+ET    FDP  HEA+M ED+
Sbjct:    9 SEAEEIEQNNKEEEQEK-SVEELLEEKEQEIQQYKDKLQRIHADFENFKKRSIKEKQEFVKFANEGLILKVLEAYEDLERA-----LEVKEDKNLREGVELIYKKLTKILEDEGVEPIETKNQKFDPYKHEALMTEDN 140          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_BACST (Protein grpE OS=Bacillus stearothermophilus GN=grpE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.822e-15
Identity = 58/165 (35.15%), Postives = 84/165 (50.91%), Query Frame = 1
Query:  343 EEAPTSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEX--INNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMR-EDS 828
            EE   +   E  Q+ +EAL   ++   AE E       DE      K      E      R LR+ ADF+NFR+RT +E  +        ++  LL  LDNFERA   +K++TE E+   I    + +Y+ +++ L   GV  +E VG PFDP LH+A+M+ EDS
Sbjct:   37 EENAENLQQENTQAQQEAL---EEQPKAEQEQ-----NDELAAANAKNCRTRSEDKRNGNRYLRLYADFENFRRRTRQEMEAAEKYRAQSLVSDLLPALDNFERA---LKIETENEQAKSILQGMEMVYRSVLDALKKEGVEAIEAVGKPFDPHLHQAVMQVEDS 190          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_OCEIH (Protein grpE OS=Oceanobacillus iheyensis GN=grpE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.283e-14
Identity = 50/147 (34.01%), Postives = 86/147 (58.50%), Query Frame = 1
Query:  379 QSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMR 819
            ++ +E +  ND  +  E E   +  ++E ++ + ++  L +E      R++R+ A+FDN+++RT KER +       +++  LL  +DNFERA  Q++V TE  + I +    +Y+QL E L S GV P++T G  FDP LH A+M+
Sbjct:   13 ENEQEIIDVNDSGEQPE-ENETEQPQEEAVEND-EIAKLQQEKDETYNRLVRLQAEFDNYKRRTLKEREADRKYKSQDLITELLPAIDNFERA-LQVEV-TEENKSIIDGIMMVYRQLQEALTSQGVEPIKTEGEVFDPNLHHAVMQ 155          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_BACC1 (Protein grpE OS=Bacillus cereus (strain ATCC 10987) GN=grpE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.283e-14
Identity = 50/163 (30.67%), Postives = 85/163 (52.15%), Query Frame = 1
Query:  343 EEAPTSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMR-EDS 828
            EE     + E  +  KEA      T     E++ +  + E   L+ KV  L  +L+    R+LR+ ADF+N+++R + ++ +        ++  +L  LDNFERA  Q++   E  + +    + +Y+QL+E +   GV  +E VG  FDP  H+A+M+ EDS
Sbjct:    2 EERNEQVVEEVKEEVKEAQVEEAVTSEDSEESVEE--KSEAALLQEKVDELQAKLTETEGRMLRLQADFENYKRRVQMDKQAAEKYRAQSLVSDILPALDNFERA-MQVEANDEQMKSLLQGMEMVYRQLLEAMTKEGVEAIEAVGKQFDPHEHQAVMQVEDS 161          
The following BLAST results are available for this feature:
BLAST of FC876499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GRPE_GEOKA5.208e-1637.30Protein grpE OS=Geobacillus kaustophilus GN=grpE P... [more]
GRPE_BACP25.208e-1637.70Protein grpE OS=Bacillus pumilus (strain SAFR-032)... [more]
GRPE_BACCN3.376e-1531.14Protein grpE OS=Bacillus cereus subsp. cytotoxis (... [more]
GRPE_CARHZ5.758e-1538.52Protein grpE OS=Carboxydothermus hydrogenoformans ... [more]
GRPE_BACHD5.758e-1533.09Protein grpE OS=Bacillus halodurans GN=grpE PE=3 S... [more]
GRPE_ALKOO5.758e-1533.56Protein grpE OS=Alkaliphilus oremlandii (strain Oh... [more]
GRPE_METST7.520e-1534.06Protein grpE OS=Methanosphaera stadtmanae (strain ... [more]
GRPE_BACST9.822e-1535.15Protein grpE OS=Bacillus stearothermophilus GN=grp... [more]
GRPE_OCEIH1.283e-1434.01Protein grpE OS=Oceanobacillus iheyensis GN=grpE P... [more]
GRPE_BACC11.283e-1430.67Protein grpE OS=Bacillus cereus (strain ATCC 10987... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CE04RM1 EHR Citrus clementina cDNA clone KN0AAN2CE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876499 ID=FC876499; Name=FC876499; organism=Citrus clementina; type=EST; length=829bp
GCACGAGGCATAAAAACGCCGCCGTTTCACGCATCTTCTCTTCCCGCCAC
ACGTGCAGCCCCCATTTCCTTAAAATCTCCGAAACCCATCTGTATTTCCT
TCAGACAACGTCTAATAAGCACCAGCAGACTTTATCATCGGTCAAATTCT
CTCCGGTTCGTAAGTGTTCAGTCTCTCCGGTTCGTAAAGTTCTCTCCTTT
AGCTTCAACTGGAGAAACTGAAACCCAAGAGGAAATTCAGGAACCCCAAA
TTGAGGAATCTTCCGATGGTGCTGTTGGCATTGAAGATGGCACTAGTGAC
GATGATAGCTCTGGAGCTACTAGTGATGACACCTCAGATGCTGAGGAAGC
ACCTACTTCATTCATTATGGAAACACTCCAATCATACAAAGAAGCTTTGG
CCAGTAATGACGATACCAAAGCTGCTGAAATAGAGGCTTTATTAAAATCC
TTTGAAGATGAGAAAATTGATCTTGAGAGGAAAGTTGTTAACTTGTCTGA
AGAATTGTCAGCTGAGAGGGCTCGTATTCTTAGGATCAGTGCTGACTTTG
ACAATTTTCGTAAGAGAACGGAGAAGGAACGCCTTTCACTGGTAACAAAT
GCTCAAGGAGAAGTCATGGAGAGATTGTTGCAAGTTTTGGATAATTTTGA
GAGAGCTAAAACTCAAATTAAGGTGCAGACCGAGGGAGAGGAGNAAATAA
ACAACAGCTATCAGAGCATATATAAGCAATTAGTGGAAATCCTANGATCA
CTTGGTGTTGTTCCTGTGGAGACGGTTGGGAATCCTTTTGATCCATTGCT
TCACGAAGCAATTATGCGCGAGGATTCCA
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