FC876499

Overview
NameFC876499
Unique NameFC876499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length829
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_CLOAB (Protein grpE OS=Clostridium acetobutylicum GN=grpE PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.675e-14
Identity = 50/159 (31.45%), Postives = 83/159 (52.20%), Query Frame = 1
Query:  343 EEAPTSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGE-EXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIM 816
            E+  T    E ++    +  S+ + ++   E   ++  +E + L+ +   L  EL A + R+LR+SA+++N+R RT KE+  + T+A  +V+  +L  LDN ERA       TEG  E I    + + KQ    L  LG+  + + G  FDP LH A+M
Sbjct:   12 EDEETIASQEEIEVEGNSEESSKEEESNNSEISDENLSEENLKLKDENEKLKNELDAAKDRLLRLSAEYENYRNRTAKEKEGIYTDACSDVINEMLPTLDNLERA-----ASTEGSAEDIKKGVEMVVKQFKNSLSKLGIEEIPSEGK-FDPNLHNAVM 164          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_BRECH (Protein grpE (Fragment) OS=Brevibacillus choshinensis GN=grpE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.188e-14
Identity = 44/143 (30.77%), Postives = 73/143 (51.05%), Query Frame = 1
Query:  391 EALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMR 819
            E   + D T   E        E   ++ E++  +   +    + R+LR  AD +N R+R  KE+  L   A  +V+E LL +LDNFERA    K ++   E +      +Y+Q+V++    G+V +   G PFDP +H+A+M+
Sbjct:    3 EEKLTQDPTAEEEQTETADQQESADVNWEQEAAHWKAQAEEHQNRMLRTMADMENLRRRVRKEQEDLAKYASQKVVEELLPILDNFERALAADK-ESMTVESLLTGVDMVYRQMVQVFDKEGLVAIAAKGQPFDPHVHQAVMQ 144          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_BACC7 (Protein grpE OS=Bacillus cereus (strain AH187) GN=grpE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.188e-14
Identity = 50/163 (30.67%), Postives = 84/163 (51.53%), Query Frame = 1
Query:  343 EEAPTSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMR-EDS 828
            EE     + E  +  KEA      T     E + +  + E   L+ KV  L  +L+    R+LR+ ADF+N+++R + ++ +        ++  +L  LDNFERA  Q++   E  + +    + +Y+QL+E +   GV  +E VG  FDP  H+A+M+ EDS
Sbjct:    2 EERNEQVVEEVKEEVKEAQVEEAVTSEDSEETVEE--KSEAALLQEKVDELQAKLTETEGRMLRLQADFENYKRRVQMDKQAAEKYRAQSLVSDILPALDNFERA-MQVEATDEQMKSLLQGMEMVYRQLLEAMTKEGVEAIEAVGKQFDPHEHQAVMQVEDS 161          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_CLOB8 (Protein grpE OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=grpE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.858e-14
Identity = 51/149 (34.23%), Postives = 82/149 (55.03%), Query Frame = 1
Query:  379 QSYKEALASNDDTKAAE--IEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGE-EXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIM 816
            Q   +A  +N+ +K A   IEA  +  ED   + E +   L EEL A + R+LR++A++DN+RKRT KE+  + ++A  +V++ ++ +LDN ERA     V  +G  E +    +   K   +    LGV  ++  G  FDP LH A+M
Sbjct:   29 QESNDAAETNEASKEASENIEAAEEDQEDLVKNQEEENKKLREELDATKDRLLRLTAEYDNYRKRTAKEKEGIYSDAYVDVLKEIVPILDNLERA-----VAADGSIEDLKKGIEMTIKGCKDSFAKLGVEEIDATGE-FDPNLHNAVM 171          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_METTH (Protein grpE OS=Methanobacterium thermoautotrophicum GN=grpE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.732e-14
Identity = 42/139 (30.22%), Postives = 72/139 (51.80%), Query Frame = 1
Query:  409 DDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMRED 825
            D     E +  L+   +   DLE ++    EE+    + + R+ ADFDN++K+ EK+ L ++ NA   ++ +LL V ++ ERA        E ++   +  + IY++  + L   G+  +   G  FDP LHEA+M ED
Sbjct:    8 DSRSQQECQKELEELRERLKDLENEIKKKEEEVREYTSHLQRLQADFDNYKKQMEKQELEIIKNANERLILKLLDVYEDLERA-------IENQDSSMDGLEVIYRKFRDTLTKEGLSEIPAEGEKFDPFLHEAVMVED 139          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_CLOP1 (Protein grpE OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=grpE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.732e-14
Identity = 50/136 (36.76%), Postives = 78/136 (57.35%), Query Frame = 1
Query:  412 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGE-EXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIM 816
            D K  + E L K+ ++E    + K   L  EL A + R+LRISA+++N+RKRT+KE+  + T+A  +V+ ++L VLDN ERA     +  +G  E +    +   +Q  + L  L V  + T  N FDP LH+A+M
Sbjct:   44 DEKVIDFEEL-KALKEENTMFKSKTKKLENELEALKDRLLRISAEYENYRKRTDKEKERIYTDACEDVLIKMLPVLDNLERA-----LAVDGTVEDLKKGVEMTVRQFEDALEKLQVEEIST-ENGFDPELHQAMM 172          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_CLOTE (Protein grpE OS=Clostridium tetani GN=grpE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.366e-14
Identity = 52/154 (33.77%), Postives = 87/154 (56.49%), Query Frame = 1
Query:  388 KEALASNDDTKAAEIEALLKSFEDEKID-----LERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGE-EXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMR-EDS 828
            +E L  ++  +  E E L KS E+ +++     L+ +   L+ E+ A + R+LR + ++DN+RKRT++E+  L  +A  +V++ +L VLDN ERA     +  +G+ E +        KQ  +   +LGV  + T  N FDP LH+A+M  EDS
Sbjct:   22 EEELEESEVNEDKEFEELDKSEEENEVEELISTLKDENEKLNNEMEALKDRLLRTTGEYDNYRKRTDREKEGLYASACEDVLKEILPVLDNLERA-----ILAKGDIEDLKKGVDMTLKQFKDSFKNLGVEEIST-ENGFDPNLHDAVMHVEDS 169          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_STACT (Protein grpE OS=Staphylococcus carnosus (strain TM300) GN=grpE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.314e-14
Identity = 38/119 (31.93%), Postives = 70/119 (58.82%), Query Frame = 1
Query:  469 DLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMRED 825
            D E+++  L EE++ +  + LR+ A+F+N+++R + E  +L T     V+  +L  +DN ERA  QI+ + E  + +    Q +Y+ L+  L   G+  +E VG  FDP  H+A+M+++
Sbjct:   48 DKEKEIQQLKEEVNEQEEKYLRLYAEFENYKRRIQNENQTLKTYQAQCVLTDILPTIDNIERA-LQIEGEDESFKSLQKGVQMVYESLLRALEENGLEKIEAVGQQFDPNFHQAVMQDE 165          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_CLOPS (Protein grpE OS=Clostridium perfringens (strain SM101 / Type A) GN=grpE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.314e-14
Identity = 49/136 (36.03%), Postives = 78/136 (57.35%), Query Frame = 1
Query:  412 DTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGE-EXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIM 816
            D K  + E L K+ ++E    + K   L  EL A + R+LRIS++++N+RKRT+KE+  + T+A  +V+ ++L VLDN ERA     +  +G  E +    +   +Q  + L  L V  + T  N FDP LH+A+M
Sbjct:   44 DEKVIDFEEL-KALKEENTMFKSKTKKLENELEALKDRLLRISSEYENYRKRTDKEKERIYTDACEDVLIKMLPVLDNLERA-----LAVDGTVEDLKKGVEMTVRQFEDALEKLQVEEIST-ENGFDPELHQAMM 172          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_BACLD (Protein grpE OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=grpE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.314e-14
Identity = 44/143 (30.77%), Postives = 79/143 (55.24%), Query Frame = 1
Query:  391 EALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMR 819
            EA  +  +  AAE +A  +  + E   LE+++  L E L  +  ++LR+ ADF+N+++R   +  +        ++  LL  LDNFERA  QI    E  + +    + +++Q++E L + GV  + +VG  FDP +H+A+M+
Sbjct:   20 EAETAEAEQTAAEADAPAEETQTEM--LEKQLKELQERLEEKENKLLRVQADFENYKRRARLDLEAAEKYRSQRIISDLLPALDNFERA-LQIDPDNEQTKSLLQGMEMVHRQILEALKNEGVEQIPSVGEQFDPNMHQAVMQ 159          
The following BLAST results are available for this feature:
BLAST of FC876499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GRPE_CLOAB1.675e-1431.45Protein grpE OS=Clostridium acetobutylicum GN=grpE... [more]
GRPE_BRECH2.188e-1430.77Protein grpE (Fragment) OS=Brevibacillus choshinen... [more]
GRPE_BACC72.188e-1430.67Protein grpE OS=Bacillus cereus (strain AH187) GN=... [more]
GRPE_CLOB82.858e-1434.23Protein grpE OS=Clostridium beijerinckii (strain A... [more]
GRPE_METTH3.732e-1430.22Protein grpE OS=Methanobacterium thermoautotrophic... [more]
GRPE_CLOP13.732e-1436.76Protein grpE OS=Clostridium perfringens (strain AT... [more]
GRPE_CLOTE6.366e-1433.77Protein grpE OS=Clostridium tetani GN=grpE PE=3 SV... [more]
GRPE_STACT8.314e-1431.93Protein grpE OS=Staphylococcus carnosus (strain TM... [more]
GRPE_CLOPS8.314e-1436.03Protein grpE OS=Clostridium perfringens (strain SM... [more]
GRPE_BACLD8.314e-1430.77Protein grpE OS=Bacillus licheniformis (strain DSM... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CE04RM1 EHR Citrus clementina cDNA clone KN0AAN2CE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876499 ID=FC876499; Name=FC876499; organism=Citrus clementina; type=EST; length=829bp
GCACGAGGCATAAAAACGCCGCCGTTTCACGCATCTTCTCTTCCCGCCAC
ACGTGCAGCCCCCATTTCCTTAAAATCTCCGAAACCCATCTGTATTTCCT
TCAGACAACGTCTAATAAGCACCAGCAGACTTTATCATCGGTCAAATTCT
CTCCGGTTCGTAAGTGTTCAGTCTCTCCGGTTCGTAAAGTTCTCTCCTTT
AGCTTCAACTGGAGAAACTGAAACCCAAGAGGAAATTCAGGAACCCCAAA
TTGAGGAATCTTCCGATGGTGCTGTTGGCATTGAAGATGGCACTAGTGAC
GATGATAGCTCTGGAGCTACTAGTGATGACACCTCAGATGCTGAGGAAGC
ACCTACTTCATTCATTATGGAAACACTCCAATCATACAAAGAAGCTTTGG
CCAGTAATGACGATACCAAAGCTGCTGAAATAGAGGCTTTATTAAAATCC
TTTGAAGATGAGAAAATTGATCTTGAGAGGAAAGTTGTTAACTTGTCTGA
AGAATTGTCAGCTGAGAGGGCTCGTATTCTTAGGATCAGTGCTGACTTTG
ACAATTTTCGTAAGAGAACGGAGAAGGAACGCCTTTCACTGGTAACAAAT
GCTCAAGGAGAAGTCATGGAGAGATTGTTGCAAGTTTTGGATAATTTTGA
GAGAGCTAAAACTCAAATTAAGGTGCAGACCGAGGGAGAGGAGNAAATAA
ACAACAGCTATCAGAGCATATATAAGCAATTAGTGGAAATCCTANGATCA
CTTGGTGTTGTTCCTGTGGAGACGGTTGGGAATCCTTTTGATCCATTGCT
TCACGAAGCAATTATGCGCGAGGATTCCA
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