FC876499

Overview
NameFC876499
Unique NameFC876499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length829
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_BACC0 (Protein grpE OS=Bacillus cereus (strain AH820) GN=grpE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.852e-13
Identity = 47/149 (31.54%), Postives = 82/149 (55.03%), Query Frame = 1
Query:  409 DDTKAAEIE-ALLKSFEDEKID-------LERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMR-EDS 828
            ++ K A++E A+     +E ++       L+ KV  L  +L+    R LR+ ADF+N+++R + ++ +        ++  +L  LDNFERA  Q++   E  + +    + +++QL+E L   GV  +E VG  FDP  H+AIM+ EDS
Sbjct:   10 EEVKEAQVEEAVTPENSEETVEEKSEAALLQEKVDELQAKLTETEGRTLRLQADFENYKRRVQMDKQAAEKYRAQSLVSDILPALDNFERA-MQVEATDEQTKSLLQGMEMVHRQLLEALNKEGVEVIEAVGKQFDPNEHQAIMQVEDS 157          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_BACAN (Protein grpE OS=Bacillus anthracis GN=grpE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.852e-13
Identity = 47/149 (31.54%), Postives = 82/149 (55.03%), Query Frame = 1
Query:  409 DDTKAAEIE-ALLKSFEDEKID-------LERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMR-EDS 828
            ++ K A++E A+     +E ++       L+ KV  L  +L+    R LR+ ADF+N+++R + ++ +        ++  +L  LDNFERA  Q++   E  + +    + +++QL+E L   GV  +E VG  FDP  H+AIM+ EDS
Sbjct:   10 EEVKEAQVEEAVTPENSEETVEEKSEAALLQEKVDELQAKLTETEGRTLRLQADFENYKRRVQMDKQAAEKYRAQSLVSDILPALDNFERA-MQVEATDEQTKSLLQGMEMVHRQLLEALNKEGVEVIEAVGKQFDPNEHQAIMQVEDS 157          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_EXIS2 (Protein grpE OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=grpE PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.419e-13
Identity = 43/142 (30.28%), Postives = 76/142 (53.52%), Query Frame = 1
Query:  403 SNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMREDS 828
            +   T+A  +E   +      +  E    +   +L+  +A  LR+ ADFDNF++R   E  +    +   ++E+LL ++DN +RA  QI+   E  + +    + + +QLVE L + GV+ +  VG  FDP LH+A+++E S
Sbjct:   16 TEQQTEAETVEVTEEEVVQADLVEEPAAPDFEAQLAEAKASELRLRADFDNFKRRNRIEAENRAKYSSQTIVEKLLPLVDNLDRA-LQIESDNEETKSVLAGVEMVKRQLVETLQNEGVIEIPAVGEAFDPNLHQAVVQEPS 156          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_BACSK (Protein grpE OS=Bacillus clausii (strain KSM-K16) GN=grpE PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.419e-13
Identity = 42/115 (36.52%), Postives = 69/115 (60.00%), Query Frame = 1
Query:  475 ERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMR 819
            E +V  L  EL+  + R+ R+ AD++NFR+RT++E+ +         +E+LL  LDNFERA   ++ + E  + +    + +Y+Q+ E L   GV P+ T G  FDP LH+A+M+
Sbjct:   44 EPEVHPLEIELNELKDRLARVRADYENFRRRTKEEKEAQAKYRAQGFIEKLLPALDNFERA-LLVEPKHEEAKQLLQGMEMVYRQVEEALKQEGVEPIPTEGELFDPHLHQAVMQ 157          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_BACA2 (Protein grpE OS=Bacillus amyloliquefaciens (strain FZB42) GN=grpE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.160e-13
Identity = 44/146 (30.14%), Postives = 80/146 (54.79%), Query Frame = 1
Query:  391 EALASNDDTKAAEIEALLKSFED---EKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMR 819
            EA    + T+ AE  A  +  E+   ++  L+ ++  L   L  +  ++LR+ ADF+N+++R+  E  +        V+  +L  LDNFERA  Q++ ++E  + +    + + +QL++ L   GV  +E VG  FDP LH+A+M+
Sbjct:   12 EAAEQEEVTEQAEQAASQEQHEETAGQEEALQHQIDELQGLLDEKENKLLRVQADFENYKRRSRLEMEAAQKYRSQNVVTEILPALDNFERA-LQVEAESEQTKSLLQGMEMVRRQLMDALEKEGVEAIEAVGQEFDPNLHQAVMQ 156          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_BACFR (Protein grpE OS=Bacteroides fragilis GN=grpE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.389e-13
Identity = 46/149 (30.87%), Postives = 80/149 (53.69%), Query Frame = 1
Query:  367 METLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAI 813
            ++ +Q   E  + N++      EA      +EK  LE+++     ++  ++ + LR+SA+FDN+RKRT KE+  L+ N   + ++ +L V+D+ ERA T ++  T+    +    + IY + + IL   GV  +ET   P D   HEAI
Sbjct:   16 VDDIQDTVEGQSQNEEAT----EATEPLTAEEK--LEKELKEAQAQIEDQKDKYLRLSAEFDNYRKRTVKEKAELILNGGEKSIKSILPVIDDMERALTTMETATD-VNAVKEGVELIYNKFLSILSQDGVKVIETKDQPLDTDYHEAI 157          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_BACFN (Protein grpE OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=grpE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.389e-13
Identity = 46/149 (30.87%), Postives = 80/149 (53.69%), Query Frame = 1
Query:  367 METLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAI 813
            ++ +Q   E  + N++      EA      +EK  LE+++     ++  ++ + LR+SA+FDN+RKRT KE+  L+ N   + ++ +L V+D+ ERA T ++  T+    +    + IY + + IL   GV  +ET   P D   HEAI
Sbjct:   16 VDDIQDTVEGQSQNEEAT----EATEPLTAEEK--LEKELKEAQAQIEDQKDKYLRLSAEFDNYRKRTVKEKAELILNGGEKSIKSILPVIDDMERALTTMETATD-VNAVKEGVELIYNKFLSILSQDGVKVIETKDQPLDTDYHEAI 157          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_PELPD (Protein grpE OS=Pelobacter propionicus (strain DSM 2379) GN=grpE PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.039e-13
Identity = 41/120 (34.17%), Postives = 64/120 (53.33%), Query Frame = 1
Query:  475 ERKVVNLSEELSAERA-------RILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAI 813
            E ++  L E+L+A+ A       R +R  AD +NFRKR+ +E+  L+      ++E +L V+DN ERA +       G   +    Q I+  L+  +   GV P+ET G PFDP  H+A+
Sbjct:   33 EERISRLEEQLAAKEAECRENWDRFVRERADLENFRKRSNREKEELLNYGTKSLLEEILPVVDNLERALSH--ANENGSTGLTEGVQMIHGLLLNAMKKFGVTPLETSGAPFDPSFHQAM 150          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_BACSU (Protein grpE OS=Bacillus subtilis GN=grpE PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.568e-12
Identity = 38/118 (32.20%), Postives = 67/118 (56.78%), Query Frame = 1
Query:  472 LERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMRED 825
            L+ ++  L   L  +  ++LR+ ADF+N+++R+  E  +        ++  LL  LD+FERA  Q++   E  + +    + +++QLVE L   GV  +E VG  FDP LH+A+M+ +
Sbjct:   38 LQNQINELQGLLEEKENKLLRVQADFENYKRRSRLEMEASQKYRSQNIVTDLLPALDSFERA-LQVEADNEQTKSLLQGMEMVHRQLVEALKKEGVEAIEAVGQEFDPNLHQAVMQAE 154          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_STAS1 (Protein grpE OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=grpE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.016e-11
Identity = 37/153 (24.18%), Postives = 83/153 (54.25%), Query Frame = 1
Query:  382 SYKEALASNDDTKAAEIEALLKSFEDEKID----LERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMREDS 828
            S  +++ +ND+T     + L +    E  +     + ++  L +++     + LR+ A+F+N+++R +KE  ++      +V+  +L  +DN ERA  QI  + E  + +    + +++ L+  L + G+  +ET G  FDP +H+A++++D+
Sbjct:   20 SQTDSVENNDETTETSQDNLQEDDSQEIAEDVDPKDEEIQQLKKDVQENEEKYLRLYAEFENYKRRIQKENQTMKAYKAQDVLNDILPTIDNIERA-LQIDGEDEQFKSLKKGVEMVHESLLNALKNNGLEKIETEGQQFDPNVHQAVVQDDN 171          
The following BLAST results are available for this feature:
BLAST of FC876499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GRPE_BACC01.852e-1331.54Protein grpE OS=Bacillus cereus (strain AH820) GN=... [more]
GRPE_BACAN1.852e-1331.54Protein grpE OS=Bacillus anthracis GN=grpE PE=3 SV... [more]
GRPE_EXIS22.419e-1330.28Protein grpE OS=Exiguobacterium sibiricum (strain ... [more]
GRPE_BACSK2.419e-1336.52Protein grpE OS=Bacillus clausii (strain KSM-K16) ... [more]
GRPE_BACA23.160e-1330.14Protein grpE OS=Bacillus amyloliquefaciens (strain... [more]
GRPE_BACFR5.389e-1330.87Protein grpE OS=Bacteroides fragilis GN=grpE PE=3 ... [more]
GRPE_BACFN5.389e-1330.87Protein grpE OS=Bacteroides fragilis (strain ATCC ... [more]
GRPE_PELPD7.039e-1334.17Protein grpE OS=Pelobacter propionicus (strain DSM... [more]
GRPE_BACSU1.568e-1232.20Protein grpE OS=Bacillus subtilis GN=grpE PE=1 SV=... [more]
GRPE_STAS11.016e-1124.18Protein grpE OS=Staphylococcus saprophyticus subsp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN2CE04RM1 EHR Citrus clementina cDNA clone KN0AAN2CE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876499 ID=FC876499; Name=FC876499; organism=Citrus clementina; type=EST; length=829bp
GCACGAGGCATAAAAACGCCGCCGTTTCACGCATCTTCTCTTCCCGCCAC
ACGTGCAGCCCCCATTTCCTTAAAATCTCCGAAACCCATCTGTATTTCCT
TCAGACAACGTCTAATAAGCACCAGCAGACTTTATCATCGGTCAAATTCT
CTCCGGTTCGTAAGTGTTCAGTCTCTCCGGTTCGTAAAGTTCTCTCCTTT
AGCTTCAACTGGAGAAACTGAAACCCAAGAGGAAATTCAGGAACCCCAAA
TTGAGGAATCTTCCGATGGTGCTGTTGGCATTGAAGATGGCACTAGTGAC
GATGATAGCTCTGGAGCTACTAGTGATGACACCTCAGATGCTGAGGAAGC
ACCTACTTCATTCATTATGGAAACACTCCAATCATACAAAGAAGCTTTGG
CCAGTAATGACGATACCAAAGCTGCTGAAATAGAGGCTTTATTAAAATCC
TTTGAAGATGAGAAAATTGATCTTGAGAGGAAAGTTGTTAACTTGTCTGA
AGAATTGTCAGCTGAGAGGGCTCGTATTCTTAGGATCAGTGCTGACTTTG
ACAATTTTCGTAAGAGAACGGAGAAGGAACGCCTTTCACTGGTAACAAAT
GCTCAAGGAGAAGTCATGGAGAGATTGTTGCAAGTTTTGGATAATTTTGA
GAGAGCTAAAACTCAAATTAAGGTGCAGACCGAGGGAGAGGAGNAAATAA
ACAACAGCTATCAGAGCATATATAAGCAATTAGTGGAAATCCTANGATCA
CTTGGTGTTGTTCCTGTGGAGACGGTTGGGAATCCTTTTGATCCATTGCT
TCACGAAGCAATTATGCGCGAGGATTCCA
back to top