FC876499

Overview
NameFC876499
Unique NameFC876499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length829
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_PORG3 (Protein grpE OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=grpE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.327e-11
Identity = 43/115 (37.39%), Postives = 67/115 (58.26%), Query Frame = 1
Query:  481 KVVNLSEELSAERARI----LRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAI 813
            KV +  EEL+A+ A +    LR+ A++DN+RKRT KE+  L+ N   +V+  LL V+D+FERA + +   +E    I    + IY + ++ L   GV  +ET   PFD  L +A+
Sbjct:   43 KVADPVEELTAQLAALNDTHLRLMAEYDNYRKRTLKEKSELIRNGGEKVLVDLLPVIDDFERALSNLGDMSE-PAAIKGGVELIYSKFMDYLQKQGVKKIETADLPFDADLCDAV 156          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_LACF3 (Protein grpE OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=grpE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.734e-11
Identity = 44/142 (30.99%), Postives = 77/142 (54.23%), Query Frame = 1
Query:  391 EALASNDDTKAAEIEALLKSFEDEKI-DLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAI 813
            E  A  + T A E  A  K+ E EK+ DL+++V  L+++L  ++ + LR  A+  N  KR +KE+  L+     ++ + +L VLDN +RA  +I+V+ E  + +    Q ++  L + L    +  VE +  PFDP   +A+
Sbjct:   19 EVKAKQEQTSAKEPAA--KAGETEKVADLQKQVEELTKQLDDQKDQNLRAQAEMQNMTKRFKKEQAQLLKYDGQDLAKGILPVLDNLKRA-LEIEVEDENGQQLKKGIQMVHDHLEKALADHDIKEVEALNQPFDPTTQQAV 157          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_CLOD6 (Protein grpE OS=Clostridium difficile (strain 630) GN=grpE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.734e-11
Identity = 46/164 (28.05%), Postives = 85/164 (51.83%), Query Frame = 1
Query:  343 EEAPTSFIMET-LQSYKEALASNDDTKAAEIEALLKSFEDEKI-DLERKVVN--LSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMRE 822
            EE  TS   E+  Q   E    N++ + +  +   K  +DE + D+  K+    L +EL     +  R+ A++ N+R+RT++E+ ++   A  +++  L+ V+D+ ERA   +    + E+ +      ++KQL++ L   GV  +E     FDP LH A+M+E
Sbjct:   12 EENDTSINQESETQVELEEEVVNEECETSSEKTDEKEVDDENVTDINSKLAEKKLQDELDELNDKYQRLQAEYANYRRRTQQEKETIGVFANEKIITELIPVIDSMERA---LDACEDKEDTMYKGISLVHKQLIDTLVKFGVEEIEAESKEFDPNLHLAVMQE 172          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_BACTN (Protein grpE OS=Bacteroides thetaiotaomicron GN=grpE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.734e-11
Identity = 36/114 (31.58%), Postives = 65/114 (57.02%), Query Frame = 1
Query:  472 LERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAI 813
            LE+++ +    +  ++ + LR+SA+FDN+RKRT KE+  L+ N   + +  +L V+D+FERA   ++   +  + +    + IY + + ++   GV  +ET   P D   HEAI
Sbjct:   43 LEKELEDAQAVIEEQKDKYLRLSAEFDNYRKRTMKEKAELILNGGEKSISSILPVIDDFERAIKTMET-AKDVKAVKEGVELIYNKFMAVMAQNGVKVIETKDQPLDTDYHEAI 155          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_THENN (Protein grpE OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=grpE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.957e-11
Identity = 40/125 (32.00%), Postives = 68/125 (54.40%), Query Frame = 1
Query:  454 EDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMREDS 828
            E EK DL ++   L E+         R+ A+++N+R+   +E+  L+ NA   ++ RL+ +LD+FERA      Q + EE      + IYK+L+  L   G+  ++ VG  FDP  +EA+ R ++
Sbjct:    3 EKEKKDLSQECEELKEKYRELEEYAKRLKAEYENYREEVAREKRELIKNANEYLISRLIPILDDFERALN----QKDHEESFYEGVKLIYKKLLNTLEKEGLSKIQ-VGETFDPFEYEAVERVET 122          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_STAHJ (Protein grpE OS=Staphylococcus haemolyticus (strain JCSC1435) GN=grpE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.957e-11
Identity = 41/143 (28.67%), Postives = 75/143 (52.45%), Query Frame = 1
Query:  400 ASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMREDS 828
            +SND +     E      +DE+I   +   N +EE      + LR+ A+F+N+++R +KE  +  T     V+  +L  +DN ERA  QI+   E  + +    Q +++ L+  L   G+  +E+ G  FDP  H+A++++D+
Sbjct:   41 SSNDSSNEESSEETAVDPKDEEIQQLQLKANENEE------KYLRLYAEFENYKRRIQKENETNKTYQSQRVLTDILPTIDNIERA-LQIEGDDESFKSLQKGVQMVHESLLRALKDNGLEEIESEGQAFDPNFHQAVVQDDN 176          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_PORGI (Protein grpE OS=Porphyromonas gingivalis GN=grpE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.957e-11
Identity = 42/115 (36.52%), Postives = 67/115 (58.26%), Query Frame = 1
Query:  481 KVVNLSEELSAERARI----LRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAI 813
            KV +  E+L+A+ A +    LR+ A++DN+RKRT KE+  L+ N   +V+  LL V+D+FERA + +   +E    I    + IY + ++ L   GV  +ET   PFD  L +A+
Sbjct:   43 KVADPVEQLTAQLAALNDTHLRLMAEYDNYRKRTLKEKSELIRNGGEKVLVDLLPVIDDFERALSNLGDMSE-PAAIKEGVELIYSKFMDYLQKQGVKKIETADLPFDADLCDAV 156          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_PARD8 (Protein grpE OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=grpE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.957e-11
Identity = 43/138 (31.16%), Postives = 68/138 (49.28%), Query Frame = 1
Query:  400 ASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAI 813
            A+  D  + E+EAL K + +         +N S          LR+ A+FDN+RKRT +E+  L+       ++ LL ++D+FERA   ++   E  E +      I+ + +  L   GV P+E +G PFD    EAI
Sbjct:   38 AAGSDNVSGEVEALQKKYNE---------LNDSH---------LRLMAEFDNYRKRTMREKADLIKTGGEGALKNLLPIIDDFERALQNVRA-AEDVEAVKEGVDLIFGKFMGYLSQQGVKPIEAIGKPFDTEEFEAI 156          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_ARCB4 (Protein grpE OS=Arcobacter butzleri (strain RM4018) GN=grpE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.957e-11
Identity = 46/150 (30.67%), Postives = 67/150 (44.67%), Query Frame = 1
Query:  388 KEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSI---YKQLVEILXSLGVVPVETVGNPFDPLLHEAIMREDS 828
            +E + + ++ K  E E   +S       LE KV  L  EL     + LR  ADF+N +KR EKE+   +  A  +  + LL  LD  E A    K   +  E +    + I    K  +       +  VET G  FDP +H A+M+ DS
Sbjct:   12 QETVETKEEIKTEEAEQKTES-------LEEKVARLESELKESEEKFLRAYADFENMKKRLEKEKYQAIDYASEKFAKDLLTPLDTLEMALNSAKADVDANELLEKLKEGIELTLKNFITTFEKHNITKVETDGE-FDPNVHNAVMQVDS 153          
BLAST of FC876499 vs. ExPASy Swiss-Prot
Match: GRPE_BACSH (Protein grpE OS=Bacillus sphaericus GN=grpE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.862e-11
Identity = 44/152 (28.95%), Postives = 80/152 (52.63%), Query Frame = 1
Query:  370 ETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSA-ERARILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEXINNSYQSIYKQLVEILXSLGVVPVETVGNPFDPLLHEAIMRE 822
            + +Q   +A  + ++ + +E++  ++   +E+   E  V  L  +L   E  R LR+ ADFDN R+R + +  +        ++  LL VLDNFERA  Q++  +E    I    + +Y+ L+E     G+  ++  G  FDP +H+A+M+E
Sbjct:   16 DLVQGDVQAETATEEVERSEVQEEIELSVEEQY--EANVAELQAKLDDDEENRHLRLRADFDNMRRRQQLDGEAAEKYRAQSLLSDLLPVLDNFERA-LQVETTSEETASIIKGIEMVYRSLLEATVFEGLQVIKAEGEQFDPNIHQAVMQE 164          
The following BLAST results are available for this feature:
BLAST of FC876499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GRPE_PORG31.327e-1137.39Protein grpE OS=Porphyromonas gingivalis (strain A... [more]
GRPE_LACF31.734e-1130.99Protein grpE OS=Lactobacillus fermentum (strain IF... [more]
GRPE_CLOD61.734e-1128.05Protein grpE OS=Clostridium difficile (strain 630)... [more]
GRPE_BACTN1.734e-1131.58Protein grpE OS=Bacteroides thetaiotaomicron GN=gr... [more]
GRPE_THENN2.957e-1132.00Protein grpE OS=Thermotoga neapolitana (strain ATC... [more]
GRPE_STAHJ2.957e-1128.67Protein grpE OS=Staphylococcus haemolyticus (strai... [more]
GRPE_PORGI2.957e-1136.52Protein grpE OS=Porphyromonas gingivalis GN=grpE P... [more]
GRPE_PARD82.957e-1131.16Protein grpE OS=Parabacteroides distasonis (strain... [more]
GRPE_ARCB42.957e-1130.67Protein grpE OS=Arcobacter butzleri (strain RM4018... [more]
GRPE_BACSH3.862e-1128.95Protein grpE OS=Bacillus sphaericus GN=grpE PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CE04RM1 EHR Citrus clementina cDNA clone KN0AAN2CE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876499 ID=FC876499; Name=FC876499; organism=Citrus clementina; type=EST; length=829bp
GCACGAGGCATAAAAACGCCGCCGTTTCACGCATCTTCTCTTCCCGCCAC
ACGTGCAGCCCCCATTTCCTTAAAATCTCCGAAACCCATCTGTATTTCCT
TCAGACAACGTCTAATAAGCACCAGCAGACTTTATCATCGGTCAAATTCT
CTCCGGTTCGTAAGTGTTCAGTCTCTCCGGTTCGTAAAGTTCTCTCCTTT
AGCTTCAACTGGAGAAACTGAAACCCAAGAGGAAATTCAGGAACCCCAAA
TTGAGGAATCTTCCGATGGTGCTGTTGGCATTGAAGATGGCACTAGTGAC
GATGATAGCTCTGGAGCTACTAGTGATGACACCTCAGATGCTGAGGAAGC
ACCTACTTCATTCATTATGGAAACACTCCAATCATACAAAGAAGCTTTGG
CCAGTAATGACGATACCAAAGCTGCTGAAATAGAGGCTTTATTAAAATCC
TTTGAAGATGAGAAAATTGATCTTGAGAGGAAAGTTGTTAACTTGTCTGA
AGAATTGTCAGCTGAGAGGGCTCGTATTCTTAGGATCAGTGCTGACTTTG
ACAATTTTCGTAAGAGAACGGAGAAGGAACGCCTTTCACTGGTAACAAAT
GCTCAAGGAGAAGTCATGGAGAGATTGTTGCAAGTTTTGGATAATTTTGA
GAGAGCTAAAACTCAAATTAAGGTGCAGACCGAGGGAGAGGAGNAAATAA
ACAACAGCTATCAGAGCATATATAAGCAATTAGTGGAAATCCTANGATCA
CTTGGTGTTGTTCCTGTGGAGACGGTTGGGAATCCTTTTGATCCATTGCT
TCACGAAGCAATTATGCGCGAGGATTCCA
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