FC876511

Overview
NameFC876511
Unique NameFC876511
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876511 vs. ExPASy Swiss-Prot
Match: TLC2_CHLMU (ADP,ATP carrier protein 2 OS=Chlamydia muridarum GN=tlcB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.567e-23
Identity = 60/149 (40.27%), Postives = 92/149 (61.74%), Query Frame = 2
Query:   77 KFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKF-GMTPLLAAVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGGILL------VIVLAWLGAARSLDT 502
            ++GW V A ITP  +L+TG  FF  +         L  F G +PL+   ++G +QN+FS++ K++ FD  KEMA+IPL++D K  GKAAID V + +GKSGG+L+ Q +++ F S+A+    +  +LL      + V+AWLG   S+ T
Sbjct:  356 RWGWTVGALITPLTMLITGGLFFGAIYAVKGDAMILGGFLGFSPLVLTAWLGGVQNVFSRAIKFTYFDQTKEMAFIPLEDDEKDYGKAAIDGVISRVGKSGGSLVYQALLIIFSSVADCMNAITIVLLLALGGWIWVVAWLGKEYSVRT 504          
BLAST of FC876511 vs. ExPASy Swiss-Prot
Match: TLCB_RICFE (ADP,ATP carrier protein 2 OS=Rickettsia felis GN=tlcB PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.577e-23
Identity = 63/177 (35.59%), Postives = 95/177 (53.67%), Query Frame = 2
Query:    2 HEGDFSTATGIATFTMMLLSQFVFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFGMT-PLLAAVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGGILL----VIVLAWLGAARSLDTQFTAL 517
            + G+    TG+ T     L   +    GW   A ITP ++   GV FFS  +F + L   +   G + PL+  V++G + ++ SKS KYSLFD  KEM YIPLD + K KGKAA+DV+   +GKS GA+IQ      F +  ++   + G+L+    ++ L WL   + L  Q+  +
Sbjct:  330 YHGEVFFWTGVLTLVSAFLGSSLIRICGWFWGAIITPIMMFGAGVMFFSFTVFENHLENIVNTLGYSLPLVVIVFIGGLWHVLSKSVKYSLFDATKEMVYIPLDSEMKTKGKAAVDVMGTKIGKSIGAIIQFISFSIFPNAVHND--IAGLLMFSFVIVCLLWLYGVKVLSEQYNKM 504          
BLAST of FC876511 vs. ExPASy Swiss-Prot
Match: TLCB_RICCN (ADP,ATP carrier protein 2 OS=Rickettsia conorii GN=tlcB PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.577e-23
Identity = 64/171 (37.43%), Postives = 93/171 (54.39%), Query Frame = 2
Query:   26 TGIATFTMMLLSQFVFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFGMT-PLLAAVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGGIL----LVIVLAWLGAARSLDTQFTALRQ 523
            TGI T     L   +    GW   A ITP ++   GV FFS  +F + LG  +   G + PL+  V++G + ++ SKS KYSLFD  KEM YIPLD + K KGKAA+DV+   +GKS GA+IQ      F +  ++   + G+L    +++ L WL   + L   +  + Q
Sbjct:  338 TGILTLVSAFLGSSLIRICGWFWGAIITPIMMFGAGVMFFSFTVFENHLGNIVNTLGYSAPLVVIVFIGGLWHVLSKSVKYSLFDATKEMVYIPLDSEMKTKGKAAVDVMGAKIGKSIGAIIQFISFSIFPNAIHND--IAGLLMFSFIIVCLLWLYGVKVLSKYYNKMIQ 506          
BLAST of FC876511 vs. ExPASy Swiss-Prot
Match: TLCB_RICBR (ADP,ATP carrier protein 2 OS=Rickettsia bellii (strain RML369-C) GN=tlcB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.257e-22
Identity = 62/169 (36.69%), Postives = 91/169 (53.85%), Query Frame = 2
Query:   26 TGIATFTMMLLSQFVFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFGMT-PLLAAVYVGAMQNIFSKSAKYSLFDPCKEMAYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGGIL----LVIVLAWLGAARSLDTQFTAL 517
            TG+ T     L   +    GW   A ITP ++   GV FFS  +F + L   +   G + PL+  V++G + ++ SKS KYSLFD  KEM YIPLD + K KGKAA+DV+   +GKS GA+IQ      F +  ++   + G+L    +++ L WL   + L   +  L
Sbjct:  338 TGVLTLVSAFLGSNLIRLCGWFWGAIITPIMMFGAGVMFFSFTVFENHLKNIIDTLGYSSPLIVIVFIGGLWHVLSKSVKYSLFDATKEMVYIPLDSEMKTKGKAAVDVMGTKIGKSIGAIIQFISFSIFPNAVHND--IAGLLMFSFIIVCLIWLYGVKVLAEYYNKL 504          
The following BLAST results are available for this feature:
BLAST of FC876511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
TLC2_CHLMU6.567e-2340.27ADP,ATP carrier protein 2 OS=Chlamydia muridarum G... [more]
TLCB_RICFE8.577e-2335.59ADP,ATP carrier protein 2 OS=Rickettsia felis GN=t... [more]
TLCB_RICCN8.577e-2337.43ADP,ATP carrier protein 2 OS=Rickettsia conorii GN... [more]
TLCB_RICBR4.257e-2236.69ADP,ATP carrier protein 2 OS=Rickettsia bellii (st... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CF06RM1 EHR Citrus clementina cDNA clone KN0AAN2CF06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876511 ID=FC876511; Name=FC876511; organism=Citrus clementina; type=EST; length=663bp
GCACGAGGGAGACTTCTCAACAGCTACTGGAATAGCAACATTCACGATGA
TGCTTCTAAGTCAATTTGTATTTGATAAATTTGGATGGGGAGTTGCTGCG
AAGATCACACCCACAGTCCTCCTGCTTACAGGAGTTGGTTTCTTTTCTCT
ACTATTATTTGGGGATCCTCTGGGACCTGCTCTTGCGAAGTTCGGAATGA
CTCCTCTTCTTGCTGCTGTATATGTGGGTGCCATGCAAAATATTTTCAGT
AAGAGTGCCAAGTACAGCTTGTTTGATCCTTGCAAAGAAATGGCCTACAT
TCCATTAGATGAAGACACCAAGGTTAAAGGGAAGGCAGCCATCGATGTTG
TGTGCAACCCGTTGGGGAAATCTGGAGGAGCTCTTATTCAGCAGTTTATG
ATATTAACCTTTGGGTCCCTTGCGAATTCAACTCCTTATCTTGGGGGGAT
ACTTTTGGTGATTGTTCTTGCATGGTTAGGAGCAGCCAGGTCTTTAGATA
CCCAATTTACAGCTTTGCGTCAGGAAGAAGAGCTTGAGAAGGAGATGGAA
AGAGCTGCTGTTAAGATCCCAGTTGTCTCTGAAAATGAAGGCGGGAATGG
TACTCTTCCAGGTGGATCAGCTTTGAATGCAGCAGGTGAGACACCCAGTG
AAGCATCTAGTCC
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