FC876525

Overview
NameFC876525
Unique NameFC876525
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876525 vs. ExPASy Swiss-Prot
Match: VA712_ARATH (Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.745e-12
Identity = 36/116 (31.03%), Postives = 61/116 (52.59%), Query Frame = -1
Query:  375 AVANCLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMXXXXXXXXXXXXXXXXXXLSVCHG 722
            A A  +N EF   L + ++Y  + P     ++++K ++++V+ VM+ENI+ +LDRGE++ELLVDKT N++     FR+Q  +    +W +N                      CHG
Sbjct:   98 AQAYAMNDEFSRVLNQQIEYYSNDPNA-DTISRIKGEMNQVRDVMIENIDNILDRGERLELLVDKTANMQGNTFRFRKQTRRFNNTVWWRNCKLTLLLILVLLVIIYIGVAFACHG 212          
BLAST of FC876525 vs. ExPASy Swiss-Prot
Match: VAMP7_CHICK (Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.035e-11
Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = -1
Query:  447 AVANCLNKEFGSKLKEHMQYCVDHPEE--ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNM 722
            A+   +N EF S L   ++Y   H E     ++A+ +AQV E+KG+M+ NI+ V  RGEK+ELL+DKTENL   +  F+     + R M ++N+
Sbjct:   97 ALPYAMNSEFSSVLAAQLKY---HSESKGTDQVAETQAQVDELKGIMVRNIDLVAQRGEKLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNL 187          
BLAST of FC876525 vs. ExPASy Swiss-Prot
Match: VAM7A_DICDI (Vesicle-associated membrane protein 7A OS=Dictyostelium discoideum GN=vamp7A PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 35/78 (44.87%), Postives = 53/78 (67.95%), Query Frame = -1
Query:  450 LKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQN 683
            L+E M+Y   +P+  +K+  V  QVSE KG + + IEK + RGEKIE++VDKTE L+S++  F+     ++RK+W QN
Sbjct:  112 LEERMKY-YSNPKS-NKMNLVMDQVSEAKGALTDAIEKTIHRGEKIEIIVDKTERLQSESFVFKSNSVALKRKLWWQN 187          
BLAST of FC876525 vs. ExPASy Swiss-Prot
Match: VAMP7_RAT (Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11
Identity = 32/92 (34.78%), Postives = 58/92 (63.04%), Query Frame = -1
Query:  447 AVANCLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNM 722
            A+   +N EF S L   +++  ++ + + ++ + +AQV E+KG+M+ NI+ V  RGE++ELL+DKTENL   +  F+     + R M ++N+
Sbjct:   97 ALPYAMNSEFSSVLAAQLKHHSEN-QSLDRVTETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCVKNV 187          
The following BLAST results are available for this feature:
BLAST of FC876525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
VA712_ARATH2.745e-1231.03Vesicle-associated membrane protein 712 OS=Arabido... [more]
VAMP7_CHICK3.035e-1139.36Vesicle-associated membrane protein 7 OS=Gallus ga... [more]
VAM7A_DICDI6.762e-1144.87Vesicle-associated membrane protein 7A OS=Dictyost... [more]
VAMP7_RAT8.832e-1134.78Vesicle-associated membrane protein 7 OS=Rattus no... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2CG10RM1 EHR Citrus clementina cDNA clone KN0AAN2CG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876525 ID=FC876525; Name=FC876525; organism=Citrus clementina; type=EST; length=722bp
GCACGAGGCTCGAGTTTTTTTTTTTTTTTTTTTTCTGCAGGTATCCAACT
ATTGTTCCATTACATCTTAAACTAAAATCCACATAAAGCAGCAGGCAGCA
TAAGACAACAGCAGGCAGCATAAAATATTTATCTATTTCGAGGAGTTCAA
GCATATAACCTATACAAGCAATCGAAAAGATACAAATTCATTCCCTTGCC
AAGGGGCAAGTAAGGGCATGATGACCTAAAAGAGGGGAAAAAGAAAACAT
AAACAAAAACAAGCGTGAGAGATGCAAGGATCAAAAGATGTGGCCAATGT
ACCAAGTCGACCATGTCAGCGGGACAGCAAAGCACAGTTTCCAGGGACTT
TCCAAGACCAAATCAACATTTGAAGCCATGGCAAACTGACAGAACGATGA
TAAGGATCAATGCGATGATGATACCCAAAACGATCAATTTAATCTTCATA
TTCTGGATCCACATCTTCCTTCTCATCTTCGTCCCCTGTTGTCGGAAATC
TTGTGCCTGTGACCGAAGGTTCTCAGTTTTGTCAACCAGCAGCTCAATCT
TCTCACCACGATCAAGAACCTTCTCAATATTTTCCATCATAACCCCCTTG
ACTTCAGAAACCTGAGCTTTGACTTTGGCAAGCTTGCTGATCTCTTCAGG
ATGATCCACACAATACTGCATGTGCTCCTTTAGTTTAGACCCAAACTCTT
TGTTCAGGCAATTTGCAACAGC
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