FC876606

Overview
NameFC876606
Unique NameFC876606
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: DDX50_MOUSE (ATP-dependent RNA helicase DDX50 OS=Mus musculus GN=Ddx50 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.184e-16
Identity = 46/98 (46.94%), Postives = 59/98 (60.20%), Query Frame = 1
Query:  397 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDF 690
            A S F IS    + LK +G+  LFPIQ  TF  V +G DL+ +ARTG GKT +F +P++E L        K     R+P VLVL PT+ELA QV +DF
Sbjct:  135 AFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDF 228          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: DDX50_HUMAN (ATP-dependent RNA helicase DDX50 OS=Homo sapiens GN=DDX50 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.158e-16
Identity = 46/98 (46.94%), Postives = 59/98 (60.20%), Query Frame = 1
Query:  397 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDF 690
            A S F IS    + LK +G+  LFPIQ  TF  V +G DL+ +ARTG GKT +F +P++E L        K     R+P VLVL PT+ELA QV +DF
Sbjct:  138 AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDF 231          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RH3_ARATH (DEAD-box ATP-dependent RNA helicase 3 OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.597e-15
Identity = 47/113 (41.59%), Postives = 62/113 (54.87%), Query Frame = 1
Query:  397 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFD----------VYGG 705
            A+S+  +   L E L+ +GI  LFPIQ       L G D++ RA+TG GKTLAF +PI++ LT      +     GR P  LVL PT+ELAKQV ++            VYGG
Sbjct:  103 AISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGG 215          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RH3_ORYSJ (DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.282e-14
Identity = 48/113 (42.48%), Postives = 63/113 (55.75%), Query Frame = 1
Query:  397 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFD----------VYGG 705
            A++R  +   L   L+ +GI  LFPIQ       LDG DL+ RA+TG GKTLAF +P+++ L       S +   GR P VLVL PT+ELAKQV ++            VYGG
Sbjct:  105 AIARLGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIKQLMEEDDGRSVRR--GRIPRVLVLAPTRELAKQVEKEIKESAPKLSTVCVYGG 215          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_XANOR (ATP-dependent RNA helicase rhlB OS=Xanthomonas oryzae pv. oryzae GN=rhlB PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.892e-14
Identity = 43/105 (40.95%), Postives = 61/105 (58.10%), Query Frame = 1
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   L   L+S G     PIQA+T  + L G D+ G+A+TG GKTLAF++ ++  L N P  A +K      P  L+L PT+ELA Q+H+D   +G  +GL
Sbjct:   12 SSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLNRPALADRKP---EDPRALILAPTRELAIQIHKDAVKFGADLGL 113          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SODGM (ATP-dependent RNA helicase rhlB OS=Sodalis glossinidius (strain morsitans) GN=rhlB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.670e-14
Identity = 43/105 (40.95%), Postives = 58/105 (55.24%), Query Frame = 1
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +  P+ E L SKG  +  PIQA+T    L G D+ G+A+TG GKTLAF+      L   P    ++T   RA   L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFALYPPIVEVLDSKGFNNCTPIQALTLPTTLAGKDVAGQAQTGTGKTLAFLTATFHHLLTHPAAEGRQTNQPRA---LIMAPTRELAVQIHSDAEPLAQATGL 113          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_PECCP (ATP-dependent RNA helicase rhlB OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rhlB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.931e-13
Identity = 41/105 (39.05%), Postives = 59/105 (56.19%), Query Frame = 1
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+SKG  +  PIQA+   + L G D+ G+A+TG GKTLAF+      L + P  A ++T   RA   L++ PT+ELA Q+H D +      GL
Sbjct:   12 SDFALHPQVIEALESKGFHNCTPIQALALPLALSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPANAERQTNQPRA---LIMAPTRELAVQIHSDAEALSHLTGL 113          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_XANCP (ATP-dependent RNA helicase rhlB OS=Xanthomonas campestris pv. campestris GN=rhlB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13
Identity = 42/105 (40.00%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   L   L+S G     PIQA+T  + L G D+ G+A+TG GKTLAF++ ++  L   P  A +K      P  L+L PT+ELA Q+H+D   +G  +GL
Sbjct:   12 SSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKP---EDPRALILAPTRELAIQIHKDAVKFGADLGL 113          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_XANCB (ATP-dependent RNA helicase rhlB OS=Xanthomonas campestris pv. campestris (strain B100) GN=rhlB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13
Identity = 42/105 (40.00%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   L   L+S G     PIQA+T  + L G D+ G+A+TG GKTLAF++ ++  L   P  A +K      P  L+L PT+ELA Q+H+D   +G  +GL
Sbjct:   12 SSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKP---EDPRALILAPTRELAIQIHKDAVKFGADLGL 113          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_XANC8 (ATP-dependent RNA helicase rhlB OS=Xanthomonas campestris pv. campestris (strain 8004) GN=rhlB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13
Identity = 42/105 (40.00%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   L   L+S G     PIQA+T  + L G D+ G+A+TG GKTLAF++ ++  L   P  A +K      P  L+L PT+ELA Q+H+D   +G  +GL
Sbjct:   12 SSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKP---EDPRALILAPTRELAIQIHKDAVKFGADLGL 113          
The following BLAST results are available for this feature:
BLAST of FC876606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
DDX50_MOUSE3.184e-1646.94ATP-dependent RNA helicase DDX50 OS=Mus musculus G... [more]
DDX50_HUMAN4.158e-1646.94ATP-dependent RNA helicase DDX50 OS=Homo sapiens G... [more]
RH3_ARATH4.597e-1541.59DEAD-box ATP-dependent RNA helicase 3 OS=Arabidops... [more]
RH3_ORYSJ2.282e-1442.48DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sat... [more]
RHLB_XANOR3.892e-1440.95ATP-dependent RNA helicase rhlB OS=Xanthomonas ory... [more]
RHLB_SODGM8.670e-1440.95ATP-dependent RNA helicase rhlB OS=Sodalis glossin... [more]
RHLB_PECCP1.931e-1339.05ATP-dependent RNA helicase rhlB OS=Pectobacterium ... [more]
RHLB_XANCP4.303e-1340.00ATP-dependent RNA helicase rhlB OS=Xanthomonas cam... [more]
RHLB_XANCB4.303e-1340.00ATP-dependent RNA helicase rhlB OS=Xanthomonas cam... [more]
RHLB_XANC84.303e-1340.00ATP-dependent RNA helicase rhlB OS=Xanthomonas cam... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1AF08RM1 EHR Citrus clementina cDNA clone KN0AAN1AF08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876606 ID=FC876606; Name=FC876606; organism=Citrus clementina; type=EST; length=728bp
GCACGAGGAGACGCCCTCTGCTGTTTCTTTGTATCTCATTTTAATTTTTG
TAACTTAACATAACCATTCATGCCTTCGATCGCTTTGTTTGACGGAAAAG
AAGTGAAAGACGAGAAGAAGATGAATAAGAAAATGGCTCTCAAGGACTTC
GAAGAAACGGAGGCGGCGTTAACTGAGAAGAGTTCGGATAAGAAGAAGAG
CAAGAAGAAGGAGAGTAGTAAGAAGCGGAAGGAATCGGAGATTGAGGAGG
AGGAAGAGAGAAGCGAAACGAGCTCGGAGTTAGGCGAGCCGGTGAATTTG
AAATCGGAGAAGGAGAAAAAGAAGAAGAAGAAAGCGAAAGTTGAGCCTGA
GGCTGGAGTGGAAGAGCAGGAGAGGGGTGAAAGCGAACATCCGAATGCGG
TTTCGAGGTTTAGAATATCGGTGCCATTAAGGGAAAAGCTCAAGTCCAAG
GGGATTGAGTCTTTGTTTCCTATTCAAGCTATGACTTTTGATATGGTTCT
TGATGGCTCTGATTTAGTCGGACGTGCACGGACCGGTCAGGGTAAAACTT
TAGCCTTTGTGTTGCCAATTTTAGAGTCTCTAACGAATGGGCCAACAAAA
GCGTCCAAGAAGACTGGATATGGCAGGGCTCCAAGTGTTTTGGTACTTTT
GCCTACTAAGGAATTGGCCAAACAGGTTCATGAGGACTTTGATGTCTATG
GCGGGGCAGTGGGACTGACCTCATGTTG
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