FC876606
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: DDX50_MOUSE (ATP-dependent RNA helicase DDX50 OS=Mus musculus GN=Ddx50 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.184e-16 Identity = 46/98 (46.94%), Postives = 59/98 (60.20%), Query Frame = 1 Query: 397 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDF 690 A S F IS + LK +G+ LFPIQ TF V +G DL+ +ARTG GKT +F +P++E L K R+P VLVL PT+ELA QV +DF Sbjct: 135 AFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDF 228
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: DDX50_HUMAN (ATP-dependent RNA helicase DDX50 OS=Homo sapiens GN=DDX50 PE=1 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.158e-16 Identity = 46/98 (46.94%), Postives = 59/98 (60.20%), Query Frame = 1 Query: 397 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDF 690 A S F IS + LK +G+ LFPIQ TF V +G DL+ +ARTG GKT +F +P++E L K R+P VLVL PT+ELA QV +DF Sbjct: 138 AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDF 231
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RH3_ARATH (DEAD-box ATP-dependent RNA helicase 3 OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2) HSP 1 Score: 81.6481 bits (200), Expect = 4.597e-15 Identity = 47/113 (41.59%), Postives = 62/113 (54.87%), Query Frame = 1 Query: 397 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFD----------VYGG 705 A+S+ + L E L+ +GI LFPIQ L G D++ RA+TG GKTLAF +PI++ LT + GR P LVL PT+ELAKQV ++ VYGG Sbjct: 103 AISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGG 215
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RH3_ORYSJ (DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 2.282e-14 Identity = 48/113 (42.48%), Postives = 63/113 (55.75%), Query Frame = 1 Query: 397 AVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFD----------VYGG 705 A++R + L L+ +GI LFPIQ LDG DL+ RA+TG GKTLAF +P+++ L S + GR P VLVL PT+ELAKQV ++ VYGG Sbjct: 105 AIARLGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIKQLMEEDDGRSVRR--GRIPRVLVLAPTRELAKQVEKEIKESAPKLSTVCVYGG 215
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_XANOR (ATP-dependent RNA helicase rhlB OS=Xanthomonas oryzae pv. oryzae GN=rhlB PE=3 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 3.892e-14 Identity = 43/105 (40.95%), Postives = 61/105 (58.10%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + L L+S G PIQA+T + L G D+ G+A+TG GKTLAF++ ++ L N P A +K P L+L PT+ELA Q+H+D +G +GL Sbjct: 12 SSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLNRPALADRKP---EDPRALILAPTRELAIQIHKDAVKFGADLGL 113
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SODGM (ATP-dependent RNA helicase rhlB OS=Sodalis glossinidius (strain morsitans) GN=rhlB PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.670e-14 Identity = 43/105 (40.95%), Postives = 58/105 (55.24%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + P+ E L SKG + PIQA+T L G D+ G+A+TG GKTLAF+ L P ++T RA L++ PT+ELA Q+H D + A GL Sbjct: 12 SDFALYPPIVEVLDSKGFNNCTPIQALTLPTTLAGKDVAGQAQTGTGKTLAFLTATFHHLLTHPAAEGRQTNQPRA---LIMAPTRELAVQIHSDAEPLAQATGL 113
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_PECCP (ATP-dependent RNA helicase rhlB OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rhlB PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.931e-13 Identity = 41/105 (39.05%), Postives = 59/105 (56.19%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + + E L+SKG + PIQA+ + L G D+ G+A+TG GKTLAF+ L + P A ++T RA L++ PT+ELA Q+H D + GL Sbjct: 12 SDFALHPQVIEALESKGFHNCTPIQALALPLALSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPANAERQTNQPRA---LIMAPTRELAVQIHSDAEALSHLTGL 113
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_XANCP (ATP-dependent RNA helicase rhlB OS=Xanthomonas campestris pv. campestris GN=rhlB PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13 Identity = 42/105 (40.00%), Postives = 60/105 (57.14%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + L L+S G PIQA+T + L G D+ G+A+TG GKTLAF++ ++ L P A +K P L+L PT+ELA Q+H+D +G +GL Sbjct: 12 SSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKP---EDPRALILAPTRELAIQIHKDAVKFGADLGL 113
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_XANCB (ATP-dependent RNA helicase rhlB OS=Xanthomonas campestris pv. campestris (strain B100) GN=rhlB PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13 Identity = 42/105 (40.00%), Postives = 60/105 (57.14%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + L L+S G PIQA+T + L G D+ G+A+TG GKTLAF++ ++ L P A +K P L+L PT+ELA Q+H+D +G +GL Sbjct: 12 SSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKP---EDPRALILAPTRELAIQIHKDAVKFGADLGL 113
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_XANC8 (ATP-dependent RNA helicase rhlB OS=Xanthomonas campestris pv. campestris (strain 8004) GN=rhlB PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13 Identity = 42/105 (40.00%), Postives = 60/105 (57.14%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + L L+S G PIQA+T + L G D+ G+A+TG GKTLAF++ ++ L P A +K P L+L PT+ELA Q+H+D +G +GL Sbjct: 12 SSFDLHPALVAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKP---EDPRALILAPTRELAIQIHKDAVKFGADLGL 113 The following BLAST results are available for this feature:
BLAST of FC876606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 99
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876606 ID=FC876606; Name=FC876606; organism=Citrus clementina; type=EST; length=728bpback to top |