FC876606
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_XANC5 (ATP-dependent RNA helicase rhlB OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=rhlB PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13 Identity = 42/105 (40.00%), Postives = 60/105 (57.14%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + L L+S G PIQA+T + L G D+ G+A+TG GKTLAF++ ++ L P A +K P L+L PT+ELA Q+H+D +G +GL Sbjct: 12 SSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKP---EDPRALILAPTRELAIQIHKDAVKFGADLGL 113
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_XANAC (ATP-dependent RNA helicase rhlB OS=Xanthomonas axonopodis pv. citri GN=rhlB PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13 Identity = 42/105 (40.00%), Postives = 60/105 (57.14%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + L L+S G PIQA+T + L G D+ G+A+TG GKTLAF++ ++ L P A +K P L+L PT+ELA Q+H+D +G +GL Sbjct: 12 SSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKP---EDPRALILAPTRELAIQIHKDAVKFGADLGL 113
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_ERWCT (ATP-dependent RNA helicase rhlB OS=Erwinia carotovora subsp. atroseptica GN=rhlB PE=3 SV=3) HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13 Identity = 41/105 (39.05%), Postives = 58/105 (55.24%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + + E L+SKG PIQA+ + L G D+ G+A+TG GKTLAF+ L + P A ++T RA L++ PT+ELA Q+H D + GL Sbjct: 12 SDFALHPQVIEALESKGFHYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPANAERQTNQPRA---LIMAPTRELAVQIHSDAEALSHLTGL 113
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RH16_ARATH (DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis thaliana GN=RH16 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13 Identity = 40/107 (37.38%), Postives = 62/107 (57.94%), Query Frame = 1 Query: 367 QERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHED 687 +E+ E E P + + L L KGIE IQ +L+G D+V RA+TG GKTLA++LP+L+ L + + + KK APS +L+P++EL +QV+ + Sbjct: 37 EEQKEEEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKL----APSAFILVPSRELCQQVYTE 139
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SERP5 (ATP-dependent RNA helicase rhlB OS=Serratia proteamaculans (strain 568) GN=rhlB PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.339e-13 Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + + E L+ KG + PIQA+ + L G D+ G+A+TG GKTLAF+ L + P K +K RA L++ PT+ELA Q+H D + + GL Sbjct: 12 SDFALHPLVLEALEKKGFQHCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLTSTFHYLLSHPAKQDRKINQPRA---LIMAPTRELAVQIHSDAEALSQSTGL 113
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RH16_ORYSJ (DEAD-box ATP-dependent RNA helicase 16 OS=Oryza sativa subsp. japonica GN=Os03g0728800 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.252e-12 Identity = 41/112 (36.61%), Postives = 63/112 (56.25%), Query Frame = 1 Query: 370 ERGESEHPNAVS--RFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR----APSVLVLLPTKELAKQVHED 687 E G+ E VS + L+ L+ KG++ PIQ ++L+G D+V +A+TG GKT A++LP+L L K + GR AP+V +L+PT+EL +QVH + Sbjct: 82 EEGKEEEEREVSFDELGLDEQLKRALRKKGLDKATPIQREAIPLILEGKDVVAKAKTGSGKTFAYLLPMLHELL-------KLSAEGRIRKSAPNVFILVPTRELCQQVHNE 186
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SHIDS (ATP-dependent RNA helicase rhlB OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rhlB PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12 Identity = 39/105 (37.14%), Postives = 58/105 (55.24%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + + E L+ KG + PIQA+ + L G D+ G+A+TG GKT+AF+ + L + P A +K P L++ PT+ELA Q+H D + A GL Sbjct: 12 SDFSLHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSMFHYLLSHPAIADRKV---NKPRALIMAPTRELAVQIHADAEPLAEATGL 113
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_ECO5E (ATP-dependent RNA helicase rhlB OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rhlB PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12 Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + + E L+ KG + PIQA+ + L G D+ G+A+TG GKT+AF+ L + P A +K RA L++ PT+ELA Q+H D + A GL Sbjct: 12 SDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHCLLSHPAIADRKVNQPRA---LIMAPTRELAVQIHADAEPLAEATGL 113
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_ECO57 (ATP-dependent RNA helicase rhlB OS=Escherichia coli O157:H7 GN=rhlB PE=3 SV=3) HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12 Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + + E L+ KG + PIQA+ + L G D+ G+A+TG GKT+AF+ L + P A +K RA L++ PT+ELA Q+H D + A GL Sbjct: 12 SDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHCLLSHPAIADRKVNQPRA---LIMAPTRELAVQIHADAEPLAEATGL 113
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: DBP3_CRYNE (ATP-dependent RNA helicase DBP3 OS=Cryptococcus neoformans GN=DBP3 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12 Identity = 44/106 (41.51%), Postives = 59/106 (55.66%), Query Frame = 1 Query: 421 VPLREKLKS--KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP---SVLVLLPTKELAKQVHEDFDVYGGAVGLTS 723 +P+ KL+ E PIQA ++ +L D+VG A TG GKTLAF +P + L+ P K G G+ P +LVL PT+ELA+Q HE +G VGL S Sbjct: 180 LPINSKLQPFLNKFEKPTPIQACSWPALLSKKDVVGIAETGSGKTLAFGVPGINLLSQLPPVTGSKKGRGQVPGQIQMLVLAPTRELAQQSHEHLSAFGEQVGLKS 285 The following BLAST results are available for this feature:
BLAST of FC876606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 99
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC876606 ID=FC876606; Name=FC876606; organism=Citrus clementina; type=EST; length=728bpback to top |