FC876606

Overview
NameFC876606
Unique NameFC876606
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_XANC5 (ATP-dependent RNA helicase rhlB OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=rhlB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13
Identity = 42/105 (40.00%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   L   L+S G     PIQA+T  + L G D+ G+A+TG GKTLAF++ ++  L   P  A +K      P  L+L PT+ELA Q+H+D   +G  +GL
Sbjct:   12 SSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKP---EDPRALILAPTRELAIQIHKDAVKFGADLGL 113          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_XANAC (ATP-dependent RNA helicase rhlB OS=Xanthomonas axonopodis pv. citri GN=rhlB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13
Identity = 42/105 (40.00%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   L   L+S G     PIQA+T  + L G D+ G+A+TG GKTLAF++ ++  L   P  A +K      P  L+L PT+ELA Q+H+D   +G  +GL
Sbjct:   12 SSFDLHPALIAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLIRPALADRKP---EDPRALILAPTRELAIQIHKDAVKFGADLGL 113          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_ERWCT (ATP-dependent RNA helicase rhlB OS=Erwinia carotovora subsp. atroseptica GN=rhlB PE=3 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13
Identity = 41/105 (39.05%), Postives = 58/105 (55.24%), Query Frame = 1
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+SKG     PIQA+   + L G D+ G+A+TG GKTLAF+      L + P  A ++T   RA   L++ PT+ELA Q+H D +      GL
Sbjct:   12 SDFALHPQVIEALESKGFHYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPANAERQTNQPRA---LIMAPTRELAVQIHSDAEALSHLTGL 113          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RH16_ARATH (DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis thaliana GN=RH16 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.303e-13
Identity = 40/107 (37.38%), Postives = 62/107 (57.94%), Query Frame = 1
Query:  367 QERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHED 687
            +E+ E E P +     +   L   L  KGIE    IQ      +L+G D+V RA+TG GKTLA++LP+L+ L +  + + KK     APS  +L+P++EL +QV+ +
Sbjct:   37 EEQKEEEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKL----APSAFILVPSRELCQQVYTE 139          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SERP5 (ATP-dependent RNA helicase rhlB OS=Serratia proteamaculans (strain 568) GN=rhlB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.339e-13
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 1
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG +   PIQA+   + L G D+ G+A+TG GKTLAF+      L + P K  +K    RA   L++ PT+ELA Q+H D +    + GL
Sbjct:   12 SDFALHPLVLEALEKKGFQHCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLTSTFHYLLSHPAKQDRKINQPRA---LIMAPTRELAVQIHSDAEALSQSTGL 113          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RH16_ORYSJ (DEAD-box ATP-dependent RNA helicase 16 OS=Oryza sativa subsp. japonica GN=Os03g0728800 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.252e-12
Identity = 41/112 (36.61%), Postives = 63/112 (56.25%), Query Frame = 1
Query:  370 ERGESEHPNAVS--RFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGR----APSVLVLLPTKELAKQVHED 687
            E G+ E    VS     +   L+  L+ KG++   PIQ     ++L+G D+V +A+TG GKT A++LP+L  L        K +  GR    AP+V +L+PT+EL +QVH +
Sbjct:   82 EEGKEEEEREVSFDELGLDEQLKRALRKKGLDKATPIQREAIPLILEGKDVVAKAKTGSGKTFAYLLPMLHELL-------KLSAEGRIRKSAPNVFILVPTRELCQQVHNE 186          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SHIDS (ATP-dependent RNA helicase rhlB OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12
Identity = 39/105 (37.14%), Postives = 58/105 (55.24%), Query Frame = 1
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+  +   L + P  A +K      P  L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFSLHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSMFHYLLSHPAIADRKV---NKPRALIMAPTRELAVQIHADAEPLAEATGL 113          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_ECO5E (ATP-dependent RNA helicase rhlB OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 1
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P  A +K    RA   L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHCLLSHPAIADRKVNQPRA---LIMAPTRELAVQIHADAEPLAEATGL 113          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_ECO57 (ATP-dependent RNA helicase rhlB OS=Escherichia coli O157:H7 GN=rhlB PE=3 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 1
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P  A +K    RA   L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHCLLSHPAIADRKVNQPRA---LIMAPTRELAVQIHADAEPLAEATGL 113          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: DBP3_CRYNE (ATP-dependent RNA helicase DBP3 OS=Cryptococcus neoformans GN=DBP3 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12
Identity = 44/106 (41.51%), Postives = 59/106 (55.66%), Query Frame = 1
Query:  421 VPLREKLKS--KGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAP---SVLVLLPTKELAKQVHEDFDVYGGAVGLTS 723
            +P+  KL+      E   PIQA ++  +L   D+VG A TG GKTLAF +P +  L+  P     K G G+ P    +LVL PT+ELA+Q HE    +G  VGL S
Sbjct:  180 LPINSKLQPFLNKFEKPTPIQACSWPALLSKKDVVGIAETGSGKTLAFGVPGINLLSQLPPVTGSKKGRGQVPGQIQMLVLAPTRELAQQSHEHLSAFGEQVGLKS 285          
The following BLAST results are available for this feature:
BLAST of FC876606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
RHLB_XANC54.303e-1340.00ATP-dependent RNA helicase rhlB OS=Xanthomonas cam... [more]
RHLB_XANAC4.303e-1340.00ATP-dependent RNA helicase rhlB OS=Xanthomonas axo... [more]
RHLB_ERWCT4.303e-1339.05ATP-dependent RNA helicase rhlB OS=Erwinia carotov... [more]
RH16_ARATH4.303e-1337.38DEAD-box ATP-dependent RNA helicase 16 OS=Arabidop... [more]
RHLB_SERP57.339e-1338.10ATP-dependent RNA helicase rhlB OS=Serratia protea... [more]
RH16_ORYSJ1.252e-1236.61DEAD-box ATP-dependent RNA helicase 16 OS=Oryza sa... [more]
RHLB_SHIDS2.135e-1237.14ATP-dependent RNA helicase rhlB OS=Shigella dysent... [more]
RHLB_ECO5E2.135e-1238.10ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECO572.135e-1238.10ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
DBP3_CRYNE2.135e-1241.51ATP-dependent RNA helicase DBP3 OS=Cryptococcus ne... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1AF08RM1 EHR Citrus clementina cDNA clone KN0AAN1AF08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876606 ID=FC876606; Name=FC876606; organism=Citrus clementina; type=EST; length=728bp
GCACGAGGAGACGCCCTCTGCTGTTTCTTTGTATCTCATTTTAATTTTTG
TAACTTAACATAACCATTCATGCCTTCGATCGCTTTGTTTGACGGAAAAG
AAGTGAAAGACGAGAAGAAGATGAATAAGAAAATGGCTCTCAAGGACTTC
GAAGAAACGGAGGCGGCGTTAACTGAGAAGAGTTCGGATAAGAAGAAGAG
CAAGAAGAAGGAGAGTAGTAAGAAGCGGAAGGAATCGGAGATTGAGGAGG
AGGAAGAGAGAAGCGAAACGAGCTCGGAGTTAGGCGAGCCGGTGAATTTG
AAATCGGAGAAGGAGAAAAAGAAGAAGAAGAAAGCGAAAGTTGAGCCTGA
GGCTGGAGTGGAAGAGCAGGAGAGGGGTGAAAGCGAACATCCGAATGCGG
TTTCGAGGTTTAGAATATCGGTGCCATTAAGGGAAAAGCTCAAGTCCAAG
GGGATTGAGTCTTTGTTTCCTATTCAAGCTATGACTTTTGATATGGTTCT
TGATGGCTCTGATTTAGTCGGACGTGCACGGACCGGTCAGGGTAAAACTT
TAGCCTTTGTGTTGCCAATTTTAGAGTCTCTAACGAATGGGCCAACAAAA
GCGTCCAAGAAGACTGGATATGGCAGGGCTCCAAGTGTTTTGGTACTTTT
GCCTACTAAGGAATTGGCCAAACAGGTTCATGAGGACTTTGATGTCTATG
GCGGGGCAGTGGGACTGACCTCATGTTG
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