FC876606

Overview
NameFC876606
Unique NameFC876606
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SHISS (ATP-dependent RNA helicase rhlB OS=Shigella sonnei (strain Ss046) GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 1 
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P  A +K    RA   L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRA---LIMAPTRELAVQIHADAEPLAEATGL 113
[Close]
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SHIFL (ATP-dependent RNA helicase rhlB OS=Shigella flexneri GN=rhlB PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 1 
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P  A +K    RA   L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRA---LIMAPTRELAVQIHADAEPLAEATGL 113
[Close]
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SHIF8 (ATP-dependent RNA helicase rhlB OS=Shigella flexneri serotype 5b (strain 8401) GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 1 
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P  A +K    RA   L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRA---LIMAPTRELAVQIHADAEPLAEATGL 113
[Close]
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_KLEP7 (ATP-dependent RNA helicase rhlB OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 1 
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG  +  PIQA+   + L+G D+ G+A+TG GKT+AF+      L + P  A ++    RA   L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFALHPAVIEALEKKGFHNCTPIQALALPLTLEGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRQVNQPRA---LIMAPTRELAVQIHADAEPLAQATGL 113
[Close]
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_KLEP3 (ATP-dependent RNA helicase rhlB OS=Klebsiella pneumoniae (strain 342) GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 1 
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG  +  PIQA+   + L+G D+ G+A+TG GKT+AF+      L + P  A ++    RA   L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFALHPAVIEALEKKGFHNCTPIQALALPLTLEGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRQVNQPRA---LIMAPTRELAVQIHADAEPLAQATGL 113
[Close]
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_ESCF3 (ATP-dependent RNA helicase rhlB OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 1 
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P  A +K    RA   L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRA---LIMAPTRELAVQIHADAEPLAQATGL 113
[Close]
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_ENT38 (ATP-dependent RNA helicase rhlB OS=Enterobacter sp. (strain 638) GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1 
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L++KG     PIQA+   + L G D+ G+A+TG GKT+AF+      L + P  A +K    RA   L++ PT+ELA Q+H D +      GL
Sbjct:   12 SDFALHAKVIEALENKGFHYCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSAFHYLLSNPAMADRKVNQPRA---LIMAPTRELAVQIHADAEPLAQTTGL 113
[Close]
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_ECOUT (ATP-dependent RNA helicase rhlB OS=Escherichia coli (strain UTI89 / UPEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 1 
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P  A +K    RA   L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRA---LIMAPTRELAVQIHADAEPLAEATGL 113
[Close]
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_ECOSM (ATP-dependent RNA helicase rhlB OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 1 
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P  A +K    RA   L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRA---LIMAPTRELAVQIHADAEPLAQATGL 113
[Close]
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_ECOSE (ATP-dependent RNA helicase rhlB OS=Escherichia coli (strain SE11) GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 1 
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P  A +K    RA   L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRA---LIMAPTRELAVQIHADAEPLAEATGL 113
The following BLAST results are available for this feature:
BLAST of FC876606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
RHLB_SHISS2.789e-1238.10ATP-dependent RNA helicase rhlB OS=Shigella sonnei... [more]
RHLB_SHIFL2.789e-1238.10ATP-dependent RNA helicase rhlB OS=Shigella flexne... [more]
RHLB_SHIF82.789e-1238.10ATP-dependent RNA helicase rhlB OS=Shigella flexne... [more]
RHLB_KLEP72.789e-1237.14ATP-dependent RNA helicase rhlB OS=Klebsiella pneu... [more]
RHLB_KLEP32.789e-1237.14ATP-dependent RNA helicase rhlB OS=Klebsiella pneu... [more]
RHLB_ESCF32.789e-1238.10ATP-dependent RNA helicase rhlB OS=Escherichia fer... [more]
RHLB_ENT382.789e-1237.14ATP-dependent RNA helicase rhlB OS=Enterobacter sp... [more]
RHLB_ECOUT2.789e-1238.10ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECOSM2.789e-1238.10ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECOSE2.789e-1238.10ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAN1AF08RM1 EHR Citrus clementina cDNA clone KN0AAN1AF08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876606 ID=FC876606; Name=FC876606; organism=Citrus clementina; type=EST; length=728bp
GCACGAGGAGACGCCCTCTGCTGTTTCTTTGTATCTCATTTTAATTTTTG
TAACTTAACATAACCATTCATGCCTTCGATCGCTTTGTTTGACGGAAAAG
AAGTGAAAGACGAGAAGAAGATGAATAAGAAAATGGCTCTCAAGGACTTC
GAAGAAACGGAGGCGGCGTTAACTGAGAAGAGTTCGGATAAGAAGAAGAG
CAAGAAGAAGGAGAGTAGTAAGAAGCGGAAGGAATCGGAGATTGAGGAGG
AGGAAGAGAGAAGCGAAACGAGCTCGGAGTTAGGCGAGCCGGTGAATTTG
AAATCGGAGAAGGAGAAAAAGAAGAAGAAGAAAGCGAAAGTTGAGCCTGA
GGCTGGAGTGGAAGAGCAGGAGAGGGGTGAAAGCGAACATCCGAATGCGG
TTTCGAGGTTTAGAATATCGGTGCCATTAAGGGAAAAGCTCAAGTCCAAG
GGGATTGAGTCTTTGTTTCCTATTCAAGCTATGACTTTTGATATGGTTCT
TGATGGCTCTGATTTAGTCGGACGTGCACGGACCGGTCAGGGTAAAACTT
TAGCCTTTGTGTTGCCAATTTTAGAGTCTCTAACGAATGGGCCAACAAAA
GCGTCCAAGAAGACTGGATATGGCAGGGCTCCAAGTGTTTTGGTACTTTT
GCCTACTAAGGAATTGGCCAAACAGGTTCATGAGGACTTTGATGTCTATG
GCGGGGCAGTGGGACTGACCTCATGTTG
back to top