FC876606

Overview
NameFC876606
Unique NameFC876606
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_ECO81 (ATP-dependent RNA helicase rhlB OS=Escherichia coli O81 (strain ED1a) GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 1 
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P  A +K    RA   L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRA---LIMAPTRELAVQIHADAEPLAEATGL 113
[Close]
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_ECO7I (ATP-dependent RNA helicase rhlB OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 1 
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P  A +K    RA   L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRA---LIMAPTRELAVQIHADAEPLAQATGL 113
[Close]
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_ECO55 (ATP-dependent RNA helicase rhlB OS=Escherichia coli (strain 55989 / EAEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 1 
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P  A +K    RA   L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRA---LIMAPTRELAVQIHADAEPLAEATGL 113
[Close]
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_ECO45 (ATP-dependent RNA helicase rhlB OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 1 
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P  A +K    RA   L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRA---LIMAPTRELAVQIHADAEPLAEATGL 113
[Close]
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_ECO27 (ATP-dependent RNA helicase rhlB OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 1 
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P  A +K    RA   L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRA---LIMAPTRELAVQIHADAEPLAEATGL 113
[Close]
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_ECO24 (ATP-dependent RNA helicase rhlB OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.789e-12
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 1 
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P  A +K    RA   L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRA---LIMAPTRELAVQIHADAEPLAEATGL 113
[Close]
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_YERPY (ATP-dependent RNA helicase rhlB OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.643e-12
Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 1 
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L++KG +   PIQA+   + L G D+ G+A+TG GKTLAF+      L + P +  ++T   RA   L++ PT+ELA Q+H D +      GL
Sbjct:   12 SDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRA---LIMAPTRELAVQIHSDAESLSQVTGL 113
[Close]
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_YERPS (ATP-dependent RNA helicase rhlB OS=Yersinia pseudotuberculosis GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.643e-12
Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 1 
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L++KG +   PIQA+   + L G D+ G+A+TG GKTLAF+      L + P +  ++T   RA   L++ PT+ELA Q+H D +      GL
Sbjct:   12 SDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRA---LIMAPTRELAVQIHSDAESLSQVTGL 113
[Close]
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_YERPP (ATP-dependent RNA helicase rhlB OS=Yersinia pestis (strain Pestoides F) GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.643e-12
Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 1 
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L++KG +   PIQA+   + L G D+ G+A+TG GKTLAF+      L + P +  ++T   RA   L++ PT+ELA Q+H D +      GL
Sbjct:   12 SDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRA---LIMAPTRELAVQIHSDAESLSQVTGL 113
[Close]
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_YERPN (ATP-dependent RNA helicase rhlB OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.643e-12
Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 1 
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L++KG +   PIQA+   + L G D+ G+A+TG GKTLAF+      L + P +  ++T   RA   L++ PT+ELA Q+H D +      GL
Sbjct:   12 SDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRA---LIMAPTRELAVQIHSDAESLSQVTGL 113
The following BLAST results are available for this feature:
BLAST of FC876606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
RHLB_ECO812.789e-1238.10ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECO7I2.789e-1238.10ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECO552.789e-1238.10ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECO452.789e-1238.10ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECO272.789e-1238.10ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_ECO242.789e-1238.10ATP-dependent RNA helicase rhlB OS=Escherichia col... [more]
RHLB_YERPY3.643e-1237.14ATP-dependent RNA helicase rhlB OS=Yersinia pseudo... [more]
RHLB_YERPS3.643e-1237.14ATP-dependent RNA helicase rhlB OS=Yersinia pseudo... [more]
RHLB_YERPP3.643e-1237.14ATP-dependent RNA helicase rhlB OS=Yersinia pestis... [more]
RHLB_YERPN3.643e-1237.14ATP-dependent RNA helicase rhlB OS=Yersinia pestis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1AF08RM1 EHR Citrus clementina cDNA clone KN0AAN1AF08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876606 ID=FC876606; Name=FC876606; organism=Citrus clementina; type=EST; length=728bp
GCACGAGGAGACGCCCTCTGCTGTTTCTTTGTATCTCATTTTAATTTTTG
TAACTTAACATAACCATTCATGCCTTCGATCGCTTTGTTTGACGGAAAAG
AAGTGAAAGACGAGAAGAAGATGAATAAGAAAATGGCTCTCAAGGACTTC
GAAGAAACGGAGGCGGCGTTAACTGAGAAGAGTTCGGATAAGAAGAAGAG
CAAGAAGAAGGAGAGTAGTAAGAAGCGGAAGGAATCGGAGATTGAGGAGG
AGGAAGAGAGAAGCGAAACGAGCTCGGAGTTAGGCGAGCCGGTGAATTTG
AAATCGGAGAAGGAGAAAAAGAAGAAGAAGAAAGCGAAAGTTGAGCCTGA
GGCTGGAGTGGAAGAGCAGGAGAGGGGTGAAAGCGAACATCCGAATGCGG
TTTCGAGGTTTAGAATATCGGTGCCATTAAGGGAAAAGCTCAAGTCCAAG
GGGATTGAGTCTTTGTTTCCTATTCAAGCTATGACTTTTGATATGGTTCT
TGATGGCTCTGATTTAGTCGGACGTGCACGGACCGGTCAGGGTAAAACTT
TAGCCTTTGTGTTGCCAATTTTAGAGTCTCTAACGAATGGGCCAACAAAA
GCGTCCAAGAAGACTGGATATGGCAGGGCTCCAAGTGTTTTGGTACTTTT
GCCTACTAAGGAATTGGCCAAACAGGTTCATGAGGACTTTGATGTCTATG
GCGGGGCAGTGGGACTGACCTCATGTTG
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