FC876606
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_YERPE (ATP-dependent RNA helicase rhlB OS=Yersinia pestis GN=rhlB PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.643e-12 Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + + E L++KG + PIQA+ + L G D+ G+A+TG GKTLAF+ L + P + ++T RA L++ PT+ELA Q+H D + GL Sbjct: 12 SDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRA---LIMAPTRELAVQIHSDAESLSQVTGL 113
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_YERPB (ATP-dependent RNA helicase rhlB OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rhlB PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.643e-12 Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + + E L++KG + PIQA+ + L G D+ G+A+TG GKTLAF+ L + P + ++T RA L++ PT+ELA Q+H D + GL Sbjct: 12 SDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRA---LIMAPTRELAVQIHSDAESLSQVTGL 113
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_YERPA (ATP-dependent RNA helicase rhlB OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rhlB PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.643e-12 Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + + E L++KG + PIQA+ + L G D+ G+A+TG GKTLAF+ L + P + ++T RA L++ PT+ELA Q+H D + GL Sbjct: 12 SDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRA---LIMAPTRELAVQIHSDAESLSQVTGL 113
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_YERP3 (ATP-dependent RNA helicase rhlB OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rhlB PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.643e-12 Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + + E L++KG + PIQA+ + L G D+ G+A+TG GKTLAF+ L + P + ++T RA L++ PT+ELA Q+H D + GL Sbjct: 12 SDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRA---LIMAPTRELAVQIHSDAESLSQVTGL 113
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SHIBS (ATP-dependent RNA helicase rhlB OS=Shigella boydii serotype 4 (strain Sb227) GN=rhlB PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.643e-12 Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + + E L+ KG + PIQA+ + L G D+ G+A+TG GKT+AF+ L + P A +K RA L++ PT+ELA Q+H D + A GL Sbjct: 12 SDFALHPKVVEVLEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRA---LIMAPTRELAVQIHADAEPLAEATGL 113
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SHIB3 (ATP-dependent RNA helicase rhlB OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=rhlB PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.643e-12 Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + + E L+ KG + PIQA+ + L G D+ G+A+TG GKT+AF+ L + P A +K RA L++ PT+ELA Q+H D + A GL Sbjct: 12 SDFALHPKVVEVLEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRA---LIMAPTRELAVQIHADAEPLAEATGL 113
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RH45_ORYSJ (DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sativa subsp. japonica GN=Os08g0154200 PE=3 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 4.757e-12 Identity = 36/97 (37.11%), Postives = 54/97 (55.67%), Query Frame = 1 Query: 427 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 L + +K G E PIQA +++ G D +G A+TG GKTLAFVLP+L + + P G P L++ PT+EL Q+H D + ++G+ Sbjct: 296 LLDTIKKLGFEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQPPVVP-----GDGPIGLIMAPTRELVVQIHSDIKKFAKSLGI 387
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_ERWT9 (ATP-dependent RNA helicase rhlB OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=rhlB PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12 Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + + E L++KG + PIQA+ L G D+ G+A+TG GKT+AF+ L + P ++T RA L+L PT+ELA Q+H D + GL Sbjct: 12 SDFALHPQVIEALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHHLLSHPAPEGRQTNQPRA---LILAPTRELAVQIHADAEPLAQITGL 113
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RRP3_ASPNC (ATP-dependent rRNA helicase rrp3 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rrp3 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12 Identity = 45/120 (37.50%), Postives = 65/120 (54.17%), Query Frame = 1 Query: 367 QERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGLTSC 726 QE G+S+ I L E ++ G ++ PIQ + + L G DL+G A TG GKT AF LPIL++L P + +G LVL PT+ELA Q+ + F+ G ++G+ SC Sbjct: 42 QEEGQSK---TFKELGIIEQLCEACETMGYKAPTPIQRESIPLALKGRDLIGLAETGSGKTAAFALPILQALMEKP-----QPFFG-----LVLAPTRELAYQISKSFESLGASMGVRSC 148
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_PHOLL (ATP-dependent RNA helicase rhlB OS=Photorhabdus luminescens subsp. laumondii GN=rhlB PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12 Identity = 39/105 (37.14%), Postives = 58/105 (55.24%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + + E L +KG + PIQA+T ++G D+ G+A+TG GKTLAF+ L P ++T RA L++ PT+ELA Q++ D + A GL Sbjct: 12 SDFALHPKVIEALDNKGFSNCTPIQALTLPFTVEGRDVAGQAQTGTGKTLAFLASAFHYLLTHPAAEERQTNQPRA---LIMAPTRELAVQIYSDAEDLAQATGL 113 The following BLAST results are available for this feature:
BLAST of FC876606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 99
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876606 ID=FC876606; Name=FC876606; organism=Citrus clementina; type=EST; length=728bpback to top |