FC876606

Overview
NameFC876606
Unique NameFC876606
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_YERPE (ATP-dependent RNA helicase rhlB OS=Yersinia pestis GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.643e-12
Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 1
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L++KG +   PIQA+   + L G D+ G+A+TG GKTLAF+      L + P +  ++T   RA   L++ PT+ELA Q+H D +      GL
Sbjct:   12 SDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRA---LIMAPTRELAVQIHSDAESLSQVTGL 113          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_YERPB (ATP-dependent RNA helicase rhlB OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.643e-12
Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 1
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L++KG +   PIQA+   + L G D+ G+A+TG GKTLAF+      L + P +  ++T   RA   L++ PT+ELA Q+H D +      GL
Sbjct:   12 SDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRA---LIMAPTRELAVQIHSDAESLSQVTGL 113          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_YERPA (ATP-dependent RNA helicase rhlB OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.643e-12
Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 1
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L++KG +   PIQA+   + L G D+ G+A+TG GKTLAF+      L + P +  ++T   RA   L++ PT+ELA Q+H D +      GL
Sbjct:   12 SDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRA---LIMAPTRELAVQIHSDAESLSQVTGL 113          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_YERP3 (ATP-dependent RNA helicase rhlB OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.643e-12
Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 1
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L++KG +   PIQA+   + L G D+ G+A+TG GKTLAF+      L + P +  ++T   RA   L++ PT+ELA Q+H D +      GL
Sbjct:   12 SDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVAGQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRA---LIMAPTRELAVQIHSDAESLSQVTGL 113          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SHIBS (ATP-dependent RNA helicase rhlB OS=Shigella boydii serotype 4 (strain Sb227) GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.643e-12
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 1
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P  A +K    RA   L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFALHPKVVEVLEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRA---LIMAPTRELAVQIHADAEPLAEATGL 113          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SHIB3 (ATP-dependent RNA helicase rhlB OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=rhlB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.643e-12
Identity = 40/105 (38.10%), Postives = 58/105 (55.24%), Query Frame = 1
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P  A +K    RA   L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFALHPKVVEVLEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRA---LIMAPTRELAVQIHADAEPLAEATGL 113          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RH45_ORYSJ (DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sativa subsp. japonica GN=Os08g0154200 PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.757e-12
Identity = 36/97 (37.11%), Postives = 54/97 (55.67%), Query Frame = 1
Query:  427 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            L + +K  G E   PIQA    +++ G D +G A+TG GKTLAFVLP+L  + + P         G  P  L++ PT+EL  Q+H D   +  ++G+
Sbjct:  296 LLDTIKKLGFEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQPPVVP-----GDGPIGLIMAPTRELVVQIHSDIKKFAKSLGI 387          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_ERWT9 (ATP-dependent RNA helicase rhlB OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=rhlB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.213e-12
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L++KG  +  PIQA+     L G D+ G+A+TG GKT+AF+      L + P    ++T   RA   L+L PT+ELA Q+H D +      GL
Sbjct:   12 SDFALHPQVIEALETKGFHNCTPIQALALPFTLSGRDVAGQAQTGTGKTMAFLTSTFHHLLSHPAPEGRQTNQPRA---LILAPTRELAVQIHADAEPLAQITGL 113          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RRP3_ASPNC (ATP-dependent rRNA helicase rrp3 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rrp3 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12
Identity = 45/120 (37.50%), Postives = 65/120 (54.17%), Query Frame = 1
Query:  367 QERGESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGLTSC 726
            QE G+S+         I   L E  ++ G ++  PIQ  +  + L G DL+G A TG GKT AF LPIL++L   P     +  +G     LVL PT+ELA Q+ + F+  G ++G+ SC
Sbjct:   42 QEEGQSK---TFKELGIIEQLCEACETMGYKAPTPIQRESIPLALKGRDLIGLAETGSGKTAAFALPILQALMEKP-----QPFFG-----LVLAPTRELAYQISKSFESLGASMGVRSC 148          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_PHOLL (ATP-dependent RNA helicase rhlB OS=Photorhabdus luminescens subsp. laumondii GN=rhlB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12
Identity = 39/105 (37.14%), Postives = 58/105 (55.24%), Query Frame = 1
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L +KG  +  PIQA+T    ++G D+ G+A+TG GKTLAF+      L   P    ++T   RA   L++ PT+ELA Q++ D +    A GL
Sbjct:   12 SDFALHPKVIEALDNKGFSNCTPIQALTLPFTVEGRDVAGQAQTGTGKTLAFLASAFHYLLTHPAAEERQTNQPRA---LIMAPTRELAVQIYSDAEDLAQATGL 113          
The following BLAST results are available for this feature:
BLAST of FC876606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
RHLB_YERPE3.643e-1237.14ATP-dependent RNA helicase rhlB OS=Yersinia pestis... [more]
RHLB_YERPB3.643e-1237.14ATP-dependent RNA helicase rhlB OS=Yersinia pseudo... [more]
RHLB_YERPA3.643e-1237.14ATP-dependent RNA helicase rhlB OS=Yersinia pestis... [more]
RHLB_YERP33.643e-1237.14ATP-dependent RNA helicase rhlB OS=Yersinia pseudo... [more]
RHLB_SHIBS3.643e-1238.10ATP-dependent RNA helicase rhlB OS=Shigella boydii... [more]
RHLB_SHIB33.643e-1238.10ATP-dependent RNA helicase rhlB OS=Shigella boydii... [more]
RH45_ORYSJ4.757e-1237.11DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sa... [more]
RHLB_ERWT96.213e-1237.14ATP-dependent RNA helicase rhlB OS=Erwinia tasmani... [more]
RRP3_ASPNC8.115e-1237.50ATP-dependent rRNA helicase rrp3 OS=Aspergillus ni... [more]
RHLB_PHOLL8.115e-1237.14ATP-dependent RNA helicase rhlB OS=Photorhabdus lu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1AF08RM1 EHR Citrus clementina cDNA clone KN0AAN1AF08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876606 ID=FC876606; Name=FC876606; organism=Citrus clementina; type=EST; length=728bp
GCACGAGGAGACGCCCTCTGCTGTTTCTTTGTATCTCATTTTAATTTTTG
TAACTTAACATAACCATTCATGCCTTCGATCGCTTTGTTTGACGGAAAAG
AAGTGAAAGACGAGAAGAAGATGAATAAGAAAATGGCTCTCAAGGACTTC
GAAGAAACGGAGGCGGCGTTAACTGAGAAGAGTTCGGATAAGAAGAAGAG
CAAGAAGAAGGAGAGTAGTAAGAAGCGGAAGGAATCGGAGATTGAGGAGG
AGGAAGAGAGAAGCGAAACGAGCTCGGAGTTAGGCGAGCCGGTGAATTTG
AAATCGGAGAAGGAGAAAAAGAAGAAGAAGAAAGCGAAAGTTGAGCCTGA
GGCTGGAGTGGAAGAGCAGGAGAGGGGTGAAAGCGAACATCCGAATGCGG
TTTCGAGGTTTAGAATATCGGTGCCATTAAGGGAAAAGCTCAAGTCCAAG
GGGATTGAGTCTTTGTTTCCTATTCAAGCTATGACTTTTGATATGGTTCT
TGATGGCTCTGATTTAGTCGGACGTGCACGGACCGGTCAGGGTAAAACTT
TAGCCTTTGTGTTGCCAATTTTAGAGTCTCTAACGAATGGGCCAACAAAA
GCGTCCAAGAAGACTGGATATGGCAGGGCTCCAAGTGTTTTGGTACTTTT
GCCTACTAAGGAATTGGCCAAACAGGTTCATGAGGACTTTGATGTCTATG
GCGGGGCAGTGGGACTGACCTCATGTTG
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