FC876606

Overview
NameFC876606
Unique NameFC876606
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RRP3_SCHPO (ATP-dependent rRNA helicase rrp3 OS=Schizosaccharomyces pombe GN=rrp3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.060e-11
Identity = 39/114 (34.21%), Postives = 60/114 (52.63%), Query Frame = 1
Query:  382 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGLTS 723
            +E P       +   L E  +  G ++  PIQ     +VL+  D++G A+TG GKT AF LP+++ L N P+              +VL PT+ELA Q+ E F+  GG++G+ S
Sbjct:   42 NEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPF----------FAVVLAPTRELAYQISEQFEAIGGSIGVRS 145          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RH42_ORYSJ (DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa subsp. japonica GN=Os08g0159900 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.384e-11
Identity = 36/97 (37.11%), Postives = 53/97 (54.64%), Query Frame = 1
Query:  427 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            L + +K  G E    IQA    +++ G D +G A+TG GKTLAFVLP+L  + + P         G  P  L++ PT+EL  Q+H D   +  A+G+
Sbjct:  435 LLDTIKKLGFEKPMSIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQPAVVP-----GDGPIGLIMAPTRELVVQIHSDIKKFSKALGI 526          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: DDX49_MOUSE (Probable ATP-dependent RNA helicase DDX49 OS=Mus musculus GN=Ddx49 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.384e-11
Identity = 42/100 (42.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:  427 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGLTSC 726
            L E+ +  G++   P+Q      +L+G D +G A+TG GKT AFVLPIL+ L+  P        YG     LVL PT+ELA Q+ E F V G  +GL  C
Sbjct:   13 LVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDP--------YG--IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDC 102          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: DDX49_HUMAN (Probable ATP-dependent RNA helicase DDX49 OS=Homo sapiens GN=DDX49 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.384e-11
Identity = 42/100 (42.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:  427 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGLTSC 726
            L E+ +  G++   P+Q      +L+G D +G A+TG GKT AFVLPIL+ L+  P        YG     LVL PT+ELA Q+ E F V G  +GL  C
Sbjct:   13 LVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDP--------YG--IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDC 102          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RH28_ORYSJ (DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa subsp. japonica GN=Os12g0481100 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 42/102 (41.18%), Postives = 53/102 (51.96%), Query Frame = 1
Query:  376 GESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVH 681
            G S H N+     +S PL    ++ G +   PIQA    + L G D+ G A TG GKT AF LP+LE L   P +         A  VL+L PT+ELA QVH
Sbjct:  188 GASFHANSFLELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERLLFRPKRVP-------AIRVLILTPTRELAAQVH 282          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_XYLFT (ATP-dependent RNA helicase rhlB OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=rhlB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 39/105 (37.14%), Postives = 58/105 (55.24%), Query Frame = 1
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   L   L   G     PIQA+T  + L G D+ G+A+TG GKTLAF++ ++  L + P   ++       P  L+L PT+ELA Q++ D   +GG +GL
Sbjct:   12 SSFDLHPALLTGLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVVNRLLSSPGLVNRNP---EDPRALILAPTRELAIQIYNDAVKFGGNLGL 113          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SALTY (ATP-dependent RNA helicase rhlB OS=Salmonella typhimurium GN=rhlB PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P    +K    RA   L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRA---LIMAPTRELAVQIHADAEPLAQATGL 113          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SALTI (ATP-dependent RNA helicase rhlB OS=Salmonella typhi GN=rhlB PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P    +K    RA   L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRA---LIMAPTRELAVQIHADAEPLAQATGL 113          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SALSV (ATP-dependent RNA helicase rhlB OS=Salmonella schwarzengrund (strain CVM19633) GN=rhlB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P    +K    RA   L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRA---LIMAPTRELAVQIHADAEPLAQATGL 113          
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SALPK (ATP-dependent RNA helicase rhlB OS=Salmonella paratyphi A (strain AKU_12601) GN=rhlB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P    +K    RA   L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRA---LIMAPTRELAVQIHADAEPLAQATGL 113          
The following BLAST results are available for this feature:
BLAST of FC876606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
RRP3_SCHPO1.060e-1134.21ATP-dependent rRNA helicase rrp3 OS=Schizosaccharo... [more]
RH42_ORYSJ1.384e-1137.11DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sa... [more]
DDX49_MOUSE1.384e-1142.00Probable ATP-dependent RNA helicase DDX49 OS=Mus m... [more]
DDX49_HUMAN1.384e-1142.00Probable ATP-dependent RNA helicase DDX49 OS=Homo ... [more]
RH28_ORYSJ1.808e-1141.18DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sa... [more]
RHLB_XYLFT2.361e-1137.14ATP-dependent RNA helicase rhlB OS=Xylella fastidi... [more]
RHLB_SALTY2.361e-1137.14ATP-dependent RNA helicase rhlB OS=Salmonella typh... [more]
RHLB_SALTI2.361e-1137.14ATP-dependent RNA helicase rhlB OS=Salmonella typh... [more]
RHLB_SALSV2.361e-1137.14ATP-dependent RNA helicase rhlB OS=Salmonella schw... [more]
RHLB_SALPK2.361e-1137.14ATP-dependent RNA helicase rhlB OS=Salmonella para... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1AF08RM1 EHR Citrus clementina cDNA clone KN0AAN1AF08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876606 ID=FC876606; Name=FC876606; organism=Citrus clementina; type=EST; length=728bp
GCACGAGGAGACGCCCTCTGCTGTTTCTTTGTATCTCATTTTAATTTTTG
TAACTTAACATAACCATTCATGCCTTCGATCGCTTTGTTTGACGGAAAAG
AAGTGAAAGACGAGAAGAAGATGAATAAGAAAATGGCTCTCAAGGACTTC
GAAGAAACGGAGGCGGCGTTAACTGAGAAGAGTTCGGATAAGAAGAAGAG
CAAGAAGAAGGAGAGTAGTAAGAAGCGGAAGGAATCGGAGATTGAGGAGG
AGGAAGAGAGAAGCGAAACGAGCTCGGAGTTAGGCGAGCCGGTGAATTTG
AAATCGGAGAAGGAGAAAAAGAAGAAGAAGAAAGCGAAAGTTGAGCCTGA
GGCTGGAGTGGAAGAGCAGGAGAGGGGTGAAAGCGAACATCCGAATGCGG
TTTCGAGGTTTAGAATATCGGTGCCATTAAGGGAAAAGCTCAAGTCCAAG
GGGATTGAGTCTTTGTTTCCTATTCAAGCTATGACTTTTGATATGGTTCT
TGATGGCTCTGATTTAGTCGGACGTGCACGGACCGGTCAGGGTAAAACTT
TAGCCTTTGTGTTGCCAATTTTAGAGTCTCTAACGAATGGGCCAACAAAA
GCGTCCAAGAAGACTGGATATGGCAGGGCTCCAAGTGTTTTGGTACTTTT
GCCTACTAAGGAATTGGCCAAACAGGTTCATGAGGACTTTGATGTCTATG
GCGGGGCAGTGGGACTGACCTCATGTTG
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