FC876606
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RRP3_SCHPO (ATP-dependent rRNA helicase rrp3 OS=Schizosaccharomyces pombe GN=rrp3 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.060e-11 Identity = 39/114 (34.21%), Postives = 60/114 (52.63%), Query Frame = 1 Query: 382 SEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGLTS 723 +E P + L E + G ++ PIQ +VL+ D++G A+TG GKT AF LP+++ L N P+ +VL PT+ELA Q+ E F+ GG++G+ S Sbjct: 42 NEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPF----------FAVVLAPTRELAYQISEQFEAIGGSIGVRS 145
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RH42_ORYSJ (DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa subsp. japonica GN=Os08g0159900 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.384e-11 Identity = 36/97 (37.11%), Postives = 53/97 (54.64%), Query Frame = 1 Query: 427 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 L + +K G E IQA +++ G D +G A+TG GKTLAFVLP+L + + P G P L++ PT+EL Q+H D + A+G+ Sbjct: 435 LLDTIKKLGFEKPMSIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQPAVVP-----GDGPIGLIMAPTRELVVQIHSDIKKFSKALGI 526
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: DDX49_MOUSE (Probable ATP-dependent RNA helicase DDX49 OS=Mus musculus GN=Ddx49 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.384e-11 Identity = 42/100 (42.00%), Postives = 56/100 (56.00%), Query Frame = 1 Query: 427 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGLTSC 726 L E+ + G++ P+Q +L+G D +G A+TG GKT AFVLPIL+ L+ P YG LVL PT+ELA Q+ E F V G +GL C Sbjct: 13 LVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDP--------YG--IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDC 102
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: DDX49_HUMAN (Probable ATP-dependent RNA helicase DDX49 OS=Homo sapiens GN=DDX49 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.384e-11 Identity = 42/100 (42.00%), Postives = 56/100 (56.00%), Query Frame = 1 Query: 427 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGLTSC 726 L E+ + G++ P+Q +L+G D +G A+TG GKT AFVLPIL+ L+ P YG LVL PT+ELA Q+ E F V G +GL C Sbjct: 13 LVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDP--------YG--IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDC 102
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RH28_ORYSJ (DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa subsp. japonica GN=Os12g0481100 PE=2 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11 Identity = 42/102 (41.18%), Postives = 53/102 (51.96%), Query Frame = 1 Query: 376 GESEHPNAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVH 681 G S H N+ +S PL ++ G + PIQA + L G D+ G A TG GKT AF LP+LE L P + A VL+L PT+ELA QVH Sbjct: 188 GASFHANSFLELNLSRPLLRACEALGYQKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPVLERLLFRPKRVP-------AIRVLILTPTRELAAQVH 282
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_XYLFT (ATP-dependent RNA helicase rhlB OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=rhlB PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11 Identity = 39/105 (37.14%), Postives = 58/105 (55.24%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + L L G PIQA+T + L G D+ G+A+TG GKTLAF++ ++ L + P ++ P L+L PT+ELA Q++ D +GG +GL Sbjct: 12 SSFDLHPALLTGLTRAGFTLCTPIQALTLPVALAGRDIAGQAQTGTGKTLAFLVVVVNRLLSSPGLVNRNP---EDPRALILAPTRELAIQIYNDAVKFGGNLGL 113
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SALTY (ATP-dependent RNA helicase rhlB OS=Salmonella typhimurium GN=rhlB PE=3 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11 Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + + E L+ KG + PIQA+ + L G D+ G+A+TG GKT+AF+ L + P +K RA L++ PT+ELA Q+H D + A GL Sbjct: 12 SDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRA---LIMAPTRELAVQIHADAEPLAQATGL 113
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SALTI (ATP-dependent RNA helicase rhlB OS=Salmonella typhi GN=rhlB PE=3 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11 Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + + E L+ KG + PIQA+ + L G D+ G+A+TG GKT+AF+ L + P +K RA L++ PT+ELA Q+H D + A GL Sbjct: 12 SDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRA---LIMAPTRELAVQIHADAEPLAQATGL 113
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SALSV (ATP-dependent RNA helicase rhlB OS=Salmonella schwarzengrund (strain CVM19633) GN=rhlB PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11 Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + + E L+ KG + PIQA+ + L G D+ G+A+TG GKT+AF+ L + P +K RA L++ PT+ELA Q+H D + A GL Sbjct: 12 SDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRA---LIMAPTRELAVQIHADAEPLAQATGL 113
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SALPK (ATP-dependent RNA helicase rhlB OS=Salmonella paratyphi A (strain AKU_12601) GN=rhlB PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11 Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + + E L+ KG + PIQA+ + L G D+ G+A+TG GKT+AF+ L + P +K RA L++ PT+ELA Q+H D + A GL Sbjct: 12 SDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRA---LIMAPTRELAVQIHADAEPLAQATGL 113 The following BLAST results are available for this feature:
BLAST of FC876606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 99
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876606 ID=FC876606; Name=FC876606; organism=Citrus clementina; type=EST; length=728bpback to top |