FC876606
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SALPC (ATP-dependent RNA helicase rhlB OS=Salmonella paratyphi C (strain RKS4594) GN=rhlB PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11 Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + + E L+ KG + PIQA+ + L G D+ G+A+TG GKT+AF+ L + P +K RA L++ PT+ELA Q+H D + A GL Sbjct: 12 SDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRA---LIMAPTRELAVQIHADAEPLAQATGL 113
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SALPB (ATP-dependent RNA helicase rhlB OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rhlB PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11 Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + + E L+ KG + PIQA+ + L G D+ G+A+TG GKT+AF+ L + P +K RA L++ PT+ELA Q+H D + A GL Sbjct: 12 SDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRA---LIMAPTRELAVQIHADAEPLAQATGL 113
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SALNS (ATP-dependent RNA helicase rhlB OS=Salmonella newport (strain SL254) GN=rhlB PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11 Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + + E L+ KG + PIQA+ + L G D+ G+A+TG GKT+AF+ L + P +K RA L++ PT+ELA Q+H D + A GL Sbjct: 12 SDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRA---LIMAPTRELAVQIHADAEPLAQATGL 113
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SALHS (ATP-dependent RNA helicase rhlB OS=Salmonella heidelberg (strain SL476) GN=rhlB PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11 Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + + E L+ KG + PIQA+ + L G D+ G+A+TG GKT+AF+ L + P +K RA L++ PT+ELA Q+H D + A GL Sbjct: 12 SDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRA---LIMAPTRELAVQIHADAEPLAQATGL 113
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SALG2 (ATP-dependent RNA helicase rhlB OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rhlB PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11 Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + + E L+ KG + PIQA+ + L G D+ G+A+TG GKT+AF+ L + P +K RA L++ PT+ELA Q+H D + A GL Sbjct: 12 SDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRA---LIMAPTRELAVQIHADAEPLAQATGL 113
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SALEP (ATP-dependent RNA helicase rhlB OS=Salmonella enteritidis PT4 (strain P125109) GN=rhlB PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11 Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + + E L+ KG + PIQA+ + L G D+ G+A+TG GKT+AF+ L + P +K RA L++ PT+ELA Q+H D + A GL Sbjct: 12 SDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRA---LIMAPTRELAVQIHADAEPLAQATGL 113
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SALCH (ATP-dependent RNA helicase rhlB OS=Salmonella choleraesuis GN=rhlB PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11 Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + + E L+ KG + PIQA+ + L G D+ G+A+TG GKT+AF+ L + P +K RA L++ PT+ELA Q+H D + A GL Sbjct: 12 SDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRA---LIMAPTRELAVQIHADAEPLAQATGL 113
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SALA4 (ATP-dependent RNA helicase rhlB OS=Salmonella agona (strain SL483) GN=rhlB PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11 Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1 Query: 403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 S F + + E L+ KG + PIQA+ + L G D+ G+A+TG GKT+AF+ L + P +K RA L++ PT+ELA Q+H D + A GL Sbjct: 12 SDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRA---LIMAPTRELAVQIHADAEPLAQATGL 113
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: DDX49_DROME (Probable ATP-dependent RNA helicase Dbp45A OS=Drosophila melanogaster GN=Dbp45A PE=2 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11 Identity = 41/100 (41.00%), Postives = 53/100 (53.00%), Query Frame = 1 Query: 427 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGLTSC 726 L ++L G++ PIQ +L G D +G A+TG GKT AF LPILE L+ P + LVL PT ELA Q+ E F V G A+G+ C Sbjct: 18 LVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEEPV----------SHFALVLTPTHELAYQISEQFLVAGQAMGVRVC 107
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RRP3_EMENI (ATP-dependent rRNA helicase rrp3 OS=Emericella nidulans GN=rrp3 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11 Identity = 42/118 (35.59%), Postives = 63/118 (53.39%), Query Frame = 1 Query: 367 QERGESEHP-NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717 Q GE P + I L E ++ G ++ PIQ+ + L+G D++G A TG GKT AF LP+L++L P +T +G LVL PT+ELA Q+ + F+ G +G+ Sbjct: 36 QTSGEEPAPAKSFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQALMEAP-----QTLFG-----LVLAPTRELAYQISQAFETLGSTIGV 143 The following BLAST results are available for this feature:
BLAST of FC876606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 99
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876606 ID=FC876606; Name=FC876606; organism=Citrus clementina; type=EST; length=728bpback to top |