FC876606

Overview
NameFC876606
Unique NameFC876606
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SALPC (ATP-dependent RNA helicase rhlB OS=Salmonella paratyphi C (strain RKS4594) GN=rhlB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1 
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P    +K    RA   L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRA---LIMAPTRELAVQIHADAEPLAQATGL 113
[Close]
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SALPB (ATP-dependent RNA helicase rhlB OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rhlB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1 
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P    +K    RA   L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRA---LIMAPTRELAVQIHADAEPLAQATGL 113
[Close]
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SALNS (ATP-dependent RNA helicase rhlB OS=Salmonella newport (strain SL254) GN=rhlB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1 
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P    +K    RA   L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRA---LIMAPTRELAVQIHADAEPLAQATGL 113
[Close]
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SALHS (ATP-dependent RNA helicase rhlB OS=Salmonella heidelberg (strain SL476) GN=rhlB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1 
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P    +K    RA   L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRA---LIMAPTRELAVQIHADAEPLAQATGL 113
[Close]
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SALG2 (ATP-dependent RNA helicase rhlB OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rhlB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1 
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P    +K    RA   L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRA---LIMAPTRELAVQIHADAEPLAQATGL 113
[Close]
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SALEP (ATP-dependent RNA helicase rhlB OS=Salmonella enteritidis PT4 (strain P125109) GN=rhlB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1 
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P    +K    RA   L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRA---LIMAPTRELAVQIHADAEPLAQATGL 113
[Close]
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SALCH (ATP-dependent RNA helicase rhlB OS=Salmonella choleraesuis GN=rhlB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1 
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P    +K    RA   L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRA---LIMAPTRELAVQIHADAEPLAQATGL 113
[Close]
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RHLB_SALA4 (ATP-dependent RNA helicase rhlB OS=Salmonella agona (strain SL483) GN=rhlB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1 
Query:  403 SRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            S F +   + E L+ KG  +  PIQA+   + L G D+ G+A+TG GKT+AF+      L + P    +K    RA   L++ PT+ELA Q+H D +    A GL
Sbjct:   12 SDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRA---LIMAPTRELAVQIHADAEPLAQATGL 113
[Close]
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: DDX49_DROME (Probable ATP-dependent RNA helicase Dbp45A OS=Drosophila melanogaster GN=Dbp45A PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 41/100 (41.00%), Postives = 53/100 (53.00%), Query Frame = 1 
Query:  427 LREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGLTSC 726
            L ++L   G++   PIQ      +L G D +G A+TG GKT AF LPILE L+  P           +   LVL PT ELA Q+ E F V G A+G+  C
Sbjct:   18 LVKQLTKLGLKGATPIQQKCIPAILAGQDCIGAAKTGSGKTFAFALPILERLSEEPV----------SHFALVLTPTHELAYQISEQFLVAGQAMGVRVC 107
[Close]
BLAST of FC876606 vs. ExPASy Swiss-Prot
Match: RRP3_EMENI (ATP-dependent rRNA helicase rrp3 OS=Emericella nidulans GN=rrp3 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11
Identity = 42/118 (35.59%), Postives = 63/118 (53.39%), Query Frame = 1 
Query:  367 QERGESEHP-NAVSRFRISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASKKTGYGRAPSVLVLLPTKELAKQVHEDFDVYGGAVGL 717
            Q  GE   P  +     I   L E  ++ G ++  PIQ+    + L+G D++G A TG GKT AF LP+L++L   P     +T +G     LVL PT+ELA Q+ + F+  G  +G+
Sbjct:   36 QTSGEEPAPAKSFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKTAAFALPMLQALMEAP-----QTLFG-----LVLAPTRELAYQISQAFETLGSTIGV 143
The following BLAST results are available for this feature:
BLAST of FC876606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
RHLB_SALPC2.361e-1137.14ATP-dependent RNA helicase rhlB OS=Salmonella para... [more]
RHLB_SALPB2.361e-1137.14ATP-dependent RNA helicase rhlB OS=Salmonella para... [more]
RHLB_SALNS2.361e-1137.14ATP-dependent RNA helicase rhlB OS=Salmonella newp... [more]
RHLB_SALHS2.361e-1137.14ATP-dependent RNA helicase rhlB OS=Salmonella heid... [more]
RHLB_SALG22.361e-1137.14ATP-dependent RNA helicase rhlB OS=Salmonella gall... [more]
RHLB_SALEP2.361e-1137.14ATP-dependent RNA helicase rhlB OS=Salmonella ente... [more]
RHLB_SALCH2.361e-1137.14ATP-dependent RNA helicase rhlB OS=Salmonella chol... [more]
RHLB_SALA42.361e-1137.14ATP-dependent RNA helicase rhlB OS=Salmonella agon... [more]
DDX49_DROME2.361e-1141.00Probable ATP-dependent RNA helicase Dbp45A OS=Dros... [more]
RRP3_EMENI4.027e-1135.59ATP-dependent rRNA helicase rrp3 OS=Emericella nid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1AF08RM1 EHR Citrus clementina cDNA clone KN0AAN1AF08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876606 ID=FC876606; Name=FC876606; organism=Citrus clementina; type=EST; length=728bp
GCACGAGGAGACGCCCTCTGCTGTTTCTTTGTATCTCATTTTAATTTTTG
TAACTTAACATAACCATTCATGCCTTCGATCGCTTTGTTTGACGGAAAAG
AAGTGAAAGACGAGAAGAAGATGAATAAGAAAATGGCTCTCAAGGACTTC
GAAGAAACGGAGGCGGCGTTAACTGAGAAGAGTTCGGATAAGAAGAAGAG
CAAGAAGAAGGAGAGTAGTAAGAAGCGGAAGGAATCGGAGATTGAGGAGG
AGGAAGAGAGAAGCGAAACGAGCTCGGAGTTAGGCGAGCCGGTGAATTTG
AAATCGGAGAAGGAGAAAAAGAAGAAGAAGAAAGCGAAAGTTGAGCCTGA
GGCTGGAGTGGAAGAGCAGGAGAGGGGTGAAAGCGAACATCCGAATGCGG
TTTCGAGGTTTAGAATATCGGTGCCATTAAGGGAAAAGCTCAAGTCCAAG
GGGATTGAGTCTTTGTTTCCTATTCAAGCTATGACTTTTGATATGGTTCT
TGATGGCTCTGATTTAGTCGGACGTGCACGGACCGGTCAGGGTAAAACTT
TAGCCTTTGTGTTGCCAATTTTAGAGTCTCTAACGAATGGGCCAACAAAA
GCGTCCAAGAAGACTGGATATGGCAGGGCTCCAAGTGTTTTGGTACTTTT
GCCTACTAAGGAATTGGCCAAACAGGTTCATGAGGACTTTGATGTCTATG
GCGGGGCAGTGGGACTGACCTCATGTTG
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