FC876613

Overview
NameFC876613
Unique NameFC876613
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length888
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876613 vs. ExPASy Swiss-Prot
Match: GSTO1_PIG (Glutathione S-transferase omega-1 OS=Sus scrofa GN=GSTO1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.521e-11
Identity = 55/190 (28.95%), Postives = 90/190 (47.37%), Query Frame = 1
Query:   94 PFALRVKWALKLKGVHYEYVEENLPNKSPLLLRYNPVYKKIPVLVHN-GKPLAESLLIIEYIDEAWKQNPLLPEDPYERANARFWAKFFDEKCVPEVMGAFASKGEEQEKAA---KARENLKMLERALEGK--PFFGGDKIGFLDIAVGWIGIWGRIVEEIAGVSLIDAETMPLLTAWLNNFLEVPVIKA 645
            PFA R    L  KG+ ++ +  NL NK     + NP    +PVL ++ G+ + ES +  EY+DEA+    LLP+DPYE+A  +   +   +  VP ++  F  +  E + +    + R+    LE  L  K   +FGG  +  +D  + W   W   +E +     ID    P L  W+   ++ P + A
Sbjct:   33 PFAQRTLLVLNAKGIRHQVININLKNKPEWFFQKNPS-GLVPVLENSQGQLIYESAITCEYLDEAYPGKKLLPDDPYEKACQKMVFELSSK--VPPLLIRFIRRENEADCSGLKEELRKEFSKLEEVLTKKKTTYFGGSSLSMIDYLI-W--PWFERLEALELNECID--HTPKLKLWMAAMMKDPAVSA 214          
BLAST of FC876613 vs. ExPASy Swiss-Prot
Match: MAAI_CAEEL (Probable maleylacetoacetate isomerase OS=Caenorhabditis elegans GN=gst-42 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.292e-11
Identity = 41/98 (41.84%), Postives = 57/98 (58.16%), Query Frame = 1
Query:   52 MAEESVKLLGYWASPFALRVKWALKLKGVHYEYVEENLPNKSPL--LLRYNPVYKKIPVLVHNGKPLAESLLIIEYIDEAWKQNPLLPEDPYERANAR 339
            M+ +   L  YW S  + RV+ AL LK V YEY   +L ++     L   NP   K+P  V +G+ + ESL IIEY++E     PLLP+DP +RA+AR
Sbjct:    1 MSNQKPVLYSYWRSSCSWRVRIALALKNVDYEYKTVDLLSEEAKSKLKEINPA-AKVPTFVVDGQVITESLAIIEYLEETHPDVPLLPKDPIKRAHAR 97          
BLAST of FC876613 vs. ExPASy Swiss-Prot
Match: GSTO1_CAEEL (Glutathione transferase omega-1 OS=Caenorhabditis elegans GN=gsto-1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.292e-11
Identity = 58/209 (27.75%), Postives = 89/209 (42.58%), Query Frame = 1
Query:   94 PFALRVKWALKLKGVHYEYVEENLPNKSPLLLRYNPVYK-KIPVLVHNGKPLAESLLIIEYIDEAWKQNPLLPEDPYERANARFWAKFFD--EKCVPEVMGAFASKGEEQEKAAKARENLKMLERALEGKPFFGGDKIGFLDI-------AVGWIGIWGRIVEEIAGVSLIDAETMPLLTAWLNNFLEVPVIKACIPSWHELLEHNKGF 690
            P+A R    +  KG+  E V  N+ +K  L   +   Y+ K P + HNGK + ES  I EY+D+A+ +  +LP DPYE+   +  A         VP +      +  + EK  K  E LK  E  L    F+ G + G+ D         + W      +V ++  +     E  P LT W    +   V+++   S    LEH   F
Sbjct:   34 PWAERAMLYVAAKGIEAEVVNLNVTDK--LEWYWTKHYQGKAPAVEHNGKVVIESGFIPEYLDDAFPETRILPTDPYEKVQQKLLADRLTAVAHAVPLLFAVMRDRTLKDEKQRKVFEVLKQAENLL-ANDFYAGSQPGYPDYLSFPFFEKIWWSASLDGVV-DLPTIEFPGEEEYPKLTKWFQKMISSDVVQSVTQS----LEHGAAF 234          
The following BLAST results are available for this feature:
BLAST of FC876613 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
GSTO1_PIG2.521e-1128.95Glutathione S-transferase omega-1 OS=Sus scrofa GN... [more]
MAAI_CAEEL3.292e-1141.84Probable maleylacetoacetate isomerase OS=Caenorhab... [more]
GSTO1_CAEEL3.292e-1127.75Glutathione transferase omega-1 OS=Caenorhabditis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2DD05RM1 EHR Citrus clementina cDNA clone KN0AAN2DD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876613 ID=FC876613; Name=FC876613; organism=Citrus clementina; type=EST; length=888bp
GCACGAGGCATTTAGATATTATCACGCGCTGCTTTTGCTTGGCGAGCAAT
AATGGCTGAAGAAAGTGTGAAGTTGCTGGGTTACTGGGCAAGCCCCTTTG
CTCTTAGAGTTAAGTGGGCGCTCAAACTGAAGGGAGTTCACTACGAATAT
GTTGAAGAGAATCTCCCCAACAAGAGTCCCTTGCTGTTGCGATACAATCC
GGTTTATAAGAAGATTCCAGTTCTTGTACACAATGGGAAACCATTGGCAG
AATCACTACTGATCATCGAATACATTGATGAAGCGTGGAAACAAAATCCT
CTCCTCCCAGAAGATCCTTACGAACGGGCCAATGCACGTTTCTGGGCAAA
ATTCTTTGATGAGAAGTGTGTACCTGAAGTCATGGGAGCATTTGCCTCAA
AAGGGGAGGAACAAGAGAAAGCTGCAAAAGCTCGAGAGAATCTGAAGATG
CTGGAAAGGGCTCTGGAGGGGAAGCCCTTTTTTGGTGGTGACAAGATAGG
CTTTCTGGACATTGCTGTGGGGTGGATTGGAATCTGGGGTCGAATTGTTG
AGGAAATTGCAGGTGTCAGCCTGATTGATGCAGAGACGATGCCTTTGCTT
ACTGCTTGGTTGAACAATTTTCTTGAAGTTCCTGTTATCAAAGCATGCAT
ACCATCTTGGCACGAATTGCTTGAGCACAATAAAGGCTTCCGCAAGATCT
TGACAGGTTCATCAACTTGAAGTCTCTACCATCATCAGCGGTTGCCCATG
CATGAAGGTTTCTTAATATGATTTATAAATACTGCTTTTAGACTAAATAT
TATCATAAATAAGGCATGATCCTTCATAGGTTTGTATGAATGTCTTCTAG
ACTATATATATATCATATATGGTACATTATTGGTAACT
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