FC876621

Overview
NameFC876621
Unique NameFC876621
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length611
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876621 vs. ExPASy Swiss-Prot
Match: TRM61_CANGA (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Candida glabrata GN=TRM61 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.988e-19
Identity = 50/144 (34.72%), Postives = 76/144 (52.78%), Query Frame = 2
Query:  149 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMV-----FGNKGGFVYLLAPTPELWTLVLSHTSQILYIAYITFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVSPTRHVYTYDFHDQRAASAKEDFE 565
            I+EGDL +++   D +K V +  N  F  R+G+F H D IGKP+GS +        K  FV+++ P+PELWTL L H +QI+Y    ++++  L   P   V              AR+V     +Y+Y+FH  R   A E+F+
Sbjct:   12 IQEGDLALIWISRDNIKPVTINANETFNTRYGSFPHKDMIGKPYGSQIAIRTKVAKKFAFVHVMQPSPELWTLSLPHRTQIVYTPDSSYIMQRLNCSPNSRVIEAGTGSGSFSHAFARSVG---QLYSYEFHPVRYEQATEEFK 152          
BLAST of FC876621 vs. ExPASy Swiss-Prot
Match: TRM61_YARLI (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Yarrowia lipolytica GN=TRM61 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.476e-18
Identity = 51/150 (34.00%), Postives = 83/150 (55.33%), Query Frame = 2
Query:  149 IKEGDLVIVYERHDCMKAVKVCQNSA-FQNRFGAFKHS--DWIGKPFGSMVFGNKGGFVYLLAPTPELWTLVLSHTSQILYIAYITFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVSPTRHVYTYDFHDQRAASAKEDFERTRMSTFV 589
            I++GDLV+ +     +K + V +    F  R+GAF H   D  G   GSM   +K GF++L+ PTPELWTL L H +QI+Y    ++++  L++ PG  V              +R+      VY+Y+FH++R   AK++FER +++  +
Sbjct:    9 IEDGDLVLGWMTRTAIKPIVVEKKEGLFNTRYGAFPHRNMDKYGAQLGSM---SKQGFIHLIHPTPELWTLSLPHRTQIVYTTDSSYIVQRLKIRPGSTVIESGTGSGSFTHAISRSAGLAGKVYSYEFHEERYNLAKQEFERHQLTNVI 155          
BLAST of FC876621 vs. ExPASy Swiss-Prot
Match: TRM61_SCHPO (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit trm61 OS=Schizosaccharomyces pombe GN=cpd1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.515e-18
Identity = 46/144 (31.94%), Postives = 73/144 (50.69%), Query Frame = 2
Query:  149 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMVFGN-KGGFVYLLAPTPELWTLVLSHTSQILYIAYITFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVSPTRHVYTYDFHDQRAASAKEDFERTRM 577
            ++ GDL + +   + +  + +     F N++GAF HS+ IGK +G  +    K GF+YLL PTPELWTL L H +QI+Y   I  +   L +  G  V              +R V P   ++T+++H  R  +A ++F    M
Sbjct:   10 VENGDLAVAWIGRNKLIPLHIEAEKTFHNQYGAFPHSEMIGKRYGEQIASTAKQGFIYLLQPTPELWTLALPHRTQIVYTPDIALIHQKLRITYGTRVIEAGTGSASMSHAISRTVGPLGRLFTFEYHATRYQTALQEFREHEM 153          
BLAST of FC876621 vs. ExPASy Swiss-Prot
Match: TRM61_ASHGO (tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRM61 OS=Ashbya gossypii GN=TRM61 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.575e-17
Identity = 47/144 (32.64%), Postives = 75/144 (52.08%), Query Frame = 2
Query:  149 IKEGDLVIVYERHDCMKAVKVCQNSAFQNRFGAFKHSDWIGKPFGSMV-----FGNKGGFVYLLAPTPELWTLVLSHTSQILYIAYITFVIMYLELVPGCLVXXXXXXXXXXXXXXARAVSPTRHVYTYDFHDQRAASAKEDFE 565
            I EGDLV+V+     +K +++     F  R+G+F H D +G+P+GS +       N+ GF+++L PTPELWTL L H +QI+Y    ++++  L   P   V              AR V     +++Y+FH  R   A  +F+
Sbjct:   11 IAEGDLVLVWISRGNVKQLRIKSGEVFNTRYGSFAHDDIVGRPYGSQIGVRTKGSNRFGFIHVLQPTPELWTLSLPHRTQIVYTPDSSYIMQRLGCSPQSRVIEAGTGSGSFSHAFARTVG---QLFSYEFHHMRYEQALAEFQ 151          
The following BLAST results are available for this feature:
BLAST of FC876621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
TRM61_CANGA4.988e-1934.72tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_YARLI2.476e-1834.00tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_SCHPO5.515e-1831.94tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]
TRM61_ASHGO3.575e-1732.64tRNA (adenine-N(1)-)-methyltransferase catalytic s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN1AG08RM1 EHR Citrus clementina cDNA clone KN0AAN1AG08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876621 ID=FC876621; Name=FC876621; organism=Citrus clementina; type=EST; length=611bp
TTCTCTCTGCCTCTCAGATTTTGCTGTCTGACTTCCTGAACCCGTCACAA
TTTTATTTGCAGATAATTGCTTGGTTTTAGTAACTCTTTGATAATTTAAA
GGATGTTGCCAAGTGATCCAACGAAAAGAGAGATCCTTTACTCGATGCAT
TAAAGAAGGGGACTTGGTTATTGTCTATGAGAGGCATGACTGCATGAAAG
CTGTTAAAGTATGCCAGAACTCAGCTTTCCAGAACCGTTTTGGTGCGTTT
AAACATTCAGACTGGATTGGGAAGCCCTTTGGGTCTATGGTGTTCGGTAA
CAAGGGCGGATTTGTTTACTTGTTAGCCCCAACTCCGGAGTTATGGACTC
TGGTTTTGAGCCATACAAGTCAGATACTTTACATTGCATATATTACCTTT
GTCATCATGTACTTAGAACTTGTTCCTGGTTGTTTGGTTCTGGAGTCAGG
AACTGGAAGTGGATCTTTGACAACGTCTCTTGCGAGGGCTGTATCTCCTA
CAAGACATGTCTATACTTATGATTTTCATGATCAAAGGGCTGCCTCAGCT
AAGGAAGACTTTGAGAGGACAAGAATGAGCACTTTTGTTACTGTGGGTGT
TATAGATATCC
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