FC876627

Overview
NameFC876627
Unique NameFC876627
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876627 vs. ExPASy Swiss-Prot
Match: THIO_STAAR (Thioredoxin OS=Staphylococcus aureus (strain MRSA252) GN=trxA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.001e-20
Identity = 48/101 (47.52%), Postives = 69/101 (68.32%), Query Frame = 2
Query:  314 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 616
            VTDA + S V +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A +Y + SIPT+++FK+G+  D V+G  PK  L   ++K L
Sbjct:    6 VTDADFDSKV-ESGVQ-LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of FC876627 vs. ExPASy Swiss-Prot
Match: THIO_STAAN (Thioredoxin OS=Staphylococcus aureus (strain N315) GN=trxA PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.001e-20
Identity = 48/101 (47.52%), Postives = 69/101 (68.32%), Query Frame = 2
Query:  314 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 616
            VTDA + S V +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A +Y + SIPT+++FK+G+  D V+G  PK  L   ++K L
Sbjct:    6 VTDADFDSKV-ESGVQ-LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of FC876627 vs. ExPASy Swiss-Prot
Match: THIO_STAAM (Thioredoxin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=trxA PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.001e-20
Identity = 48/101 (47.52%), Postives = 69/101 (68.32%), Query Frame = 2
Query:  314 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 616
            VTDA + S V +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A +Y + SIPT+++FK+G+  D V+G  PK  L   ++K L
Sbjct:    6 VTDADFDSKV-ESGVQ-LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of FC876627 vs. ExPASy Swiss-Prot
Match: THIO_STAAC (Thioredoxin OS=Staphylococcus aureus (strain COL) GN=trxA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.001e-20
Identity = 48/101 (47.52%), Postives = 69/101 (68.32%), Query Frame = 2
Query:  314 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 616
            VTDA + S V +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A +Y + SIPT+++FK+G+  D V+G  PK  L   ++K L
Sbjct:    6 VTDADFDSKV-ESGVQ-LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of FC876627 vs. ExPASy Swiss-Prot
Match: THIO_STAAB (Thioredoxin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=trxA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.001e-20
Identity = 48/101 (47.52%), Postives = 69/101 (68.32%), Query Frame = 2
Query:  314 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 616
            VTDA + S V +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A +Y + SIPT+++FK+G+  D V+G  PK  L   ++K L
Sbjct:    6 VTDADFDSKV-ESGVQ-LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of FC876627 vs. ExPASy Swiss-Prot
Match: THIO_STAA8 (Thioredoxin OS=Staphylococcus aureus (strain NCTC 8325) GN=trxA PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.001e-20
Identity = 48/101 (47.52%), Postives = 69/101 (68.32%), Query Frame = 2
Query:  314 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 616
            VTDA + S V +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A +Y + SIPT+++FK+G+  D V+G  PK  L   ++K L
Sbjct:    6 VTDADFDSKV-ESGVQ-LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of FC876627 vs. ExPASy Swiss-Prot
Match: THIO_STAA3 (Thioredoxin OS=Staphylococcus aureus (strain USA300) GN=trxA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.001e-20
Identity = 48/101 (47.52%), Postives = 69/101 (68.32%), Query Frame = 2
Query:  314 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 616
            VTDA + S V +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A +Y + SIPT+++FK+G+  D V+G  PK  L   ++K L
Sbjct:    6 VTDADFDSKV-ESGVQ-LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of FC876627 vs. ExPASy Swiss-Prot
Match: THIO2_CORNE (Thioredoxin C-2 OS=Corynebacterium nephridii PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 1.001e-20
Identity = 44/98 (44.90%), Postives = 66/98 (67.35%), Query Frame = 2
Query:  317 TDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEK 610
            TD  +Q+ VLD+ +PVLV+FWA WC PC+ I P+++ELS +Y GK+K  KV+       A +Y IR+IP +++FK+GE     +GA P+S L   I++
Sbjct:    9 TDENFQADVLDAETPVLVDFWAGWCAPCKAIAPVLEELSNEYAGKVKIVKVDVTSCEDTAVKYNIRNIPALLMFKDGEVVAQQVGAAPRSKLAAFIDQ 106          
BLAST of FC876627 vs. ExPASy Swiss-Prot
Match: THIO_STAES (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 12228) GN=trxA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.230e-20
Identity = 47/101 (46.53%), Postives = 69/101 (68.32%), Query Frame = 2
Query:  314 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 616
            VTD+ + S + +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A +Y + SIPT+++FK+GE  D V+G  PK  L   ++K L
Sbjct:    6 VTDSDFDSKI-ESGVK-LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKHL 104          
BLAST of FC876627 vs. ExPASy Swiss-Prot
Match: THIO_STAEQ (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=trxA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.230e-20
Identity = 47/101 (46.53%), Postives = 69/101 (68.32%), Query Frame = 2
Query:  314 VTDATWQSLVLDSGSPVLVEFWAPWCGPCRMIHPIIDELSKQYVGKLKCYKVNTDESPSIATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFL 616
            VTD+ + S + +SG   LV+FWA WCGPC+MI P+++EL+  Y GK    K++ DE+PS A +Y + SIPT+++FK+GE  D V+G  PK  L   ++K L
Sbjct:    6 VTDSDFDSKI-ESGVK-LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKHL 104          
The following BLAST results are available for this feature:
BLAST of FC876627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
THIO_STAAR1.001e-2047.52Thioredoxin OS=Staphylococcus aureus (strain MRSA2... [more]
THIO_STAAN1.001e-2047.52Thioredoxin OS=Staphylococcus aureus (strain N315)... [more]
THIO_STAAM1.001e-2047.52Thioredoxin OS=Staphylococcus aureus (strain Mu50 ... [more]
THIO_STAAC1.001e-2047.52Thioredoxin OS=Staphylococcus aureus (strain COL) ... [more]
THIO_STAAB1.001e-2047.52Thioredoxin OS=Staphylococcus aureus (strain bovin... [more]
THIO_STAA81.001e-2047.52Thioredoxin OS=Staphylococcus aureus (strain NCTC ... [more]
THIO_STAA31.001e-2047.52Thioredoxin OS=Staphylococcus aureus (strain USA30... [more]
THIO2_CORNE1.001e-2044.90Thioredoxin C-2 OS=Corynebacterium nephridii PE=1 ... [more]
THIO_STAES2.230e-2046.53Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_STAEQ2.230e-2046.53Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN2DE06RM1 EHR Citrus clementina cDNA clone KN0AAN2DE06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876627 ID=FC876627; Name=FC876627; organism=Citrus clementina; type=EST; length=745bp
GCACGAGGCTCTTTAGATCTCCACTTTTTGTTCCGACGTCCGACCTGCCT
CTGTTCCGATGGCCACCGTGCTCGAGTGCGTCGCCGTTCCTCGCGCTTCG
GCTTCTTCGGTTTTCTCCTCCCCGGCTAAACTTTCGTCTTCTTCCATTAA
TTCGATCTCTGGCCGTCGGAAATTCGCCGAGTTCAAGGGCCTTAAGGTCA
GACCTGTTCGCTCGTTCGGATCGGTGAGTCAGGGTTCGAGTTCGAGCTTC
AGACTCCGTCGCGGTGCGCAAATCGTGTGCGAGGCTCAAGAAACTGCCGT
TGAAGTGCCTGCTGTGACAGATGCAACATGGCAATCACTTGTTCTTGACT
CTGGATCACCTGTGCTTGTTGAATTCTGGGCTCCATGGTGCGGGCCTTGC
CGGATGATCCACCCTATTATTGATGAGCTATCAAAGCAATATGTGGGGAA
GCTAAAATGCTATAAGGTTAATACTGATGAGAGTCCTTCAATTGCTACTA
GATATGGAATTAGGAGCATCCCAACTGTCATGATATTTAAGAATGGCGAG
AAGAAAGATACAGTGATTGGTGCTGTTCCTAAATCCACTTTGACCACCAG
CATAGAGAAATTCTTGTAGACATGGTAAGTAAAGGACGCGTTTGCTAGAA
ACAGGCTCTCTGTAGCATTTGTTTGTTTGCCTTGTAGCTTACTATGCCTT
GGGTTAAGATACTTTGCTTTCCACAATAAATTATCTTCTGCCCTT
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